vOTU vOTU-079521

vOTU: vOTU-079521

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-079521
Number of genomes	4
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-103
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00581 → vGENUS-00476 → vSUBGEN-06122 → vOTU-079521
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-103
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0261126
Biosample ID	SAMEA2466955
Genome length (bp)	40,989 bps
CheckV completeness	98.91% (High-quality)
CDS count	51
CDS density	94.06%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-103	Total connections	415	Host agreement	93.73
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-103	Total connections	9	Host agreement	77.78

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 98.91)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0261126_2	1131462.DCF50_p2449	55.8	0.000000217	Bacterial Ig-like domain 2	N/A
NCBIFam	UHGV-0261126_2	NF033223.2	N/A	N/A	YHYH domain-containing protein	N/A
COG	UHGV-0261126_2	COG5492	N/A	N/A	N/A	N/A
UniRef90	UHGV-0261126_3	UniRef90_UPI001D0E690A	98.2	1.35e-25	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0261126_3	1321782.HMPREF1986_00318	56.6	0.000000000649	N/A	N/A
structural_annotation	UHGV-0261126_3	PF21291,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0261126_4	K22300	62.0	1.4e-17	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0261126_4	phrog_8	55.1	0.0000000000000021	transcriptional regulator	transcription regulation
UniRef90	UHGV-0261126_4	UniRef90_K1TCM8	107.0	8.4e-28	Protein containing Helix-turn-helix type 3 domain protein	N/A
eggNOG-mapper	UHGV-0261126_4	1238182.C882_2735	58.9	0.00000000249	transcriptional regulator	N/A
Pfam	UHGV-0261126_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0261126_4	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0261126_4	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0261126_5	K07729	67.5	2.6e-19	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0261126_5	phrog_8	45.8	0.0000000000014	transcriptional regulator	transcription regulation
UniRef90	UHGV-0261126_5	UniRef90_R5AVU4	81.6	3.5e-19	CI-like repressor	N/A
eggNOG-mapper	UHGV-0261126_5	608538.HTH_1322	62.4	0.000000000121	PBP superfamily domain	N/A
Pfam	UHGV-0261126_5	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0261126_5	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0261126_5	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0261126_7	K14059	139.0	6.20005e-41	int; integrase	N/A
PHROG	UHGV-0261126_7	phrog_1	157.7	0	integrase	integration and excision
UniRef90	UHGV-0261126_7	UniRef90_UPI000F051A1D	421.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0261126_7	693746.OBV_43340	402.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0261126_7	PF14657	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_4
Pfam	UHGV-0261126_7	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0261126_7	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0261126_7	PF00589,PF13495,MF_02055,TIGR02225,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0261126_8	phrog_1129	63.1	3.4e-18	holin	lysis
UniRef90	UHGV-0261126_8	UniRef90_A0A8J6J3M3	102.0	1.01e-26	Phage holin family protein	N/A
eggNOG-mapper	UHGV-0261126_8	665956.HMPREF1032_03272	96.3	5.16e-25	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0261126_8	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0261126_8	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0261126_9	phrog_1863	63.4	8e-19	N/A	unknown function
UniRef90	UHGV-0261126_9	UniRef90_UPI001F223E8B	70.5	0.0000000000000405	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-0261126_9	1226322.HMPREF1545_04027	68.2	0.0000000000000539	N/A	N/A
KOfam	UHGV-0261126_10	K01447	71.3	1.8e-20	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0261126_10	phrog_1794	141.1	1.10002e-41	amidase	lysis
UniRef90	UHGV-0261126_10	UniRef90_R5AZE6	302.0	0	N-acetylmuramoyl-L-alanine amidase family 2	N/A
eggNOG-mapper	UHGV-0261126_10	1235793.C809_04312	209.0	0	Ami_2	N/A
