vOTU vOTU-079565

vOTU: vOTU-079565

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-079565
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00251 → vSUBFAM-01976 → vGENUS-19297 → vSUBGEN-37241 → vOTU-079565
Host lineage
Host range breadth
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0019948
Biosample ID	SAMEA4765612
Genome length (bp)	64,684 bps
CheckV completeness	96.71% (High-quality)
CDS count	71
CDS density	91.66%
tRNA count	3
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method
CRISPR-predicted host lineage	Total connections	Host agreement
PHIST-predicted host lineage	Total connections	Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 96.71)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0019948_16	UniRef90_D4MWL6	75.1	0.0000000000000182	N/A	N/A
eggNOG-mapper	UHGV-0019948_16	1410676.JNKL01000004_gene671	81.3	1.05e-17	Protein conserved in bacteria	N/A
Pfam	UHGV-0019948_16	PF07866	N/A	N/A	N/A	DUF1653
COG	UHGV-0019948_16	COG4728	N/A	N/A	N/A	N/A
KOfam	UHGV-0019948_21	K03698	238.7	0	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	N/A
UniRef90	UHGV-0019948_21	UniRef90_A0A7X7BYC9	188.0	0	HD domain-containing protein	N/A
eggNOG-mapper	UHGV-0019948_21	660470.Theba_0421	142.0	6.86e-37	nucleic acid binding OB-fold tRNA helicase-type	N/A
Pfam	UHGV-0019948_21	PF01966	N/A	N/A	HD domain	HD
NCBIFam	UHGV-0019948_21	TIGR00277.1	N/A	N/A	HDIG domain-containing protein	N/A
COG	UHGV-0019948_21	COG3481	N/A	N/A	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	N/A
structural_annotation	UHGV-0019948_21	PF13742,PF01966,MF_01427,NF010007,COG3481	N/A	N/A	N/A	N/A
PHROG	UHGV-0019948_22	phrog_6038	48.1	0.00000000000019	N/A	unknown function
KOfam	UHGV-0019948_23	K01449	56.1	7.9e-16	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
Pfam	UHGV-0019948_23	PF07486	N/A	N/A	Cell Wall Hydrolase	Hydrolase_2
COG	UHGV-0019948_23	COG3773	N/A	N/A	Cell wall hydrolase CwlJ, involved in spore germination	N/A
KOfam	UHGV-0019948_26	K02335	341.0	0	polA; DNA polymerase I [EC:2.7.7.7]	N/A
PHROG	UHGV-0019948_26	phrog_17	331.9	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0019948_26	UniRef90_A0A7X7H672	443.0	0	DNA polymerase I	N/A
eggNOG-mapper	UHGV-0019948_26	1270193.JARP01000002_gene1097	209.0	0	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity	N/A
PADLOC	UHGV-0019948_26	drt-cluster58	62.5	7.7e-18	DRT	DRT
Pfam	UHGV-0019948_26	PF01612	N/A	N/A	3'-5' exonuclease	DNA_pol_A_exo1
Pfam	UHGV-0019948_26	PF00476	N/A	N/A	DNA polymerase family A	DNA_pol_A
COG	UHGV-0019948_26	COG0258	N/A	N/A	5'-3' exonuclease Xni/ExoIX (flap endonuclease)	N/A
structural_annotation	UHGV-0019948_26	PF00476,PF01612,MF_04101,NF011541,COG0749	N/A	N/A	N/A	N/A
KOfam	UHGV-0019948_28	K01493	83.3	3.4e-24	comEB; dCMP deaminase [EC:3.5.4.12]	N/A
PHROG	UHGV-0019948_28	phrog_174	104.4	6.7e-31	dCMP deaminase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0019948_28	UniRef90_A0A7X7BY83	143.0	1.76003e-41	CMP/dCMP-type deaminase domain-containing protein	N/A
eggNOG-mapper	UHGV-0019948_28	643867.Ftrac_0923	77.0	8.34e-16	PFAM Cytidine and deoxycytidylate deaminase zinc-binding region	N/A
PADLOC	UHGV-0019948_28	dCTPase	44.1	1.5e-16	N/A	N/A
Pfam	UHGV-0019948_28	PF00383	N/A	N/A	Cytidine and deoxycytidylate deaminase zinc-binding region	dCMP_cyt_deam_1
COG	UHGV-0019948_28	COG2131	N/A	N/A	Deoxycytidylate deaminase	N/A
PHROG	UHGV-0019948_30	phrog_761	69.9	2.4e-20	thymidylate kinase	other
