vOTU vOTU-079853

vOTU: vOTU-079853

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-079853
Number of genomes	2
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp003526955
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00239 → vGENUS-01438 → vSUBGEN-27386 → vOTU-079853
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp003526955
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0048104
Biosample ID	N/A
Genome length (bp)	30,346 bps
CheckV completeness	99.90% (High-quality)
CDS count	47
CDS density	89.69%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp003526955	Total connections	2168	Host agreement	86.07
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp003526955	Total connections	69	Host agreement	89.86

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0048104_1	K14059	191.0	0	int; integrase	N/A
PHROG	UHGV-0048104_1	phrog_1	168.1	0	integrase	integration and excision
UniRef90	UHGV-0048104_1	UniRef90_UPI00164B8B01	396.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0048104_1	1095750.HMPREF9970_1688	239.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0048104_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0048104_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0048104_1	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0048104_2	UniRef90_A0A374DTF3	107.0	5.74e-27	N/A	N/A
PHROG	UHGV-0048104_3	phrog_1914	144.5	6.7963e-43	N/A	unknown function
UniRef90	UHGV-0048104_3	UniRef90_A0A373XNL4	279.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0048104_3	1160721.RBI_I01604	161.0	0	N/A	N/A
Pfam	UHGV-0048104_3	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0048104_3	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0048104_3	PF06114,COG2856	N/A	N/A	N/A	N/A
UniRef90	UHGV-0048104_4	UniRef90_A0A373XLN2	121.0	1.01e-32	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0048104_4	999413.HMPREF1094_00245	72.0	0.000000000000288	Peptidase S24-like	N/A
COG	UHGV-0048104_4	COG2932	N/A	N/A	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	N/A
structural_annotation	UHGV-0048104_4	PF05339,NF007257,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0048104_5	UniRef90_A0A374DVN3	151.0	0	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0048104_5	411902.CLOBOL_02554	60.1	0.0000000000454	N/A	N/A
structural_annotation	UHGV-0048104_6	PF13443,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0048104_7	COG1862	N/A	N/A	N/A	N/A
PHROG	UHGV-0048104_12	phrog_8470	262.3	0	N/A	unknown function
UniRef90	UHGV-0048104_12	UniRef90_A0A1M7BII1	159.0	1.57e-37	PcfJ-like protein	N/A
eggNOG-mapper	UHGV-0048104_12	1235790.C805_00306	151.0	1.51e-35	PcfJ-like protein	N/A
Pfam	UHGV-0048104_12	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0048104_12	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0048104_13	phrog_15609	123.3	5.9e-37	N/A	unknown function
UniRef90	UHGV-0048104_13	UniRef90_A0A373SLQ6	105.0	2.01e-22	N/A	N/A
eggNOG-mapper	UHGV-0048104_13	1514668.JOOA01000001_gene225	67.4	0.000000000985	N/A	N/A
structural_annotation	UHGV-0048104_13	PF11300,NF038070	N/A	N/A	N/A	N/A
PHROG	UHGV-0048104_15	phrog_24518	78.0	1.2e-22	N/A	unknown function
eggNOG-mapper	UHGV-0048104_15	1519439.JPJG01000077_gene922	99.0	4.83e-23	N/A	N/A
PHROG	UHGV-0048104_16	phrog_824	147.5	3.92364e-44	N/A	unknown function
UniRef90	UHGV-0048104_16	UniRef90_A0A3D3D6C6	199.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0048104_16	397288.C806_00096	153.0	0	VRR_NUC	N/A
Pfam	UHGV-0048104_16	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-0048104_16	PF08774	N/A	N/A	N/A	N/A
PHROG	UHGV-0048104_18	phrog_3584	151.1	7.00649e-45	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0048104_18	1235800.C819_00515	83.6	2.44e-16	N/A	N/A
structural_annotation	UHGV-0048104_18	PF21578,NF041486	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0048104_20	1304880.JAGB01000002_gene2225	53.5	0.000000353	N/A	N/A
structural_annotation	UHGV-0048104_20	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0048104_21	phrog_1066	115.5	2.6e-34	N/A	unknown function
eggNOG-mapper	UHGV-0048104_21	1203606.HMPREF1526_00982	98.6	3.56e-25	N/A	N/A
PHROG	UHGV-0048104_22	phrog_9	395.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0048104_22	UniRef90_A0A374NB45	899.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0048104_22	1203606.HMPREF1526_00981	723.0	0	Terminase	N/A
Pfam	UHGV-0048104_22	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0048104_22	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0048104_22	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0048104_22	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0048104_23	phrog_12	174.6	0	portal protein	head and packaging
UniRef90	UHGV-0048104_23	UniRef90_A0A374NAE1	662.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0048104_23	626523.GCWU000342_01027	389.0	0	Portal protein	N/A
Pfam	UHGV-0048104_23	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0048104_23	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0048104_23	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0048104_24	K01358	120.0	3.1e-35	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0048104_24	phrog_94	187.3	0	head maturation protease	head and packaging
UniRef90	UHGV-0048104_24	UniRef90_A0A374NBM3	381.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0048104_24	1203606.HMPREF1526_00979	174.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0048104_24	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0048104_24	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0048104_24	PF00574,MF_00444,NF011091,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0048104_25	phrog_10	158.1	0	major head protein	head and packaging
