vOTU vOTU-080326

vOTU: vOTU-080326

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-080326
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00001 → vSUBFAM-01250 → vGENUS-03215 → vSUBGEN-01661 → vOTU-080326
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger qucibialis
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0022445
Biosample ID	N/A
Genome length (bp)	46,091 bps
CheckV completeness	99.90% (High-quality)
CDS count	63
CDS density	92.58%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger qucibialis	Total connections	184	Host agreement	98.91
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger qucibialis	Total connections	80	Host agreement	95

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0022445_3	phrog_13589	185.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0022445_3	428125.CLOLEP_01434	241.0	0	N/A	N/A
PHROG	UHGV-0022445_4	phrog_31538	40.8	0.000000000042	N/A	unknown function
eggNOG-mapper	UHGV-0022445_4	428125.CLOLEP_01433	55.8	0.00000000606	N/A	N/A
structural_annotation	UHGV-0022445_5	PF12245	N/A	N/A	N/A	N/A
PHROG	UHGV-0022445_7	phrog_18444	80.6	1.1e-23	N/A	unknown function
UniRef90	UHGV-0022445_7	UniRef90_UPI00156E9A45	59.7	0.000000000177	peptide chain release factor 2	N/A
eggNOG-mapper	UHGV-0022445_7	1294142.CINTURNW_1707	60.8	0.0000000000104	N/A	N/A
PHROG	UHGV-0022445_8	phrog_18190	109.4	3.2e-32	N/A	unknown function
eggNOG-mapper	UHGV-0022445_8	411471.SUBVAR_06932	301.0	0	N/A	N/A
structural_annotation	UHGV-0022445_8	PF05954,PF00629,PF03424,NF033848,NF033675,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0022445_9	phrog_1194	54.3	0.0000000000000023	N/A	unknown function
eggNOG-mapper	UHGV-0022445_9	411471.SUBVAR_06933	199.0	0	N/A	N/A
structural_annotation	UHGV-0022445_9	PF20458,TIGR02126,COG4718	N/A	N/A	N/A	N/A
PHROG	UHGV-0022445_10	phrog_1535	199.9	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0022445_10	665956.HMPREF1032_03057	168.0	4.98e-40	tape measure	N/A
COG	UHGV-0022445_10	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-0022445_11	phrog_706	102.0	6e-30	N/A	unknown function
UniRef90	UHGV-0022445_11	UniRef90_UPI0013141117	226.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0022445_11	665956.HMPREF1032_03058	207.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0022445_11	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0022445_11	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0022445_12	phrog_11299	99.9	2.3e-29	N/A	unknown function
eggNOG-mapper	UHGV-0022445_12	665956.HMPREF1032_03059	112.0	6.84e-30	N/A	N/A
structural_annotation	UHGV-0022445_12	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0022445_13	phrog_3099	152.6	1.4013e-45	N/A	unknown function
eggNOG-mapper	UHGV-0022445_13	411471.SUBVAR_06936	259.0	0	N/A	N/A
structural_annotation	UHGV-0022445_13	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0022445_14	phrog_3266	77.9	1.1e-22	tail completion	connector
eggNOG-mapper	UHGV-0022445_14	663278.Ethha_0492	60.1	0.00000000149	N/A	N/A
structural_annotation	UHGV-0022445_14	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0022445_15	phrog_556	86.7	2.2e-25	minor head protein	head and packaging
UniRef90	UHGV-0022445_15	UniRef90_UPI001958E7C1	99.4	3.42e-24	minor capsid protein	N/A
eggNOG-mapper	UHGV-0022445_15	883114.HMPREF9709_01190	70.1	0.0000000000000855	Minor capsid protein	N/A
Pfam	UHGV-0022445_15	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0022445_15	PF11114	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0022445_16	PF20536,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0022445_18	phrog_247	196.8	0	major head protein	head and packaging
UniRef90	UHGV-0022445_18	UniRef90_A0A3N0ATH1	156.0	3.72998e-41	Coat protein	N/A
eggNOG-mapper	UHGV-0022445_18	768710.DesyoDRAFT_1109	130.0	1.4e-32	N/A	N/A
structural_annotation	UHGV-0022445_18	PF20036,MF_04113,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0022445_19	phrog_194	45.5	0.0000000000013	head scaffolding protein	head and packaging
structural_annotation	UHGV-0022445_19	PF06810,MF_02110	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0022445_20	1160721.RBI_I00206	50.1	0.000000196	N/A	N/A
structural_annotation	UHGV-0022445_20	PF10723	N/A	N/A	N/A	N/A
PHROG	UHGV-0022445_21	phrog_2443	215.5	0	amidoligase enzyme	other
UniRef90	UHGV-0022445_21	UniRef90_R6RDL0	279.0	0	Putative amidoligase enzyme	N/A
eggNOG-mapper	UHGV-0022445_21	457415.HMPREF1006_00457	278.0	0	N/A	N/A
AcrCatalog	UHGV-0022445_21	cluster_58247	77.4	5.89e-18	NA	N/A
Pfam	UHGV-0022445_21	PF12224	N/A	N/A	Putative amidoligase enzyme	Amidoligase_2
structural_annotation	UHGV-0022445_21	PF12224,MF_01609,NF010045,COG2170	N/A	N/A	N/A	N/A
KOfam	UHGV-0022445_25	K00682	53.5	0.0000000000000036	GGCT; gamma-glutamylcyclotransferase [EC:4.3.2.9]	N/A
PHROG	UHGV-0022445_25	phrog_2520	99.5	2.7e-29	gamma-glutamyl cyclotransferase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0022445_25	UniRef90_A0A367GJL1	169.0	0	Gamma-glutamylcyclotransferase	N/A
eggNOG-mapper	UHGV-0022445_25	411473.RUMCAL_03421	140.0	1.23e-40	AIG2-like family	N/A
Pfam	UHGV-0022445_25	PF06094	N/A	N/A	Gamma-glutamyl cyclotransferase, AIG2-like	GGACT