UniRef90	UHGV-0019948_30	UniRef90_A0A7X7BY76	116.0	2.79e-30	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0019948_30	1003195.SCAT_2836	67.8	0.00000000000537	N/A	N/A
Pfam	UHGV-0019948_30	PF03976	N/A	N/A	Polyphosphate kinase 2 (PPK2)	PPK2
structural_annotation	UHGV-0019948_30	PF03976,MF_00165,TIGR00041,COG1428	N/A	N/A	N/A	N/A
KOfam	UHGV-0019948_31	K03465	66.6	3.9e-19	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	N/A
UniRef90	UHGV-0019948_31	UniRef90_A0A413BDY8	261.0	0	FAD-dependent thymidylate synthase	N/A
eggNOG-mapper	UHGV-0019948_31	511680.BUTYVIB_00662	260.0	0	thymidylate synthase (FAD) activity	N/A
Pfam	UHGV-0019948_31	PF02511	N/A	N/A	Thymidylate synthase complementing protein	Thy1
COG	UHGV-0019948_31	COG1351	N/A	N/A	Thymidylate synthase ThyX, FAD-dependent family	N/A
structural_annotation	UHGV-0019948_31	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
PHROG	UHGV-0019948_33	phrog_173	41.8	2.3e-18	nucleoside triphosphate pyrophosphohydrolase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0019948_33	UniRef90_A0A2A2RL03	56.2	0.000000163	dUTPase	N/A
eggNOG-mapper	UHGV-0019948_33	278957.ABEA03000094_gene4751	61.6	0.000000000217	dUTPase	N/A
Pfam	UHGV-0019948_33	PF08761	N/A	N/A	dUTPase	dUTPase_2
COG	UHGV-0019948_33	COG4508	N/A	N/A	Dimeric dUTPase, all-alpha-NTP-PPase (MazG) superfamily	N/A
structural_annotation	UHGV-0019948_33	PF12643,MF_01020,NF001610,COG0140	N/A	N/A	N/A	N/A
PHROG	UHGV-0019948_34	phrog_434	200.6	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0019948_34	UniRef90_UPI000C8293E6	130.0	1.95e-31	YqaJ viral recombinase family protein	N/A
eggNOG-mapper	UHGV-0019948_34	1122128.AUEE01000007_gene1645	119.0	4.66e-28	YqaJ-like viral recombinase domain	N/A
Pfam	UHGV-0019948_34	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-0019948_34	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-0019948_34	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0019948_34	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
KOfam	UHGV-0019948_36	K02316	112.5	3.1e-33	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-0019948_36	phrog_18685	372.6	0	N/A	unknown function
UniRef90	UHGV-0019948_36	UniRef90_A0A661MUG1	546.0	0	ZnF_CHCC domain-containing protein	N/A
eggNOG-mapper	UHGV-0019948_36	360911.EAT1b_0006	350.0	0	DNA primase activity	N/A
Pfam	UHGV-0019948_36	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
Pfam	UHGV-0019948_36	PF13155	N/A	N/A	Toprim-like	Toprim_2
Pfam	UHGV-0019948_36	PF00493	N/A	N/A	MCM P-loop domain	MCM
COG	UHGV-0019948_36	COG1241	N/A	N/A	DNA replicative helicase MCM subunit Mcm2, Cdc46/Mcm family	N/A
structural_annotation	UHGV-0019948_36	PF00493,PF01807,PF13155,PF14947,MF_00974,MF_01314,NF040949,TIGR01391,COG1241	N/A	N/A	N/A	N/A
PHROG	UHGV-0019948_37	phrog_2402	54.5	0.0000000000000014	N/A	unknown function
structural_annotation	UHGV-0019948_37	PF18897	N/A	N/A	N/A	N/A
KOfam	UHGV-0019948_38	K03469	89.4	4.7e-26	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-0019948_38	phrog_531	85.2	6.3e-25	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0019948_38	UniRef90_A0A7X7H6F4	120.0	5.15e-30	RNase H type-1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0019948_38	35725.K2RU56	69.7	0.0000000000454	RNA-DNA hybrid ribonuclease activity	N/A
Pfam	UHGV-0019948_38	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-0019948_38	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0019948_38	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
