vOTU vOTU-079799

vOTU: vOTU-079799

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-079799
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-04042 → vGENUS-21249 → vSUBGEN-42333 → vOTU-079799
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → UMGS1375 → UMGS1375 sp900066615
Host range breadth	Species
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0086460
Biosample ID	SAMEA3449303
Genome length (bp)	35,711 bps
CheckV completeness	91.82% (High-quality)
CDS count	53
CDS density	93.51%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → UMGS1375 → UMGS1375 sp900066615	Total connections	42	Host agreement	76.19
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → UMGS1375 → UMGS1375 sp900551235	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 91.82)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0086460_1	K11062	159.3	0	entD; probable enterotoxin D	N/A
PHROG	UHGV-0086460_1	phrog_1794	259.4	0	amidase	lysis
UniRef90	UHGV-0086460_1	UniRef90_A0A1C5QWL7	447.0	0	N-acetylmuramoyl-L-alanine amidase AmiD	N/A
eggNOG-mapper	UHGV-0086460_1	411470.RUMGNA_02087	378.0	0	N-Acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0086460_1	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0086460_1	PF01832	N/A	N/A	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
COG	UHGV-0086460_1	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0086460_1	PF01510,PF18013,MF_04111,NF008758,COG5632,COG4991	N/A	N/A	N/A	N/A
PHROG	UHGV-0086460_2	phrog_199	88.5	7.5e-26	holin	lysis
UniRef90	UHGV-0086460_2	UniRef90_A0A3D4RB03	253.0	0	Holin	N/A
eggNOG-mapper	UHGV-0086460_2	742740.HMPREF9474_02333	210.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-0086460_2	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0086460_2	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0086460_2	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0086460_2	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0086460_3	1235802.C823_01049	142.0	8.33e-36	N/A	N/A
Pfam	UHGV-0086460_3	PF19789	N/A	N/A	N/A	DUF6273
PHROG	UHGV-0086460_4	phrog_6616	158.8	0	tail protein	tail
eggNOG-mapper	UHGV-0086460_4	397288.C806_00773	61.6	0.000000252	N/A	N/A
PHROG	UHGV-0086460_5	phrog_1194	76.6	2.9e-22	N/A	unknown function
eggNOG-mapper	UHGV-0086460_5	33035.JPJF01000093_gene2242	150.0	1.4013e-45	N/A	N/A
structural_annotation	UHGV-0086460_5	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0086460_6	phrog_1535	368.7	0	tail length tape measure protein	tail
UniRef90	UHGV-0086460_6	UniRef90_A0A2Y9BKW0	735.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0086460_6	33035.JPJF01000093_gene2243	867.0	0	phage tail tape measure protein	N/A
COG	UHGV-0086460_6	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0086460_6	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0086460_7	phrog_8355	82.1	3.7e-24	N/A	unknown function
UniRef90	UHGV-0086460_7	UniRef90_UPI001C031F13	137.0	3.72e-40	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0086460_7	33035.JPJF01000093_gene2244	82.4	1.08e-19	N/A	N/A
PHROG	UHGV-0086460_8	phrog_8300	88.6	5.8e-26	N/A	unknown function
eggNOG-mapper	UHGV-0086460_8	585501.HMPREF6123_0828	84.7	4.41e-20	N/A	N/A
structural_annotation	UHGV-0086460_8	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0086460_9	phrog_820	115.7	2.8e-34	major tail protein	tail
eggNOG-mapper	UHGV-0086460_9	1282664.H354_06691	204.0	0	N/A	N/A
structural_annotation	UHGV-0086460_9	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0086460_10	phrog_2595	81.1	1.2e-23	head-tail connector protein	connector
UniRef90	UHGV-0086460_10	UniRef90_UPI001C00BA9C	249.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0086460_10	483218.BACPEC_01150	128.0	2.35e-36	N/A	N/A
