vOTU vOTU-079556

vOTU: vOTU-079556

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-079556
Number of genomes	5
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00316 → vGENUS-01765 → vSUBGEN-23665 → vOTU-079556
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger qucibialis
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-2112701
Biosample ID	N/A
Genome length (bp)	37,334 bps
CheckV completeness	97.87% (High-quality)
CDS count	51
CDS density	91.04%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger qucibialis	Total connections	45	Host agreement	86.67
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger qucibialis	Total connections	482	Host agreement	98.76

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 97.87)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-2112701_1	K14059	193.7	0	int; integrase	N/A
PHROG	UHGV-2112701_1	phrog_1	198.2	0	integrase	integration and excision
UniRef90	UHGV-2112701_1	UniRef90_UPI00195B6EEA	456.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-2112701_1	1235797.C816_00779	177.0	0	Phage integrase family	N/A
Pfam	UHGV-2112701_1	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-2112701_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-2112701_1	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-2112701_1	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-2112701_2	phrog_2695	433.7	0	N/A	unknown function
UniRef90	UHGV-2112701_2	UniRef90_UPI0012DFA61A	818.0	0	SIR2 family protein	N/A
eggNOG-mapper	UHGV-2112701_2	1121115.AXVN01000014_gene1232	525.0	0	SIR2-like domain	N/A
PADLOC	UHGV-2112701_2	Sirtuin_Blast2	342.2	0	N/A	N/A
Pfam	UHGV-2112701_2	PF13289	N/A	N/A	SIR2-like domain	SIR2_2
COG	UHGV-2112701_2	COG0846	N/A	N/A	NAD-dependent protein deacetylase, SIR2 family	N/A
structural_annotation	UHGV-2112701_2	PF13289	N/A	N/A	N/A	N/A
KOfam	UHGV-2112701_3	K19370	42.0	0.0000000000082	DNAJC22; DnaJ homolog subfamily C member 22	N/A
PHROG	UHGV-2112701_3	phrog_10292	60.4	1.7e-18	N/A	unknown function
UniRef90	UHGV-2112701_3	UniRef90_UPI001916763D	121.0	1.4e-32	TM2 domain-containing protein	N/A
eggNOG-mapper	UHGV-2112701_3	665956.HMPREF1032_00562	105.0	3.04e-27	TM2 domain	N/A
Pfam	UHGV-2112701_3	PF13248	N/A	N/A	zinc-ribbon domain	zf-ribbon_3
Pfam	UHGV-2112701_3	PF05154	N/A	N/A	TM2 domain	TM2
COG	UHGV-2112701_3	COG2314	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2112701_3	PF05154,PF12773,MF_00788,NF003161	N/A	N/A	N/A	N/A
PHROG	UHGV-2112701_4	phrog_87	46.1	0.00000000000057	metallo-protease	other
UniRef90	UHGV-2112701_4	UniRef90_UPI001C3AA0FC	131.0	1.73e-36	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-2112701_4	663278.Ethha_2376	93.2	2.2e-22	N/A	N/A
structural_annotation	UHGV-2112701_4	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-2112701_5	K22300	54.4	0.0000000000000028	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-2112701_5	phrog_2967	64.4	1.6e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-2112701_5	UniRef90_A0A412UNH6	81.3	1.88e-17	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-2112701_5	911104.AEKT01000001_gene15	68.9	0.000000000000204	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-2112701_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2112701_5	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-2112701_5	PF01381,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-2112701_6	K22300	40.6	0.000000000045	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-2112701_6	phrog_2439	43.1	0.0000000000049	transcriptional regulator	transcription regulation
