vOTU vOTU-080102

vOTU: vOTU-080102

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-080102
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00751 → vGENUS-00991 → vSUBGEN-16960 → vOTU-080102
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0014121
Biosample ID	SAMEA4765620
Genome length (bp)	39,195 bps
CheckV completeness	99.90% (High-quality)
CDS count	55
CDS density	93.84%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus	Total connections	20	Host agreement	80
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus → Limivicinus sp003150355	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0014121_1	1410650.JHWL01000003_gene2815	90.5	5.26e-18	N/A	N/A
PHROG	UHGV-0014121_2	phrog_22978	588.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0014121_2	1410650.JHWL01000003_gene2814	367.0	0	N/A	N/A
Pfam	UHGV-0014121_2	PF18760	N/A	N/A	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
PHROG	UHGV-0014121_3	phrog_13908	177.6	0	N/A	unknown function
eggNOG-mapper	UHGV-0014121_3	748224.HMPREF9436_01398	58.9	0.000000867	Cysteine protease Prp	N/A
COG	UHGV-0014121_3	COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0014121_4	phrog_1357	220.6	0	major head protein	head and packaging
UniRef90	UHGV-0014121_4	UniRef90_A0A3C0NPN1	560.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0014121_4	1410650.JHWL01000003_gene2830	261.0	0	N/A	N/A
NCBIFam	UHGV-0014121_4	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0014121_4	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0014121_6	phrog_12105	100.4	1.3e-29	N/A	unknown function
eggNOG-mapper	UHGV-0014121_6	1519439.JPJG01000060_gene1891	68.9	0.000000000000287	N/A	N/A
PHROG	UHGV-0014121_7	phrog_511	228.6	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0014121_7	1410650.JHWL01000003_gene2827	344.0	0	N/A	N/A
structural_annotation	UHGV-0014121_7	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0014121_9	phrog_25979	43.5	0.00000000000042	N/A	unknown function
eggNOG-mapper	UHGV-0014121_9	1519439.JPJG01000060_gene1892	96.7	1.31e-18	Collagen triple helix repeat (20 copies)	N/A
COG	UHGV-0014121_9	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
structural_annotation	UHGV-0014121_9	PF07353,COG3979	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0014121_10	PF21253,PF07210,NF038128,TIGR03000,COG2512	N/A	N/A	N/A	N/A
PHROG	UHGV-0014121_14	phrog_27545	87.4	1.7e-25	N/A	unknown function
eggNOG-mapper	UHGV-0014121_14	1122971.BAME01000151_gene6566	103.0	1.11e-25	N/A	N/A
PHROG	UHGV-0014121_16	phrog_355	62.8	4.9e-18	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0014121_16	UniRef90_A0A3A9J0H5	173.0	0	N/A	N/A
eggNOG-mapper	UHGV-0014121_16	97138.C820_00250	128.0	3.37e-37	N/A	N/A
Pfam	UHGV-0014121_16	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-0014121_16	PF14359,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-0014121_17	phrog_14030	163.6	0	N/A	unknown function
UniRef90	UHGV-0014121_17	UniRef90_A0A316NTC6	218.0	0	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0014121_17	641107.CDLVIII_3774	195.0	0	Bacteriophage peptidoglycan hydrolase	N/A
Pfam	UHGV-0014121_17	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
Pfam	UHGV-0014121_17	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0014121_17	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0014121_17	PF01471,PF05382,NF038080,NF033742,COG3409,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-0014121_18	phrog_199	66.6	2.8e-19	holin	lysis
UniRef90	UHGV-0014121_18	UniRef90_A0A3C0NPD5	184.0	0	Holin	N/A
eggNOG-mapper	UHGV-0014121_18	742738.HMPREF9460_00365	149.0	5.60519e-44	Bacteriophage holin family	N/A
Pfam	UHGV-0014121_18	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0014121_18	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0014121_18	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0014121_18	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0014121_19	PF16509,MF_00674,NF008895,COG2739	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0014121_22	1408437.JNJN01000043_gene801	68.2	0.00000000000696	N/A	N/A