Pfam	UHGV-0261126_10	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0261126_10	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0261126_10	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
Pfam	UHGV-0261126_11	PF09479	N/A	N/A	Listeria-Bacteroides repeat domain (List_Bact_rpt)	Flg_new
structural_annotation	UHGV-0261126_11	PF18998,PF20328	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0261126_13	742733.HMPREF9469_05009	57.8	0.00000000303	N/A	N/A
PHROG	UHGV-0261126_14	phrog_13589	204.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0261126_14	411460.RUMTOR_01324	233.0	0	N/A	N/A
PHROG	UHGV-0261126_15	phrog_31538	56.8	4.7e-16	N/A	unknown function
PHROG	UHGV-0261126_16	phrog_15594	78.0	9.2e-23	N/A	unknown function
eggNOG-mapper	UHGV-0261126_16	1118055.CAGU01000013_gene763	48.1	0.00000505	N/A	N/A
structural_annotation	UHGV-0261126_16	PF16640,TIGR04488	N/A	N/A	N/A	N/A
PHROG	UHGV-0261126_17	phrog_22978	734.5	0	N/A	unknown function
UniRef90	UHGV-0261126_17	UniRef90_A0A1Y4WLF7	606.0	0	PBECR5 domain-containing protein	N/A
eggNOG-mapper	UHGV-0261126_17	1410650.JHWL01000003_gene2814	357.0	0	N/A	N/A
eggNOG-mapper	UHGV-0261126_18	1410650.JHWL01000003_gene2815	97.8	3.5e-19	N/A	N/A
PHROG	UHGV-0261126_20	phrog_24267	108.6	5.5e-32	N/A	unknown function
eggNOG-mapper	UHGV-0261126_20	508419.F8J176_9CAUD	130.0	5.5e-32	peptidoglycan catabolic process	N/A
structural_annotation	UHGV-0261126_20	COG4675	N/A	N/A	N/A	N/A
PHROG	UHGV-0261126_21	phrog_38190	62.6	8.5e-18	N/A	unknown function
eggNOG-mapper	UHGV-0261126_21	762211.BSTEL_0610	70.9	0.00000000000317	N/A	N/A
PHROG	UHGV-0261126_23	phrog_511	174.1	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0261126_23	1410650.JHWL01000003_gene2827	259.0	0	N/A	N/A
structural_annotation	UHGV-0261126_23	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0261126_24	phrog_12105	130.4	7.9e-39	N/A	unknown function
eggNOG-mapper	UHGV-0261126_24	1226322.HMPREF1545_03850	88.2	8.54e-21	N/A	N/A
PHROG	UHGV-0261126_25	phrog_15239	46.1	0.00000000000077	N/A	unknown function
PHROG	UHGV-0261126_26	phrog_1357	215.3	0	major head protein	head and packaging
UniRef90	UHGV-0261126_26	UniRef90_A0A2V2CFL5	612.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0261126_26	1410650.JHWL01000003_gene2830	279.0	0	N/A	N/A
NCBIFam	UHGV-0261126_26	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0261126_26	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0261126_27	phrog_13908	192.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0261126_27	1410650.JHWL01000003_gene2831	119.0	2.75e-28	N/A	N/A
KOfam	UHGV-0261126_28	K07584	44.8	0.0000000000023	N/A	N/A
PHROG	UHGV-0261126_28	phrog_4478	53.3	0.0000000000000027	peptidase	other
UniRef90	UHGV-0261126_28	UniRef90_UPI001A8F44BB	53.9	0.000000413	ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-0261126_28	521098.Aaci_1816	55.1	0.0000000247	Cysteine protease Prp	N/A
Pfam	UHGV-0261126_28	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0261126_28	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0261126_28	PF04327,NF011133,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0261126_29	phrog_156	291.6	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0261126_29	1410650.JHWL01000003_gene2833	522.0	0	N/A	N/A
structural_annotation	UHGV-0261126_29	PF16510,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
KOfam	UHGV-0261126_30	K06909	122.5	4.1e-36	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0261126_30	phrog_979	121.7	1.8e-37	terminase large subunit	head and packaging
UniRef90	UHGV-0261126_30	UniRef90_A0A810Q5R0	622.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0261126_30	1410650.JHWL01000003_gene2834	566.0	0	N/A	N/A
Pfam	UHGV-0261126_30	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0261126_30	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0261126_30	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0261126_31	phrog_1206	41.4	0.0000000000045	terminase small subunit	head and packaging
