vOTU vOTU-079930

vOTU: vOTU-079930

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-079930
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → CAG-488 → ERR7738158_bin.13
Taxonomy (UHGV)	vFAM-00022 → vSUBFAM-01064 → vGENUS-13282 → vSUBGEN-21191 → vOTU-079930
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → CAG-488
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0033407
Biosample ID	SAMEA4765669
Genome length (bp)	40,019 bps
CheckV completeness	99.90% (High-quality)
CDS count	50
CDS density	88.22%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → CAG-488	Total connections	95	Host agreement	91.58
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → CAG-488 → ERR7738158_bin.13	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0033407_1	UniRef90_A0A355V128	55.8	0.0000000619	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0033407_1	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0033407_1	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
UniRef90	UHGV-0033407_2	UniRef90_UPI0013026BAE	445.0	0	type VI-D CRISPR-associated RNA-guided ribonuclease Cas13d	N/A
eggNOG-mapper	UHGV-0033407_2	641112.ACOK01000100_gene374	521.0	0	N/A	N/A
PADLOC	UHGV-0033407_2	Cas13d	866.2	0	CAS-VI-D; effector__SPE	CRISPR-CAS
NCBIFam	UHGV-0033407_2	NF038189.1	N/A	N/A	type VI-D CRISPR-associated RNA-guided ribonuclease Cas13d	N/A
structural_annotation	UHGV-0033407_2	NF038189	N/A	N/A	N/A	N/A
KOfam	UHGV-0033407_3	K03328	109.9	2.5e-32	TC.PST; polysaccharide transporter, PST family	N/A
UniRef90	UHGV-0033407_3	UniRef90_A0A358M5G6	850.0	0	Polysacc_synt_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0033407_3	1235835.C814_02064	315.0	0	Polysaccharide biosynthesis protein	N/A
Pfam	UHGV-0033407_3	PF01943	N/A	N/A	Polysaccharide biosynthesis protein	Polysacc_synt
Pfam	UHGV-0033407_3	PF14667	N/A	N/A	Polysaccharide biosynthesis C-terminal domain	Polysacc_synt_C
COG	UHGV-0033407_3	COG2244	N/A	N/A	Membrane protein involved in the export of O-antigen and teichoic acid	N/A
PHROG	UHGV-0033407_4	phrog_10678	45.3	0.0000000000014	N/A	unknown function
KOfam	UHGV-0033407_5	K01447	63.9	2.9e-18	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0033407_5	phrog_7698	159.1	0	endolysin	lysis
UniRef90	UHGV-0033407_5	UniRef90_R6DZ86	494.0	0	N-acetylmuramoyl-L-alanine amidase domain-containing protein	N/A
eggNOG-mapper	UHGV-0033407_5	1203606.HMPREF1526_01931	210.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0033407_5	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0033407_5	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0033407_5	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0033407_5	PF01510,MF_04111,NF008758,NF038080,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-0033407_6	phrog_263	70.6	1.6e-20	holin	lysis
UniRef90	UHGV-0033407_6	UniRef90_R6E0V9	172.0	0	Holin SPP1 family	N/A
eggNOG-mapper	UHGV-0033407_6	445971.ANASTE_00091	58.9	0.00000000055	SPP1 phage holin	N/A
Pfam	UHGV-0033407_6	PF04688	N/A	N/A	SPP1 phage holin	Holin_SPP1
NCBIFam	UHGV-0033407_6	TIGR01592.1	N/A	N/A	phage holin	N/A
structural_annotation	UHGV-0033407_6	PF04688,TIGR01592	N/A	N/A	N/A	N/A
PHROG	UHGV-0033407_7	phrog_1863	74.7	6.6e-22	N/A	unknown function
eggNOG-mapper	UHGV-0033407_7	693746.OBV_18260	99.4	3.02e-26	N/A	N/A
PHROG	UHGV-0033407_13	phrog_1067	287.2	0	minor head protein	head and packaging
UniRef90	UHGV-0033407_13	UniRef90_A0A3D2HSL2	308.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0033407_13	1160721.RBI_I01574	298.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0033407_13	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0033407_13	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0033407_13	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0033407_13	PF14594,PF13884,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0033407_14	phrog_33	65.2	1.7e-18	distal tail protein Dit	tail