Pfam	UHGV-0086460_10	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-0086460_10	PF12691,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0086460_11	phrog_556	55.2	0.0000000000000012	minor head protein	head and packaging
eggNOG-mapper	UHGV-0086460_11	742740.HMPREF9474_03509	184.0	0	N/A	N/A
PHROG	UHGV-0086460_12	phrog_8710	144.2	3.19496e-43	N/A	unknown function
eggNOG-mapper	UHGV-0086460_12	742740.HMPREF9474_03508	142.0	1.00053e-42	N/A	N/A
structural_annotation	UHGV-0086460_12	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0086460_13	phrog_541	83.6	2.1e-24	head-tail adaptor	connector
eggNOG-mapper	UHGV-0086460_13	1298920.KI911353_gene4848	195.0	0	N/A	N/A
PHROG	UHGV-0086460_14	phrog_422	274.1	0	major head protein	head and packaging
UniRef90	UHGV-0086460_14	UniRef90_UPI001C03381A	626.0	0	phage capsid protein	N/A
eggNOG-mapper	UHGV-0086460_14	663278.Ethha_1589	401.0	0	N/A	N/A
structural_annotation	UHGV-0086460_14	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0086460_15	phrog_2303	135.6	3.9e-40	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-0086460_15	1304866.K413DRAFT_0806	184.0	0	N/A	N/A
PHROG	UHGV-0086460_16	phrog_13199	80.9	9.5e-24	N/A	unknown function
eggNOG-mapper	UHGV-0086460_16	476272.RUMHYD_02851	98.6	1.71e-26	N/A	N/A
PHROG	UHGV-0086460_17	phrog_355	52.8	0.0000000000000073	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0086460_17	UniRef90_UPI000E473058	164.0	0	N/A	N/A
eggNOG-mapper	UHGV-0086460_17	397290.C810_05229	160.0	0	N/A	N/A
structural_annotation	UHGV-0086460_17	PF14359	N/A	N/A	N/A	N/A
PHROG	UHGV-0086460_18	phrog_21498	56.7	4.3e-16	N/A	unknown function
COG	UHGV-0086460_18	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
PHROG	UHGV-0086460_19	phrog_30343	184.3	0	N/A	unknown function
eggNOG-mapper	UHGV-0086460_19	397291.C804_00939	194.0	0	N/A	N/A
structural_annotation	UHGV-0086460_19	PF11039,MF_02210,TIGR03585,COG1670	N/A	N/A	N/A	N/A
PHROG	UHGV-0086460_20	phrog_21498	216.2	0	N/A	unknown function
eggNOG-mapper	UHGV-0086460_20	78346.BRUM_0376	201.0	0	DNA binding	N/A
COG	UHGV-0086460_20	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
PHROG	UHGV-0086460_21	phrog_3675	96.7	1.3e-28	N/A	unknown function
UniRef90	UHGV-0086460_21	UniRef90_A0A416Q246	189.0	0	Dihydrolipoyl dehydrogenase	N/A
eggNOG-mapper	UHGV-0086460_21	585501.HMPREF6123_0838	142.0	1.39009e-42	YjcQ protein	N/A
Pfam	UHGV-0086460_21	PF09639	N/A	N/A	YjcQ protein	YjcQ
structural_annotation	UHGV-0086460_21	PF09639,TIGR04176,COG2345	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0086460_22	476272.RUMHYD_02848	114.0	3.74e-32	N/A	N/A
structural_annotation	UHGV-0086460_22	PF16244	N/A	N/A	N/A	N/A
PHROG	UHGV-0086460_23	phrog_581	260.6	0	minor head protein	head and packaging
UniRef90	UHGV-0086460_23	UniRef90_UPI0009303339	917.0	0	putative zinc-binding metallopeptidase	N/A
eggNOG-mapper	UHGV-0086460_23	33035.JPJF01000093_gene2255	503.0	0	N/A	N/A
Pfam	UHGV-0086460_23	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
Pfam	UHGV-0086460_23	PF15644	N/A	N/A	Papain fold toxin 1, glutamine deamidase	Gln_amidase
COG	UHGV-0086460_23	COG5585	N/A	N/A	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	N/A
structural_annotation	UHGV-0086460_23	PF06152,PF21814	N/A	N/A	N/A	N/A
PHROG	UHGV-0086460_24	phrog_25639	118.6	1.6e-35	N/A	unknown function
eggNOG-mapper	UHGV-0086460_24	742740.HMPREF9474_03502	85.1	6.36e-21	N/A	N/A
PHROG	UHGV-0086460_25	phrog_533	308.2	0	portal protein	head and packaging
UniRef90	UHGV-0086460_25	UniRef90_UPI001C03775E	1044.0	0	capsid protein	N/A
eggNOG-mapper	UHGV-0086460_25	742740.HMPREF9474_03501	725.0	0	N/A	N/A
structural_annotation	UHGV-0086460_25	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0086460_26	K06909	73.2	4.3e-21	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0086460_26	phrog_10250	53.2	0.0000000000000016	N/A	unknown function