UniRef90	UHGV-2112701_6	UniRef90_A0A6N2UL50	97.4	5.12e-25	Helix-turn-helix	N/A
eggNOG-mapper	UHGV-2112701_6	1504823.CCMM01000008_gene1079	63.5	0.00000000000149	sequence-specific DNA binding	N/A
Pfam	UHGV-2112701_6	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2112701_6	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-2112701_6	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-2112701_7	phrog_9576	74.4	1.5e-21	N/A	unknown function
UniRef90	UHGV-2112701_7	UniRef90_J9GVA4	70.9	0.0000000000000672	N/A	N/A
eggNOG-mapper	UHGV-2112701_7	1074451.CRL705_1700	72.4	0.0000000000000028	N/A	N/A
structural_annotation	UHGV-2112701_9	PF00227,MF_02113_A,TIGR03634,COG0638	N/A	N/A	N/A	N/A
PHROG	UHGV-2112701_10	phrog_4583	44.1	0.0000000000029	transcriptional repressor	transcription regulation
UniRef90	UHGV-2112701_10	UniRef90_UPI000A0213FB	87.0	5.89e-21	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-2112701_10	1680.BADO_1596	47.0	0.00000486	BetR domain	N/A
Pfam	UHGV-2112701_10	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-2112701_10	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-2112701_11	UniRef90_A0A367GHD7	155.0	0	HTH_17 domain-containing protein	N/A
Pfam	UHGV-2112701_11	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
structural_annotation	UHGV-2112701_13	PF12957	N/A	N/A	N/A	N/A
PHROG	UHGV-2112701_15	phrog_1733	51.6	8.9e-16	N/A	unknown function
UniRef90	UHGV-2112701_15	UniRef90_UPI001967A828	195.0	0	cell envelope integrity protein TolA	N/A
eggNOG-mapper	UHGV-2112701_15	665956.HMPREF1032_03597	209.0	0	DNA binding	N/A
COG	UHGV-2112701_15	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
PHROG	UHGV-2112701_18	phrog_1366	236.2	0	N/A	unknown function
UniRef90	UHGV-2112701_18	UniRef90_UPI00164C2BFB	320.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-2112701_18	748224.HMPREF9436_01458	310.0	0	AAA domain	N/A
Pfam	UHGV-2112701_18	PF13479	N/A	N/A	AAA domain	AAA_24
COG	UHGV-2112701_18	COG0468	N/A	N/A	RecA/RadA recombinase	N/A
structural_annotation	UHGV-2112701_18	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2112701_19	PF03838,MF_00130,TIGR00648,COG3331	N/A	N/A	N/A	N/A
KOfam	UHGV-2112701_20	K18959	188.6	0	uvsW; ATP-dependent DNA helicase UvsW [EC:5.6.2.4]	N/A
PHROG	UHGV-2112701_20	phrog_16	201.8	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2112701_20	UniRef90_A0A316L8C8	471.0	0	Helicase ATP-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-2112701_20	748224.HMPREF9436_01460	439.0	0	Type III restriction protein res subunit	N/A
PADLOC	UHGV-2112701_20	mREase_IV_00005	47.9	0.00000000000012	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-2112701_20	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-2112701_20	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-2112701_20	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-2112701_20	PF04851,PF16203,MF_01489,TIGR00603,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-2112701_21	phrog_378	44.0	0.0000000000042	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-2112701_21	997346.HMPREF9374_1140	59.7	0.00000000697	N/A	N/A
structural_annotation	UHGV-2112701_21	PF05037	N/A	N/A	N/A	N/A
KOfam	UHGV-2112701_22	K06919	120.5	1.2e-35	K06919; putative DNA primase/helicase	N/A
PHROG	UHGV-2112701_22	phrog_1829	697.9	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2112701_22	UniRef90_A0A2V2F8P9	1153.0	0	DNA primase	N/A
eggNOG-mapper	UHGV-2112701_22	748224.HMPREF9436_01462	827.0	0	Phage plasmid primase, P4 family	N/A
Pfam	UHGV-2112701_22	PF08706	N/A	N/A	D5 N terminal like	D5_N
Pfam	UHGV-2112701_22	PF19263	N/A	N/A	N/A	DUF5906