UniRef90	UHGV-0033407_14	UniRef90_UPI00164BA811	109.0	1.89e-25	phage tail family protein	N/A
eggNOG-mapper	UHGV-0033407_14	1160721.RBI_I01575	116.0	7.46e-29	Phage tail protein	N/A
NCBIFam	UHGV-0033407_14	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0033407_14	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0033407_14	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0033407_15	phrog_6900	260.4	0	tail length tape measure protein	tail
UniRef90	UHGV-0033407_15	UniRef90_A0A373CK98	308.0	0	PblA (Fragment)	N/A
eggNOG-mapper	UHGV-0033407_15	573061.Clocel_3967	317.0	0	tape measure	N/A
COG	UHGV-0033407_15	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0033407_15	PF05537,MF_04138,COG5281	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0033407_16	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0033407_17	phrog_88	79.8	3.2e-23	major tail protein	tail
UniRef90	UHGV-0033407_17	UniRef90_A5ZPL3	104.0	1.58e-24	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0033407_17	411459.RUMOBE_00930	104.0	2.65e-25	N/A	N/A
NCBIFam	UHGV-0033407_17	TIGR01603.1	N/A	N/A	major tail protein	N/A
eggNOG-mapper	UHGV-0033407_18	203119.Cthe_1624	48.9	0.00000857	N/A	N/A
structural_annotation	UHGV-0033407_18	PF05657,NF040576,COG3167	N/A	N/A	N/A	N/A
UniRef90	UHGV-0033407_19	UniRef90_A0A174CK72	90.1	2.75e-20	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0033407_19	97139.C824_05967	82.4	3.57e-18	Phage protein, HK97 gp10 family	N/A
structural_annotation	UHGV-0033407_19	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0033407_20	phrog_1951	66.1	4.3e-19	head-tail adaptor	connector
eggNOG-mapper	UHGV-0033407_20	1094508.Tsac_2422	49.3	0.00000446	Phage head-tail joining protein	N/A
COG	UHGV-0033407_20	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0033407_20	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0033407_21	phrog_5223	63.2	3.1e-18	neck protein	connector
eggNOG-mapper	UHGV-0033407_21	561177.ANHYDRO_01411	61.6	0.0000000000431	N/A	N/A
structural_annotation	UHGV-0033407_21	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0033407_22	phrog_10	63.3	2.8e-18	major head protein	head and packaging
UniRef90	UHGV-0033407_22	UniRef90_A0A1C5W5F9	349.0	0	Phage major capsid protein, HK97 family	N/A
eggNOG-mapper	UHGV-0033407_22	742740.HMPREF9474_04304	382.0	0	Phage capsid family	N/A
Pfam	UHGV-0033407_22	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0033407_22	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-0033407_22	PF05065,PF09032,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0033407_23	K06904	82.8	5.4e-24	N/A	N/A
PHROG	UHGV-0033407_23	phrog_80	96.1	5.2e-28	head maturation protease	head and packaging
UniRef90	UHGV-0033407_23	UniRef90_A0A2V2GKJ3	254.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0033407_23	1321814.HMPREF9089_00929	194.0	0	Caudovirus prohead serine protease	N/A
Pfam	UHGV-0033407_23	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
COG	UHGV-0033407_23	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0033407_23	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0033407_24	phrog_12	111.2	7.6e-33	portal protein	head and packaging
UniRef90	UHGV-0033407_24	UniRef90_A0A2V2GK98	480.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-0033407_24	742740.HMPREF9474_04306	365.0	0	Phage portal protein	N/A