KOfam	UHGV-0014121_23	K14059	128.4	8.2e-38	int; integrase	N/A
PHROG	UHGV-0014121_23	phrog_1	138.2	6.70003e-41	integrase	integration and excision
UniRef90	UHGV-0014121_23	UniRef90_A0A2Z4QB94	295.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0014121_23	1514668.JOOA01000001_gene242	133.0	4.89e-33	Phage integrase family	N/A
Pfam	UHGV-0014121_23	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0014121_23	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0014121_23	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0014121_25	UniRef90_A0A810Q5N3	126.0	5.72e-35	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0014121_25	748224.HMPREF9436_01444	91.3	1.2e-21	N/A	N/A
Pfam	UHGV-0014121_25	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0014121_25	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0014121_25	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0014121_28	UniRef90_A0A2N2CNE6	76.6	4.83e-16	N/A	N/A
eggNOG-mapper	UHGV-0014121_28	742738.HMPREF9460_02806	79.7	1.45e-16	N/A	N/A
PHROG	UHGV-0014121_38	phrog_824	152.4	1.4013e-45	N/A	unknown function
UniRef90	UHGV-0014121_38	UniRef90_A0A6N8GXS9	174.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0014121_38	665956.HMPREF1032_00132	154.0	0	VRR_NUC	N/A
Pfam	UHGV-0014121_38	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
PHROG	UHGV-0014121_39	phrog_24518	72.8	4.4e-21	N/A	unknown function
eggNOG-mapper	UHGV-0014121_39	693746.OBV_25370	96.7	2.83e-22	N/A	N/A
KOfam	UHGV-0014121_40	K00390	101.0	1.3e-29	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0014121_40	phrog_424	124.5	7.3e-37	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0014121_40	UniRef90_UPI00164AFBC1	358.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-0014121_40	1408437.JNJN01000032_gene2312	333.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-0014121_40	BrxP_00001	64.3	1.1e-19	BrxP	BREX
Pfam	UHGV-0014121_40	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0014121_40	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0014121_40	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-0014121_41	phrog_799	51.6	0.00000000000001	DNA methyltransferase	other
UniRef90	UHGV-0014121_41	UniRef90_A0A4U8T4F4	95.9	1.21e-21	Sugar-phosphate nucleotidyltransferase	N/A
eggNOG-mapper	UHGV-0014121_41	537971.HCCG_00428	90.9	1.04e-20	N/A	N/A
structural_annotation	UHGV-0014121_41	PF05869,MF_00607,NF000468,COG0030	N/A	N/A	N/A	N/A
PHROG	UHGV-0014121_48	phrog_3584	162.9	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0014121_48	1226322.HMPREF1545_03841	249.0	0	N/A	N/A
structural_annotation	UHGV-0014121_48	PF01446,NF041486	N/A	N/A	N/A	N/A
UniRef90	UHGV-0014121_51	UniRef90_A0A3C0NNN3	63.2	0.0000000029	HTH psq-type domain-containing protein	N/A
KOfam	UHGV-0014121_52	K06909	142.3	3.69943e-42	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0014121_52	phrog_979	144.0	3.22299e-44	terminase large subunit	head and packaging
UniRef90	UHGV-0014121_52	UniRef90_A0A3C0NMI6	686.0	0	Terminase-like family protein	N/A
eggNOG-mapper	UHGV-0014121_52	1410650.JHWL01000003_gene2834	584.0	0	N/A	N/A
Pfam	UHGV-0014121_52	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0014121_52	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0014121_52	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0014121_53	phrog_156	275.7	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0014121_53	1410650.JHWL01000003_gene2833	491.0	0	N/A	N/A
structural_annotation	UHGV-0014121_53	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0014121_54	K07584	57.1	3.7e-16	N/A	N/A
PHROG	UHGV-0014121_54	phrog_4478	52.2	0.0000000000000082	peptidase	other
UniRef90	UHGV-0014121_54	UniRef90_A0A2N6APL4	50.4	0.00000946	Ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-0014121_54	1114972.AUAW01000001_gene1462	48.5	0.00000794	Cysteine protease Prp	N/A
Pfam	UHGV-0014121_54	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0014121_54	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0014121_54	PF04327,NF011133,COG2868	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0014121	Yes	39,195	56	100	1