KOfam	UHGV-0019948_40	K18951	164.8	0	gp30; DNA ligase [EC:6.5.1.1]	N/A
PHROG	UHGV-0019948_40	phrog_114	162.1	0	ATP-dependent DNA ligase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0019948_40	UniRef90_UPI000F637511	210.0	0	ATP-dependent DNA ligase	N/A
eggNOG-mapper	UHGV-0019948_40	1308863.U5JA36_9CAUD	157.0	3.66e-40	DNA ligase (ATP) activity	N/A
Pfam	UHGV-0019948_40	PF01068	N/A	N/A	ATP dependent DNA ligase domain	DNA_ligase_A_M
structural_annotation	UHGV-0019948_40	PF01068,PF04675,MF_00407,NF002868,COG1793	N/A	N/A	N/A	N/A
KOfam	UHGV-0019948_41	K03091	43.1	0.0000000000071	sigH; RNA polymerase sporulation-specific sigma factor	N/A
Pfam	UHGV-0019948_41	PF04542	N/A	N/A	Sigma-70 region 2	Sigma70_r2
structural_annotation	UHGV-0019948_41	PF04542,PF08281,MF_00962,NF006158,COG1191	N/A	N/A	N/A	N/A
PHROG	UHGV-0019948_42	phrog_93	45.5	0.00000000000082	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0019948_42	UniRef90_A0A6M3L522	56.2	0.0000000948	Putative VRR-NUC domain-containing protein	N/A
COG	UHGV-0019948_42	COG1591	N/A	N/A	Holliday junction resolvase Hjc, archaeal type	N/A
PHROG	UHGV-0019948_43	phrog_62	200.6	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0019948_43	UniRef90_A0A7X7BY88	340.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-0019948_43	1280676.AUJO01000007_gene2148	155.0	7.38e-37	SNF2 family N-terminal domain	N/A
Pfam	UHGV-0019948_43	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-0019948_43	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0019948_43	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-0019948_43	PF04851,PF16203,MF_01821,NF041790,COG0553	N/A	N/A	N/A	N/A
KOfam	UHGV-0019948_45	K01447	49.4	0.000000000000076	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0019948_45	phrog_20388	280.8	0	endolysin	lysis
UniRef90	UHGV-0019948_45	UniRef90_A0A1C6D6B1	356.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0019948_45	665956.HMPREF1032_00684	290.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0019948_45	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0019948_45	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
structural_annotation	UHGV-0019948_45	PF01510,MF_04111,NF008758,COG3023	N/A	N/A	N/A	N/A
PHROG	UHGV-0019948_48	phrog_37604	138.0	3.30006e-41	N/A	unknown function
eggNOG-mapper	UHGV-0019948_48	1232443.BAIA02000078_gene10	110.0	2.16e-28	N/A	N/A
eggNOG-mapper	UHGV-0019948_50	1519439.JPJG01000060_gene1892	137.0	4.14e-30	Collagen triple helix repeat (20 copies)	N/A
Pfam	UHGV-0019948_50	PF13306	N/A	N/A	BspA type Leucine rich repeat region (6 copies)	LRR_5
COG	UHGV-0019948_50	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
KOfam	UHGV-0019948_52	K00806	266.7	0	uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]	N/A
UniRef90	UHGV-0019948_52	UniRef90_UPI00102FD0EC	292.0	0	polyprenyl diphosphate synthase	N/A
eggNOG-mapper	UHGV-0019948_52	1242969.ATCC51562_1804	186.0	0	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids	N/A
Pfam	UHGV-0019948_52	PF01255	N/A	N/A	Putative undecaprenyl diphosphate synthase	Prenyltransf
NCBIFam	UHGV-0019948_52	TIGR00055.1	N/A	N/A	polyprenyl diphosphate synthase	N/A
COG	UHGV-0019948_52	COG0020	N/A	N/A	Undecaprenyl pyrophosphate synthase	N/A
HAMAP	UHGV-0019948_52	MF_01139	N/A	N/A	Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) [uppS]	N/A
structural_annotation	UHGV-0019948_52	PF01255,MF_01139,NF011414,COG0020	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0019948_54	1499967.BAYZ01000016_gene6532	76.6	0.00000000000399	cellulose 1,4-beta-cellobiosidase activity	N/A
