vOTU vOTU-079708

vOTU: vOTU-079708

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-079708
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-01017 → vGENUS-01009 → vSUBGEN-00667 → vOTU-079708
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → UBA738 → UBA738 sp003522945
Host range breadth	Species
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0052316
Biosample ID	SAMEA2338819
Genome length (bp)	29,768 bps
CheckV completeness	99.90% (High-quality)
CDS count	44
CDS density	92.18%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → UBA738 → UBA738 sp003522945	Total connections	144	Host agreement	97.22
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → UBA738 → UBA738 sp003522945	Total connections	7	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0052316_2	K22300	41.8	0.000000000017	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0052316_2	phrog_6499	119.5	1.4e-35	transcriptional regulator	transcription regulation
UniRef90	UHGV-0052316_2	UniRef90_A0A2N2CPV3	121.0	2.83e-32	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0052316_2	742738.HMPREF9460_04043	108.0	1.05e-27	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0052316_2	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0052316_2	COG1813	N/A	N/A	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	N/A
structural_annotation	UHGV-0052316_2	PF01381,MF_00535,NF040522,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0052316_3	K07729	49.1	0.00000000000013	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0052316_3	phrog_3	46.8	0.0000000000013	transcriptional repressor	transcription regulation
UniRef90	UHGV-0052316_3	UniRef90_UPI00137B8D1C	58.5	0.000000000733	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0052316_3	1122970.AUHC01000018_gene2652	50.1	0.00000276	Helix-turn-helix domain	N/A
Pfam	UHGV-0052316_3	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0052316_3	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
KOfam	UHGV-0052316_4	K07729	48.1	0.00000000000025	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0052316_4	phrog_8	59.7	7.4e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0052316_4	UniRef90_UPI00083DB311	63.2	0.000000000134	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0052316_4	293826.Amet_2613	61.2	0.000000000206	peptidyl-tyrosine sulfation	N/A
Pfam	UHGV-0052316_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0052316_4	COG1813	N/A	N/A	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	N/A
structural_annotation	UHGV-0052316_4	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0052316_5	33035.JPJF01000055_gene1671	50.4	0.00000441	Cro/C1-type HTH DNA-binding domain	N/A
COG	UHGV-0052316_5	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0052316_5	PF13443,TIGR03070,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0052316_7	K14059	168.4	0	int; integrase	N/A
PHROG	UHGV-0052316_7	phrog_1	148.2	6.5861e-44	integrase	integration and excision
UniRef90	UHGV-0052316_7	UniRef90_A0A3D1VH24	234.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0052316_7	742738.HMPREF9460_04031	208.0	0	Phage integrase family	N/A
Pfam	UHGV-0052316_7	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0052316_7	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0052316_7	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0052316_7	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0052316_8	phrog_1129	81.7	5.7e-24	holin	lysis
UniRef90	UHGV-0052316_8	UniRef90_A0A1H3XEH1	106.0	2.58e-28	Phage holin family Hol44, holin superfamily V	N/A
eggNOG-mapper	UHGV-0052316_8	1007096.BAGW01000036_gene2663	98.6	7.63e-26	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0052316_8	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0052316_8	PF06946	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0052316_9	33035.JPJF01000090_gene94	52.0	0.000000305	N/A	N/A
PHROG	UHGV-0052316_10	phrog_21357	112.5	2.7e-33	endolysin	lysis
UniRef90	UHGV-0052316_10	UniRef90_A0A7X5D2C6	222.0	0	LysM peptidoglycan-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0052316_10	243164.DET1070	224.0	0	SMART Glycoside hydrolase, family 25 subgroup	N/A
Pfam	UHGV-0052316_10	PF05257	N/A	N/A	CHAP domain	CHAP
Pfam	UHGV-0052316_10	PF08230	N/A	N/A	CW_7 repeat	CW_7