UniRef90	UHGV-0086460_26	UniRef90_UPI001C02BD5C	772.0	0	terminase	N/A
eggNOG-mapper	UHGV-0086460_26	1298920.KI911353_gene4856	647.0	0	Phage terminase, large subunit, PBSX family	N/A
COG	UHGV-0086460_26	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0086460_26	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0086460_27	742740.HMPREF9474_03500	95.1	2.04e-22	Phage terminase, large subunit, PBSX family	N/A
COG	UHGV-0086460_27	COG1783	N/A	N/A	Phage terminase large subunit	N/A
KOfam	UHGV-0086460_28	K07474	137.2	2.2e-40	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0086460_28	phrog_51	162.4	0	terminase small subunit	head and packaging
UniRef90	UHGV-0086460_28	UniRef90_UPI001C0332B0	304.0	0	terminase small subunit	N/A
eggNOG-mapper	UHGV-0086460_28	1304866.K413DRAFT_0812	218.0	0	Terminase small subunit	N/A
Pfam	UHGV-0086460_28	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0086460_28	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0086460_28	PF03592,COG3728	N/A	N/A	N/A	N/A
PHROG	UHGV-0086460_29	phrog_36	84.2	1.7e-24	transcriptional regulator	transcription regulation
UniRef90	UHGV-0086460_29	UniRef90_A0A564VXK1	160.0	0	Sigma70_r4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0086460_29	1235799.C818_04213	102.0	7.28e-26	sigma factor activity	N/A
Pfam	UHGV-0086460_29	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
COG	UHGV-0086460_29	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0086460_29	PF07374,MF_00674,NF007227,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-0086460_33	phrog_3205	199.2	0	N/A	unknown function
UniRef90	UHGV-0086460_33	UniRef90_E6EWD7	95.5	4.08e-21	EF-hand domain-containing protein	N/A
eggNOG-mapper	UHGV-0086460_33	1158602.I590_02965	100.0	8.11e-24	N/A	N/A
PHROG	UHGV-0086460_34	phrog_15198	43.0	0.0000000000057	N/A	unknown function
UniRef90	UHGV-0086460_34	UniRef90_UPI0019173E66	350.0	0	N/A	N/A
eggNOG-mapper	UHGV-0086460_34	478749.BRYFOR_07594	107.0	4.64e-26	N/A	N/A
Pfam	UHGV-0086460_34	PF04448	N/A	N/A	N/A	DUF551
PHROG	UHGV-0086460_36	phrog_8841	556.4	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0086460_36	UniRef90_A0A1C5QSA5	1235.0	0	Superfamily II helicase and inactivated derivatives	N/A
eggNOG-mapper	UHGV-0086460_36	476272.RUMHYD_01742	788.0	0	N/A	N/A
Pfam	UHGV-0086460_36	PF06048	N/A	N/A	N/A	DUF927
Pfam	UHGV-0086460_36	PF18662	N/A	N/A	Cch helix turn helix domain	HTH_56
COG	UHGV-0086460_36	COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0086460_36	PF06048,PF18662,MF_00016,NF011296,COG5519	N/A	N/A	N/A	N/A
KOfam	UHGV-0086460_37	K02316	66.6	4.3e-19	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-0086460_37	phrog_11992	165.7	0	N/A	unknown function
UniRef90	UHGV-0086460_37	UniRef90_A0A1C5QS34	295.0	0	DNA primase	N/A
eggNOG-mapper	UHGV-0086460_37	476272.RUMHYD_01741	205.0	0	CHC2 zinc finger	N/A
PADLOC	UHGV-0086460_37	drt-UG29	53.0	0.0000000000000034	DRT	DRT
Pfam	UHGV-0086460_37	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
COG	UHGV-0086460_37	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-0086460_37	PF01807,PF00401	N/A	N/A	N/A	N/A
PHROG	UHGV-0086460_38	phrog_3490	148.5	3.36312e-44	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0086460_38	UniRef90_A0A1C5QRV1	349.0	0	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0086460_38	411460.RUMTOR_02068	262.0	0	N/A	N/A
Pfam	UHGV-0086460_38	PF02732	N/A	N/A	ERCC4 domain	ERCC4
structural_annotation	UHGV-0086460_38	PF03834,NF040956,COG1948	N/A	N/A	N/A	N/A