Pfam	UHGV-0033407_24	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0033407_24	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0033407_24	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0033407_25	phrog_9	339.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-0033407_25	UniRef90_C9LCN6	811.0	0	Putative phage terminase, large subunit	N/A
eggNOG-mapper	UHGV-0033407_25	411470.RUMGNA_02062	811.0	0	N/A	N/A
Pfam	UHGV-0033407_25	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0033407_25	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0033407_25	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0033407_25	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0033407_26	phrog_1066	104.7	5.8e-31	N/A	unknown function
eggNOG-mapper	UHGV-0033407_26	397290.C810_00417	139.0	3.58999e-41	N/A	N/A
structural_annotation	UHGV-0033407_26	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
UniRef90	UHGV-0033407_27	UniRef90_A0A350U006	93.2	1.42e-22	HNH domain-containing protein	N/A
eggNOG-mapper	UHGV-0033407_27	1203606.HMPREF1526_00983	112.0	6.77e-31	HNH endonuclease	N/A
COG	UHGV-0033407_27	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0033407_28	PF09055	N/A	N/A	N/A	N/A
PHROG	UHGV-0033407_29	phrog_11237	62.3	8.5e-18	N/A	unknown function
eggNOG-mapper	UHGV-0033407_29	1235798.C817_02584	54.7	0.000000136	N/A	N/A
PHROG	UHGV-0033407_30	phrog_824	122.3	2.3e-36	N/A	unknown function
UniRef90	UHGV-0033407_30	UniRef90_R6DT92	266.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0033407_30	1414720.CBYM010000002_gene588	121.0	9.22e-34	VRR-NUC domain	N/A
Pfam	UHGV-0033407_30	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-0033407_30	PF08774	N/A	N/A	N/A	N/A
PHROG	UHGV-0033407_31	phrog_3584	165.4	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0033407_31	561177.ANHYDRO_01389	110.0	7.01e-26	N/A	N/A
structural_annotation	UHGV-0033407_31	PF21578,NF033538	N/A	N/A	N/A	N/A
PHROG	UHGV-0033407_32	phrog_478	114.8	4.2e-34	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0033407_32	UniRef90_R6E548	253.0	0	Prophage pi1 protein 29	N/A
eggNOG-mapper	UHGV-0033407_32	1111121.HMPREF1247_0834	107.0	2.75e-28	N/A	N/A
PHROG	UHGV-0033407_33	phrog_24368	52.8	0.0000000000000073	N/A	unknown function
PHROG	UHGV-0033407_34	phrog_355	69.3	4.6e-20	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0033407_34	UniRef90_A0A2V2FSM6	112.0	2.63e-29	Nucleoside 2-deoxyribosyltransferase	N/A
eggNOG-mapper	UHGV-0033407_34	573061.Clocel_3558	77.0	2.24e-16	N/A	N/A
Pfam	UHGV-0033407_34	PF14359	N/A	N/A	N/A	DUF4406
COG	UHGV-0033407_34	COG3613	N/A	N/A	Nucleoside 2-deoxyribosyltransferase	N/A
structural_annotation	UHGV-0033407_34	PF14359,MF_03036,NF007783,COG3613	N/A	N/A	N/A	N/A
KOfam	UHGV-0033407_35	K00571	98.6	6.5e-29	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0033407_35	phrog_16	231.2	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0033407_35	UniRef90_R6E553	1647.0	0	DNA methylase family protein	N/A
eggNOG-mapper	UHGV-0033407_35	1123489.AUAN01000010_gene370	1191.0	0	DEAD-like helicases superfamily	N/A
PADLOC	UHGV-0033407_35	MTase_II_00085	43.7	2.1e-16	Type II methyltransferase	RM
Pfam	UHGV-0033407_35	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-0033407_35	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0033407_35	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-0033407_35	PF01555,PF16203,PF04851,MF_01821,MF_00472,NF041790,NF008572,COG0553,COG0863	N/A	N/A	N/A	N/A
KOfam	UHGV-0033407_42	K03497	148.7	6.30584e-44	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0033407_42	phrog_6218	222.1	0	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0033407_42	UniRef90_R6DVU6	808.0	0	ParB-like partition protein	N/A