UniRef90	UHGV-0261126_33	UniRef90_A0A1Q9JGI6	124.0	1.13e-33	RHH_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0261126_33	1095750.HMPREF9970_2261	119.0	2.64e-32	N/A	N/A
structural_annotation	UHGV-0261126_33	PF03869,NF041793,COG4691	N/A	N/A	N/A	N/A
KOfam	UHGV-0261126_35	K01160	47.5	0.00000000000051	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0261126_35	phrog_1682	76.1	5.7e-22	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0261126_35	UniRef90_A0A174WGH7	120.0	1.49e-32	Holliday junction resolvase	N/A
eggNOG-mapper	UHGV-0261126_35	1235790.C805_00029	118.0	5.54e-33	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
COG	UHGV-0261126_35	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0261126_35	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0261126_36	phrog_474	115.2	9.2e-34	phosphofructokinase	other
UniRef90	UHGV-0261126_36	UniRef90_G9RWI8	117.0	2e-31	N/A	N/A
eggNOG-mapper	UHGV-0261126_36	665956.HMPREF1032_00639	117.0	3.35e-32	N/A	N/A
Pfam	UHGV-0261126_36	PF19905	N/A	N/A	N/A	DUF6378
structural_annotation	UHGV-0261126_36	PF19905	N/A	N/A	N/A	N/A
PHROG	UHGV-0261126_40	phrog_424	115.5	5.1e-34	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0261126_40	UniRef90_R6PFX4	452.0	0	Putative phage reductase	N/A
eggNOG-mapper	UHGV-0261126_40	272563.CD630_09300	107.0	5.11e-25	N/A	N/A
PADLOC	UHGV-0261126_40	SspD_00001	62.3	1.8e-17	SspD	SSP
COG	UHGV-0261126_40	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0261126_40	PF01507,MF_00063,NF006327,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-0261126_43	phrog_9474	123.2	2.5e-36	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0261126_43	UniRef90_A0A1I7FTR4	117.0	2.35e-27	DnaD and phage-associated domain-containing protein	N/A
eggNOG-mapper	UHGV-0261126_43	644966.Tmar_0029	110.0	3.73e-25	HNH endonuclease	N/A
COG	UHGV-0261126_43	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
KOfam	UHGV-0261126_44	K03111	141.6	8.80015e-42	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0261126_44	phrog_44	137.0	1.3e-40	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0261126_44	UniRef90_R5D149	182.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0261126_44	1226322.HMPREF1545_04080	179.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0261126_44	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0261126_44	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0261126_44	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0261126_44	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0261126_44	PF00436,MF_00984,NF005242,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0261126_45	K07455	173.6	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0261126_45	phrog_148	166.6	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0261126_45	UniRef90_A0A7X7Z0P1	320.0	0	Recombinase RecT	N/A
eggNOG-mapper	UHGV-0261126_45	1591073.A0A0B5D0I3_9CAUD	188.0	0	DNA metabolic process	N/A
Pfam	UHGV-0261126_45	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0261126_45	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
structural_annotation	UHGV-0261126_45	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0261126_46	PF12844,MF_00535,NF041951,COG5499	N/A	N/A	N/A	N/A
PHROG	UHGV-0261126_47	phrog_434	313.8	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0261126_47	UniRef90_A0A1Y4L975	294.0	0	YqaJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0261126_47	1121344.JHZO01000003_gene985	278.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-0261126_47	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-0261126_47	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-0261126_47	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0261126_47	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
Pfam	UHGV-0261126_49	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
eggNOG-mapper	UHGV-0261126_51	1235835.C814_03153	66.2	0.000000000000172	N/A	N/A
structural_annotation	UHGV-0261126_51	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0261126	Yes	40,989	59	99	1
UHGV-0167266	No	21,770	61	52	1
UHGV-1710321	No	13,997	61	34	1
UHGV-1822414	No	12,080	59	29	1