COG	UHGV-0019948_54	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
PHROG	UHGV-0019948_57	phrog_1194	56.5	4.1e-16	N/A	unknown function
UniRef90	UHGV-0019948_57	UniRef90_A0A0R1Q5P9	54.7	0.000000379	N/A	N/A
structural_annotation	UHGV-0019948_57	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0019948_58	phrog_973	49.1	0.000000000000086	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0019948_58	697281.Mahau_0585	122.0	1.34e-24	tape measure	N/A
Pfam	UHGV-0019948_58	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0019948_58	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0019948_58	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
PHROG	UHGV-0019948_60	phrog_88	168.5	0	major tail protein	tail
UniRef90	UHGV-0019948_60	UniRef90_A0A7X7BYA3	211.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0019948_60	1329516.JPST01000016_gene403	152.0	5.68927e-43	Phage major tail protein phi13	N/A
Pfam	UHGV-0019948_60	PF04630	N/A	N/A	Phage tail tube protein	Phage_TTP_1
NCBIFam	UHGV-0019948_60	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-0019948_60	COG5184	N/A	N/A	Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins	N/A
structural_annotation	UHGV-0019948_60	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
Pfam	UHGV-0019948_61	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-0019948_63	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0019948_64	phrog_1732	56.5	7.2e-16	N/A	unknown function
PHROG	UHGV-0019948_66	phrog_1005	288.3	0	major head protein	head and packaging
UniRef90	UHGV-0019948_66	UniRef90_A0A316D4V5	288.0	0	Major capsid protein E	N/A
eggNOG-mapper	UHGV-0019948_66	1499967.BAYZ01000197_gene3056	122.0	1.74e-29	N/A	N/A
Pfam	UHGV-0019948_66	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-0019948_66	PF03864,MF_04133,NF041162,COG1659	N/A	N/A	N/A	N/A
PHROG	UHGV-0019948_67	phrog_673	50.1	0.000000000000048	head scaffolding protein	head and packaging
Pfam	UHGV-0019948_67	PF09956	N/A	N/A	N/A	DUF2190
PHROG	UHGV-0019948_69	phrog_1530	91.4	1.5e-26	DNA methyltransferase	other
UniRef90	UHGV-0019948_69	UniRef90_A0A7X7BY63	152.0	1.079e-43	Peptidase_S78_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0019948_69	478749.BRYFOR_07609	123.0	4.78e-33	Putative phage serine protease XkdF	N/A
Pfam	UHGV-0019948_69	PF14550	N/A	N/A	Putative phage serine protease XkdF	Peptidase_S78_2
PHROG	UHGV-0019948_70	phrog_113	183.3	0	portal protein	head and packaging
UniRef90	UHGV-0019948_70	UniRef90_A0A173Z568	303.0	0	Mu-like prophage protein gp29	N/A
eggNOG-mapper	UHGV-0019948_70	1235793.C809_02225	308.0	0	Mu-like prophage protein gp29	N/A
Pfam	UHGV-0019948_70	PF06074	N/A	N/A	N/A	DUF935
COG	UHGV-0019948_70	COG4383	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0019948_70	PF06074,MF_04135,TIGR01537,COG4383	N/A	N/A	N/A	N/A
PHROG	UHGV-0019948_71	phrog_979	293.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-0019948_71	UniRef90_A0A7X7BY57	485.0	0	Terminase_6C domain-containing protein	N/A
eggNOG-mapper	UHGV-0019948_71	1444711.CCJF01000003_gene10	162.0	3.09967e-42	N/A	N/A
Pfam	UHGV-0019948_71	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0019948_71	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-0019948_71	COG5362	N/A	N/A	Phage terminase large subunit	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0019948	Yes	64,684	49	97	1