eggNOG-mapper	UHGV-0033407_42	394503.Ccel_3306	216.0	0	Belongs to the ParB family	N/A
Pfam	UHGV-0033407_42	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
NCBIFam	UHGV-0033407_42	TIGR00180.1	N/A	N/A	ParB/RepB/Spo0J family partition protein	N/A
COG	UHGV-0033407_42	COG0710	N/A	N/A	3-dehydroquinate dehydratase	N/A
structural_annotation	UHGV-0033407_42	PF02195,PF18579,MF_02015,TIGR00180,COG1475	N/A	N/A	N/A	N/A
UniRef90	UHGV-0033407_43	UniRef90_A0A3D1LDL3	63.2	0.0000000000358	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0033407_43	1235797.C816_00778	57.8	0.000000000714	TIGRFAM DNA binding domain, excisionase family	N/A
UniRef90	UHGV-0033407_44	UniRef90_A0A6I1BEP5	71.2	0.00000000000000636	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0033407_44	1033744.CAEL01000029_gene1308	65.1	0.000000000000292	N/A	N/A
Pfam	UHGV-0033407_44	PF05339	N/A	N/A	N/A	DUF739
structural_annotation	UHGV-0033407_44	PF05339,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0033407_45	K22300	48.2	0.00000000000022	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0033407_45	phrog_8	58.1	1.6e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0033407_45	UniRef90_R6DTB4	151.0	3.64338e-44	Peptidase S24-like protein	N/A
eggNOG-mapper	UHGV-0033407_45	1121335.Clst_0369	85.9	8.98e-20	helix-turn-helix	N/A
Pfam	UHGV-0033407_45	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0033407_45	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0033407_45	PF12844,MF_02017,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0033407_46	phrog_1914	112.2	1.8e-33	N/A	unknown function
UniRef90	UHGV-0033407_46	UniRef90_R6DVV5	347.0	0	Predicted Zn peptidase	N/A
eggNOG-mapper	UHGV-0033407_46	1160721.RBI_I01604	144.0	2.67998e-41	N/A	N/A
Pfam	UHGV-0033407_46	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0033407_46	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0033407_46	PF06114,COG2856	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0033407_47	1280696.ATVY01000006_gene906	75.1	0.0000000000000423	DNA/RNA non-specific endonuclease	N/A
COG	UHGV-0033407_47	COG2169	N/A	N/A	Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains	N/A
eggNOG-mapper	UHGV-0033407_48	1262449.CP6013_2082	145.0	1.3999e-42	N/A	N/A
structural_annotation	UHGV-0033407_48	PF11631,TIGR03066	N/A	N/A	N/A	N/A
KOfam	UHGV-0033407_49	K14059	266.0	0	int; integrase	N/A
PHROG	UHGV-0033407_49	phrog_1	201.0	0	integrase	integration and excision
UniRef90	UHGV-0033407_49	UniRef90_A0A413G0Q9	343.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0033407_49	641112.ACOK01000036_gene788	320.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0033407_49	PF13102	N/A	N/A	Phage integrase SAM-like domain	Phage_int_SAM_5
Pfam	UHGV-0033407_49	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0033407_49	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0033407_49	PF00589,PF13102,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0033407_50	K18843	54.3	0.000000000000003	hicB; antitoxin HicB	N/A
PHROG	UHGV-0033407_50	phrog_497	74.1	2.4e-21	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0033407_50	UniRef90_R6GVF3	193.0	0	HicB-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0033407_50	397290.C810_01569	156.0	0	HicB_like antitoxin of bacterial toxin-antitoxin system	N/A
Pfam	UHGV-0033407_50	PF15919	N/A	N/A	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
COG	UHGV-0033407_50	COG1598	N/A	N/A	Antitoxin component HicB of the HicAB toxin-antitoxin system	N/A
structural_annotation	UHGV-0033407_50	PF15919,COG1598	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0033407	Yes	40,019	43	100	1