COG	UHGV-0052316_10	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-0052316_10	PF10030,TIGR02594,COG4322	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0052316_13	PF14594,TIGR01646,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0052316_14	phrog_13564	40.0	0.000000000042	minor tail protein	tail
structural_annotation	UHGV-0052316_14	PF16774,PF20753,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0052316_15	phrog_5493	116.9	1.2e-34	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0052316_15	509191.AEDB02000020_gene3249	60.8	0.000000881	tail tape measure protein, TP901	N/A
COG	UHGV-0052316_15	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0052316_16	PF11836,TIGR01674	N/A	N/A	N/A	N/A
PHROG	UHGV-0052316_17	phrog_88	57.9	1.3e-16	major tail protein	tail
UniRef90	UHGV-0052316_17	UniRef90_R5EB96	170.0	0	Phage major tail protein phi13 family	N/A
structural_annotation	UHGV-0052316_17	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0052316_18	phrog_5	50.0	0.000000000000074	tail completion or Neck1 protein	connector
eggNOG-mapper	UHGV-0052316_18	349161.Dred_2601	54.3	0.000000289	Phage protein, HK97 gp10 family	N/A
structural_annotation	UHGV-0052316_18	TIGR01725	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0052316_19	PF11367,MF_00632	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0052316_20	349161.Dred_2602	53.5	0.000000152	N/A	N/A
structural_annotation	UHGV-0052316_20	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0052316_21	phrog_2550	47.0	0.00000000000029	N/A	unknown function
eggNOG-mapper	UHGV-0052316_21	588581.Cpap_1271	50.8	0.00000063	N/A	N/A
PHROG	UHGV-0052316_22	phrog_10	78.6	6e-23	major head protein	head and packaging
UniRef90	UHGV-0052316_22	UniRef90_A0A1C5W5F9	186.0	0	Phage major capsid protein, HK97 family	N/A
eggNOG-mapper	UHGV-0052316_22	324057.Pjdr2_1543	96.3	6.71e-19	Phage capsid family	N/A
Pfam	UHGV-0052316_22	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0052316_22	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-0052316_22	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0052316_23	K06904	148.1	8.26766e-44	N/A	N/A
PHROG	UHGV-0052316_23	phrog_80	171.1	0	head maturation protease	head and packaging
UniRef90	UHGV-0052316_23	UniRef90_A0A316NLC8	225.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0052316_23	398512.JQKC01000009_gene450	209.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-0052316_23	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0052316_23	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0052316_23	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0052316_23	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0052316_24	phrog_12	171.3	0	portal protein	head and packaging
UniRef90	UHGV-0052316_24	UniRef90_R5ENV9	436.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0052316_24	491915.Aflv_0662	387.0	0	Phage portal protein	N/A
Pfam	UHGV-0052316_24	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0052316_24	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0052316_24	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0052316_24	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0052316_25	phrog_9	239.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0052316_25	UniRef90_R5EM34	735.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0052316_25	1226322.HMPREF1545_00113	510.0	0	Phage Terminase	N/A
Pfam	UHGV-0052316_25	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0052316_25	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0052316_25	PF20441,PF03354,MF_04013,TIGR01547,COG4626	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0052316_26	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0052316_27	693746.OBV_19990	58.9	0.00000000191	Phage terminase, small subunit	N/A
COG	UHGV-0052316_27	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
PHROG	UHGV-0052316_28	phrog_21498	271.5	0	N/A	unknown function
UniRef90	UHGV-0052316_28	UniRef90_C7MM70	306.0	0	ParB-like nuclease	N/A
eggNOG-mapper	UHGV-0052316_28	469378.Ccur_02830	306.0	0	DNA binding	N/A
PADLOC	UHGV-0052316_28	MTase_II_00015	120.1	2.8e-35	Type II methyltransferase	RM