UniRef90	UHGV-0048104_25	UniRef90_A0A374N9V9	726.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0048104_25	1280689.AUJC01000011_gene1521	329.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0048104_25	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0048104_25	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0048104_25	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0048104_25	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0048104_26	phrog_5223	60.1	2.8e-17	neck protein	connector
UniRef90	UHGV-0048104_26	UniRef90_UPI0019613678	58.5	0.00000000952	head-tail connector protein	N/A
eggNOG-mapper	UHGV-0048104_26	561177.ANHYDRO_01411	51.6	0.000000252	N/A	N/A
structural_annotation	UHGV-0048104_26	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0048104_27	phrog_1951	88.7	4.5e-26	head-tail adaptor	connector
UniRef90	UHGV-0048104_27	UniRef90_A0A374MZF9	153.0	0	Phage head-tail adapter protein	N/A
eggNOG-mapper	UHGV-0048104_27	768704.Desmer_4460	64.7	0.00000000000409	head-tail adaptor	N/A
NCBIFam	UHGV-0048104_27	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-0048104_27	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0048104_27	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-0048104_28	UniRef90_UPI001A9B6FBF	164.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0048104_28	1414720.CBYM010000040_gene1650	131.0	2.22e-37	N/A	N/A
Pfam	UHGV-0048104_28	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0048104_28	TIGR01725	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0048104_29	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0048104_30	phrog_885	155.9	0	major tail protein	tail
UniRef90	UHGV-0048104_30	UniRef90_A0A3D3W9F4	172.0	0	CBM_X2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0048104_30	411465.PEPMIC_00741	167.0	0	N/A	N/A
structural_annotation	UHGV-0048104_30	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0048104_33	phrog_23464	257.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0048104_33	1378168.N510_03078	181.0	0	Tail tape measure protein, TP901 family	N/A
COG	UHGV-0048104_33	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0048104_33	COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0048104_34	phrog_33	83.8	3.6e-24	distal tail protein Dit	tail
UniRef90	UHGV-0048104_34	UniRef90_UPI00189E4294	82.8	0.00000000000000202	phage tail family protein	N/A
eggNOG-mapper	UHGV-0048104_34	1160721.RBI_I01575	81.3	0.00000000000000123	Phage tail protein	N/A
COG	UHGV-0048104_34	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0048104_34	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0048104_35	phrog_1067	117.7	1e-34	minor head protein	head and packaging
UniRef90	UHGV-0048104_35	UniRef90_A0A348ZBV6	208.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0048104_35	1160721.RBI_I01574	122.0	1.46e-27	Prophage endopeptidase tail	N/A
Pfam	UHGV-0048104_35	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
COG	UHGV-0048104_35	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0048104_35	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0048104_36	PF10651,PF01664	N/A	N/A	N/A	N/A
KOfam	UHGV-0048104_38	K07273	193.1	0	acm; lysozyme	N/A
PHROG	UHGV-0048104_38	phrog_291	169.5	0	endolysin	lysis
UniRef90	UHGV-0048104_38	UniRef90_R6NXV5	406.0	0	Glycoside Hydrolase Family 25-like lysozyme/endolysin	N/A
eggNOG-mapper	UHGV-0048104_38	246199.CUS_5914	173.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0048104_38	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0048104_38	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0048104_38	PF01183,TIGR04303,COG3757,COG5492	N/A	N/A	N/A	N/A
PHROG	UHGV-0048104_39	phrog_1863	65.7	1.1e-19	N/A	unknown function
UniRef90	UHGV-0048104_39	UniRef90_UPI001F223E8B	93.6	1.9e-23	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-0048104_39	1226322.HMPREF1545_04027	74.3	1.27e-16	N/A	N/A
PHROG	UHGV-0048104_40	phrog_443	55.1	0.0000000000000022	holin	lysis
UniRef90	UHGV-0048104_40	UniRef90_R6MWB0	116.0	6.31e-33	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0048104_40	1235797.C816_04172	82.4	3.8e-20	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0048104_40	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0048104_40	PF16945	N/A	N/A	N/A	N/A
KOfam	UHGV-0048104_41	K06223	222.9	0	dam; DNA adenine methylase [EC:2.1.1.72]	N/A
PHROG	UHGV-0048104_41	phrog_56	183.5	0	DNA methyltransferase	other
UniRef90	UHGV-0048104_41	UniRef90_A0A1C6HHY1	420.0	0	Site-specific DNA-methyltransferase (adenine-specific)	N/A
eggNOG-mapper	UHGV-0048104_41	742733.HMPREF9469_02855	272.0	0	COG COG0338 Site-specific DNA methylase	N/A
PADLOC	UHGV-0048104_41	MTase_II_00080	125.7	5e-37	Type II methyltransferase	RM
Pfam	UHGV-0048104_41	PF02086	N/A	N/A	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
COG	UHGV-0048104_41	COG0338	N/A	N/A	DNA-adenine methylase	N/A
structural_annotation	UHGV-0048104_41	PF02086,MF_00934,TIGR00571,COG0338	N/A	N/A	N/A	N/A
KOfam	UHGV-0048104_42	K07727	64.9	2.1e-18	K07727; putative transcriptional regulator	N/A
UniRef90	UHGV-0048104_42	UniRef90_A0A413QHG2	132.0	8.07e-39	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0048104_42	411471.SUBVAR_06679	106.0	4.1e-29	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0048104_42	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0048104_42	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-0048104_42	PF13443,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0048104_43	K06400	260.4	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0048104_43	phrog_95	264.1	0	integrase	integration and excision
UniRef90	UHGV-0048104_43	UniRef90_UPI001E5635E3	257.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0048104_43	1157490.EL26_02935	197.0	0	Recombinase	N/A
Pfam	UHGV-0048104_43	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0048104_43	PF07508	N/A	N/A	Recombinase	Recombinase
COG	UHGV-0048104_43	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0048104_43	PF00239,PF07508,NF041201,COG1961	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0048104	Yes	30,346	38	100	1
UHGV-1679465	No	17,850	38	49	1