Pfam	UHGV-2112701_22	PF03288	N/A	N/A	Poxvirus D5 protein-like	Pox_D5
NCBIFam	UHGV-2112701_22	TIGR01613.1	N/A	N/A	phage/plasmid primase, P4 family	N/A
COG	UHGV-2112701_22	COG3378	N/A	N/A	DNA primase, phage- or plasmid-associated	N/A
structural_annotation	UHGV-2112701_22	PF08706,PF05272,PF02257,MF_04000,NF011296,COG3378,COG4983	N/A	N/A	N/A	N/A
PHROG	UHGV-2112701_26	phrog_36	43.2	0.0000000000069	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-2112701_26	693746.OBV_25230	129.0	1.02e-36	N/A	N/A
structural_annotation	UHGV-2112701_26	PF06530,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-2112701_27	phrog_1281	125.5	2.7e-37	N/A	unknown function
UniRef90	UHGV-2112701_27	UniRef90_UPI00130E304C	187.0	0	N/A	N/A
eggNOG-mapper	UHGV-2112701_27	1321815.HMPREF9193_02066	139.0	2.29e-40	N/A	N/A
Pfam	UHGV-2112701_27	PF13274	N/A	N/A	Antitoxin SocA-like, Panacea domain	SocA_Panacea
COG	UHGV-2112701_27	COG3600	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2112701_27	PF13274,COG3600	N/A	N/A	N/A	N/A
PHROG	UHGV-2112701_28	phrog_5763	42.3	0.00000000000061	N/A	unknown function
eggNOG-mapper	UHGV-2112701_28	742740.HMPREF9474_04284	100.0	1.58e-21	N/A	N/A
PHROG	UHGV-2112701_29	phrog_606	89.6	3.2e-26	terminase small subunit	head and packaging
UniRef90	UHGV-2112701_29	UniRef90_UPI00195648BB	183.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-2112701_29	397290.C810_05185	163.0	0	DNA-packaging protein gp3	N/A
Pfam	UHGV-2112701_29	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-2112701_29	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-2112701_30	K06909	132.6	3.9e-39	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-2112701_30	phrog_2	158.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-2112701_30	UniRef90_A0A367GH60	872.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-2112701_30	1120746.CCNL01000014_gene2093	546.0	0	DNA packaging	N/A
Pfam	UHGV-2112701_30	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-2112701_30	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-2112701_30	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-2112701_30	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-2112701_30	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-2112701_31	phrog_533	359.2	0	portal protein	head and packaging
UniRef90	UHGV-2112701_31	UniRef90_A0A367GFE3	919.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-2112701_31	663278.Ethha_0090	568.0	0	N/A	N/A
Pfam	UHGV-2112701_31	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-2112701_31	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-2112701_32	phrog_581	342.7	0	minor head protein	head and packaging
UniRef90	UHGV-2112701_32	UniRef90_A0A1C5NZK4	563.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-2112701_32	748224.HMPREF9436_03339	458.0	0	N/A	N/A
Pfam	UHGV-2112701_32	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-2112701_32	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2112701_32	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-2112701_35	phrog_194	59.4	4.7e-17	head scaffolding protein	head and packaging
UniRef90	UHGV-2112701_35	UniRef90_E6U604	162.0	0	Minor structural GP20 protein	N/A
eggNOG-mapper	UHGV-2112701_35	663278.Ethha_0497	163.0	0	N/A	N/A
Pfam	UHGV-2112701_35	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-2112701_35	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-2112701_36	phrog_10	183.5	0	major head protein	head and packaging
UniRef90	UHGV-2112701_36	UniRef90_A0A367GHJ2	762.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-2112701_36	1120998.AUFC01000030_gene2236	525.0	0	Phage capsid family	N/A