Pfam	UHGV-0052316_28	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0052316_28	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0052316_28	PF02195,PF05869,MF_02015,TIGR00180,TIGR01712,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-0052316_29	phrog_119	64.3	1.7e-18	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0052316_29	UniRef90_U4QWM3	111.0	4.24e-30	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0052316_29	588581.Cpap_1277	112.0	3.53e-31	HNH nucleases	N/A
COG	UHGV-0052316_29	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0052316_29	TIGR02646	N/A	N/A	N/A	N/A
Pfam	UHGV-0052316_30	PF14205	N/A	N/A	Cysteine-rich KTR	Cys_rich_KTR
PHROG	UHGV-0052316_31	phrog_3584	149.1	2.52234e-44	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0052316_31	1203606.HMPREF1526_00985	176.0	0	N/A	N/A
structural_annotation	UHGV-0052316_31	PF01446,NF041486	N/A	N/A	N/A	N/A
PHROG	UHGV-0052316_34	phrog_18306	42.4	0.000000000012	N/A	unknown function
structural_annotation	UHGV-0052316_34	PF01423,MF_00257,NF001963,COG1958	N/A	N/A	N/A	N/A
PHROG	UHGV-0052316_36	phrog_3777	43.0	0.0000000000038	N/A	unknown function
UniRef90	UHGV-0052316_36	UniRef90_UPI001D08CA4B	71.6	0.0000000000000364	N/A	N/A
eggNOG-mapper	UHGV-0052316_36	665956.HMPREF1032_02664	58.9	0.0000000112	N/A	N/A
Pfam	UHGV-0052316_36	PF12957	N/A	N/A	N/A	DUF3846
COG	UHGV-0052316_36	COG4734	N/A	N/A	Antirestriction protein ArdA	N/A
structural_annotation	UHGV-0052316_36	PF12957	N/A	N/A	N/A	N/A
KOfam	UHGV-0052316_37	K03497	88.9	1.1e-25	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0052316_37	phrog_27290	154.8	0	N/A	unknown function
UniRef90	UHGV-0052316_37	UniRef90_A0A846K2S5	138.0	1.33e-34	ParB/RepB/Spo0J family partition protein	N/A
eggNOG-mapper	UHGV-0052316_37	1415774.U728_489	136.0	1.65e-34	Belongs to the ParB family	N/A
Pfam	UHGV-0052316_37	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0052316_37	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0052316_37	PF02195,MF_02015,TIGR04285,COG1475	N/A	N/A	N/A	N/A
KOfam	UHGV-0052316_38	K03496	223.9	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0052316_38	phrog_164	178.7	0	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0052316_38	UniRef90_A0A2N2CMQ6	191.0	0	AAA_31 domain-containing protein	N/A
eggNOG-mapper	UHGV-0052316_38	411463.EUBVEN_00461	166.0	0	CobQ CobB MinD ParA nucleotide binding domain	N/A
Pfam	UHGV-0052316_38	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0052316_38	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0052316_38	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
KOfam	UHGV-0052316_39	K07317	56.8	3.2e-16	K07317; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-0052316_39	phrog_11371	59.1	6.7e-17	N/A	unknown function
UniRef90	UHGV-0052316_39	UniRef90_UPI001C033A7E	144.0	1.07998e-41	N-6 DNA methylase	N/A
eggNOG-mapper	UHGV-0052316_39	1437608.BBIA_1421	83.6	6.17e-18	Type II restriction enzyme, methylase subunits	N/A
Pfam	UHGV-0052316_39	PF02384	N/A	N/A	N-6 DNA Methylase	N6_Mtase
COG	UHGV-0052316_39	COG1002	N/A	N/A	Type II restriction/modification system, endonuclease and methylase domains	N/A
structural_annotation	UHGV-0052316_40	PF01157	N/A	N/A	N/A	N/A
KOfam	UHGV-0052316_41	K02314	261.1	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0052316_41	phrog_19	243.2	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0052316_41	UniRef90_A0A3D1V9Y4	306.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-0052316_41	1007096.BAGW01000033_gene1616	224.0	0	DnaB-like helicase N terminal domain	N/A
Pfam	UHGV-0052316_41	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0052316_41	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0052316_41	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0052316_41	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-0052316_42	phrog_270	107.3	9e-32	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0052316_42	UniRef90_UPI001F33ADD3	197.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0052316_42	693746.OBV_30130	125.0	4.53e-31	N/A	N/A
Pfam	UHGV-0052316_42	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-0052316_42	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0052316_42	PF02295,MF_01819,TIGR04176,COG3355	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0052316	Yes	29,768	63	100	1
UHGV-1404035	No	25,859	63	87	1