KOfam	UHGV-0086460_39	K03111	126.5	3.4e-37	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0086460_39	phrog_44	137.8	6.89999e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0086460_39	UniRef90_A0A1C5QS41	278.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0086460_39	658655.HMPREF0988_02584	201.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0086460_39	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0086460_39	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0086460_39	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0086460_39	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0086460_39	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0086460_40	phrog_155	116.5	1.1e-34	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0086460_40	UniRef90_A0A1C5QRZ7	459.0	0	ERF superfamily	N/A
eggNOG-mapper	UHGV-0086460_40	411460.RUMTOR_02066	227.0	0	ERF superfamily	N/A
Pfam	UHGV-0086460_40	PF04404	N/A	N/A	ERF superfamily	ERF
COG	UHGV-0086460_40	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0086460_40	PF04404,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0086460_41	phrog_674	191.0	0	N/A	unknown function
UniRef90	UHGV-0086460_41	UniRef90_A0A373SW80	239.0	0	N/A	N/A
eggNOG-mapper	UHGV-0086460_41	411460.RUMTOR_02065	217.0	0	N/A	N/A
Pfam	UHGV-0086460_41	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-0086460_41	PF07083	N/A	N/A	N/A	N/A
UniRef90	UHGV-0086460_42	UniRef90_UPI00156FCC15	199.0	0	helix-turn-helix domain-containing protein	N/A
COG	UHGV-0086460_42	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0086460_42	PF13384,COG1710	N/A	N/A	N/A	N/A
PHROG	UHGV-0086460_47	phrog_31760	66.7	2.1e-19	N/A	unknown function
UniRef90	UHGV-0086460_49	UniRef90_UPI00156EFEB1	80.9	2.5e-18	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0086460_49	887929.HMP0721_1290	73.2	2.73e-16	Helix-turn-helix domain of resolvase	N/A
Pfam	UHGV-0086460_49	PF02796	N/A	N/A	Helix-turn-helix domain of resolvase	HTH_7
structural_annotation	UHGV-0086460_49	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0086460_50	K23779	53.3	0.000000000000006	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
PHROG	UHGV-0086460_50	phrog_8	51.4	0.000000000000027	transcriptional regulator	transcription regulation
UniRef90	UHGV-0086460_50	UniRef90_A0A1C5QQD0	212.0	0	Transcriptional regulator, y4mF family	N/A
eggNOG-mapper	UHGV-0086460_50	556261.HMPREF0240_01268	96.3	3.33e-24	Helix-turn-helix	N/A
Pfam	UHGV-0086460_50	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0086460_50	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0086460_50	PF12844,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0086460_51	phrog_87	63.9	2.2e-18	metallo-protease	other
UniRef90	UHGV-0086460_51	UniRef90_UPI0015D3F2DD	224.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0086460_51	556261.HMPREF0240_01267	162.0	0	Zn peptidase	N/A
Pfam	UHGV-0086460_51	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0086460_51	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0086460_51	PF06114,COG2856	N/A	N/A	N/A	N/A
PHROG	UHGV-0086460_52	phrog_1847	506.2	0	N/A	unknown function
UniRef90	UHGV-0086460_52	UniRef90_UPI001D07EED3	563.0	0	N/A	N/A
eggNOG-mapper	UHGV-0086460_52	1235792.C808_05258	470.0	0	N/A	N/A
Pfam	UHGV-0086460_52	PF13250	N/A	N/A	N/A	DUF4041
Pfam	UHGV-0086460_52	PF13455	N/A	N/A	Meiotically up-regulated gene 113	MUG113
COG	UHGV-0086460_52	COG0172	N/A	N/A	Seryl-tRNA synthetase	N/A
structural_annotation	UHGV-0086460_52	PF13250,PF19824,MF_01506	N/A	N/A	N/A	N/A
PHROG	UHGV-0086460_53	phrog_14333	111.7	3.6e-33	N/A	unknown function
UniRef90	UHGV-0086460_53	UniRef90_UPI000E4481CD	180.0	0	N/A	N/A
eggNOG-mapper	UHGV-0086460_53	521003.COLINT_03302	134.0	4.00001e-40	N/A	N/A
Pfam	UHGV-0086460_53	PF13711	N/A	N/A	N/A	DUF4160
structural_annotation	UHGV-0086460_53	PF13711	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0086460	Yes	35,711	44	92	1
UHGV-2127550	No	35,923	44	93	1