Pfam	UHGV-2112701_36	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-2112701_36	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-2112701_36	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-2112701_36	PF05065,PF13620,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-2112701_37	phrog_541	57.8	1.9e-16	head-tail adaptor	connector
eggNOG-mapper	UHGV-2112701_37	663278.Ethha_0495	74.7	0.00000000000000207	N/A	N/A
eggNOG-mapper	UHGV-2112701_38	411471.SUBVAR_06991	57.8	0.00000000246	N/A	N/A
Pfam	UHGV-2112701_38	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-2112701_38	PF20536	N/A	N/A	N/A	N/A
PHROG	UHGV-2112701_39	phrog_556	96.0	2.4e-28	minor head protein	head and packaging
UniRef90	UHGV-2112701_39	UniRef90_UPI001958E7C1	226.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-2112701_39	665956.HMPREF1032_03062	173.0	0	Minor capsid protein	N/A
Pfam	UHGV-2112701_39	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-2112701_39	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-2112701_40	phrog_3266	75.6	6.1e-22	tail completion	connector
eggNOG-mapper	UHGV-2112701_40	663278.Ethha_0492	60.1	0.00000000141	N/A	N/A
structural_annotation	UHGV-2112701_40	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-2112701_41	phrog_3099	67.5	2.4e-19	N/A	unknown function
eggNOG-mapper	UHGV-2112701_41	665956.HMPREF1032_03060	246.0	0	N/A	N/A
structural_annotation	UHGV-2112701_41	PF10772,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-2112701_42	phrog_11299	86.5	1.4e-25	N/A	unknown function
eggNOG-mapper	UHGV-2112701_42	665956.HMPREF1032_03059	125.0	4.41e-35	N/A	N/A
structural_annotation	UHGV-2112701_42	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-2112701_43	phrog_706	96.7	2.4e-28	N/A	unknown function
UniRef90	UHGV-2112701_43	UniRef90_UPI0013141117	376.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-2112701_43	665956.HMPREF1032_03058	238.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-2112701_43	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-2112701_43	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-2112701_44	phrog_1535	88.9	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-2112701_44	411471.SUBVAR_06934	197.0	0	tape measure	N/A
COG	UHGV-2112701_44	COG5412	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-2112701_45	phrog_1194	58.2	1.4e-16	N/A	unknown function
eggNOG-mapper	UHGV-2112701_45	411471.SUBVAR_06933	201.0	0	N/A	N/A
structural_annotation	UHGV-2112701_45	PF20458,TIGR02126,COG4718	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2112701_48	476272.RUMHYD_00002	132.0	1.1e-28	N/A	N/A
structural_annotation	UHGV-2112701_48	PF10651	N/A	N/A	N/A	N/A
KOfam	UHGV-2112701_50	K19304	119.4	3.9e-35	mepM; murein DD-endopeptidase [EC:3.4.24.-]	N/A
PHROG	UHGV-2112701_50	phrog_10030	93.8	7.2e-28	tail length tape measure protein	tail
UniRef90	UHGV-2112701_50	UniRef90_A0A3D1PRD1	411.0	0	Peptidase_M23 domain-containing protein	N/A
eggNOG-mapper	UHGV-2112701_50	1382304.JNIL01000001_gene2694	102.0	1.22e-22	G5	N/A
Pfam	UHGV-2112701_50	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
COG	UHGV-2112701_50	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
structural_annotation	UHGV-2112701_50	PF01551,NF040883	N/A	N/A	N/A	N/A
PHROG	UHGV-2112701_51	phrog_1863	67.7	1e-19	N/A	unknown function
eggNOG-mapper	UHGV-2112701_51	665956.HMPREF1032_03922	108.0	5.04e-30	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-2112701	Yes	37,334	57	98	1
UHGV-2150613	No	32,098	57	84	1
UHGV-2061812	No	32,096	57	84	1
UHGV-2055682	No	31,944	59	84	1
UHGV-0141174	No	31,241	57	82	1