COG	UHGV-0022445_25	COG2105	N/A	N/A	Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family	N/A
structural_annotation	UHGV-0022445_25	PF06094,COG2105	N/A	N/A	N/A	N/A
COG	UHGV-0022445_26	COG3058	N/A	N/A	Formate dehydrogenase maturation protein FdhE	N/A
PHROG	UHGV-0022445_27	phrog_581	283.0	0	minor head protein	head and packaging
UniRef90	UHGV-0022445_27	UniRef90_UPI00164A36DC	260.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0022445_27	936375.HMPREF1152_1071	235.0	0	N/A	N/A
Pfam	UHGV-0022445_27	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0022445_27	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0022445_27	PF06152,PF21814	N/A	N/A	N/A	N/A
PHROG	UHGV-0022445_28	phrog_533	264.1	0	portal protein	head and packaging
UniRef90	UHGV-0022445_28	UniRef90_A0A3E2XD02	618.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0022445_28	1449050.JNLE01000003_gene3894	250.0	0	N/A	N/A
Pfam	UHGV-0022445_28	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0022445_28	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0022445_29	K06909	305.8	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0022445_29	phrog_3717	125.9	2.5e-37	terminase large subunit	head and packaging
UniRef90	UHGV-0022445_29	UniRef90_A0A367GIK4	909.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0022445_29	665956.HMPREF1032_02957	402.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0022445_29	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0022445_29	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
COG	UHGV-0022445_29	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0022445_29	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0022445_30	K00571	127.1	1.8e-37	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0022445_30	phrog_498	436.1	0	DNA methyltransferase	other
UniRef90	UHGV-0022445_30	UniRef90_A0A367GIB5	861.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0022445_30	1423758.BN55_01455	418.0	0	DNA methylase	N/A
PADLOC	UHGV-0022445_30	MTase_II_00015	263.6	0	Type II methyltransferase	RM
Pfam	UHGV-0022445_30	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-0022445_30	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0022445_30	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0022445_30	PF01555,PF02195,MF_02015,MF_01872,NF010253,TIGR04285,COG0863,COG1475	N/A	N/A	N/A	N/A
KOfam	UHGV-0022445_33	K23518	206.0	0	MACROD, ymdB; O-acetyl-ADP-ribose deacetylase [EC:3.1.1.106]	N/A
UniRef90	UHGV-0022445_33	UniRef90_A0A367GJM1	318.0	0	RNase III inhibitor	N/A
eggNOG-mapper	UHGV-0022445_33	383372.Rcas_0425	160.0	0	PFAM Appr-1-p processing domain protein	N/A
Pfam	UHGV-0022445_33	PF01661	N/A	N/A	Macro domain	Macro
COG	UHGV-0022445_33	COG2110	N/A	N/A	O-acetyl-ADP-ribose deacetylase (regulator of RNase III), contains Macro domain	N/A
structural_annotation	UHGV-0022445_33	PF01661,MF_01205,NF001663,COG2110	N/A	N/A	N/A	N/A
PHROG	UHGV-0022445_34	phrog_8680	194.8	0	N/A	unknown function
UniRef90	UHGV-0022445_34	UniRef90_A0A6L5T7C3	157.0	9.80909e-45	N/A	N/A
eggNOG-mapper	UHGV-0022445_34	1229517.AMFD01000023_gene1324	154.0	5.88545e-44	N/A	N/A
Pfam	UHGV-0022445_34	PF14386	N/A	N/A	N/A	DUF4417
structural_annotation	UHGV-0022445_34	PF14386,NF041059	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0022445_35	PF07374,TIGR01637	N/A	N/A	N/A	N/A
KOfam	UHGV-0022445_37	K14440	119.2	1.4e-35	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	N/A
PHROG	UHGV-0022445_37	phrog_62	368.3	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0022445_37	UniRef90_A0A367GJS6	925.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-0022445_37	1203606.HMPREF1526_00244	479.0	0	snf2 family	N/A
PADLOC	UHGV-0022445_37	ZorD1_00007	105.6	5.6e-31	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
Pfam	UHGV-0022445_37	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-0022445_37	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0022445_37	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-0022445_37	PF13872,PF16203,MF_01821,NF041790,COG0553	N/A	N/A	N/A	N/A
PHROG	UHGV-0022445_38	phrog_93	49.6	0.000000000000055	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0022445_38	UniRef90_UPI0018F1F23F	224.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0022445_38	86416.Clopa_0565	82.8	2.57e-19	VRR-NUC domain-containing protein	N/A
structural_annotation	UHGV-0022445_38	PF08774,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
PHROG	UHGV-0022445_39	phrog_256	958.5	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0022445_39	UniRef90_A0A367GI49	1648.0	0	Virulence-associated protein E	N/A
eggNOG-mapper	UHGV-0022445_39	1120971.AUCA01000043_gene1172	729.0	0	Virulence-associated protein E	N/A
Pfam	UHGV-0022445_39	PF05272	N/A	N/A	Virulence-associated protein E-like domain	VapE-like_dom
COG	UHGV-0022445_39	COG5545	N/A	N/A	Predicted P-loop ATPase and inactivated derivatives	N/A
structural_annotation	UHGV-0022445_39	PF05272,MF_04000,NF005477,NF040562,COG5545	N/A	N/A	N/A	N/A
PHROG	UHGV-0022445_41	phrog_2245	51.7	0.000000000000016	nucleoside triphosphate pyrophosphohydrolase	other
structural_annotation	UHGV-0022445_41	PF02888,COG1694	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0022445_43	760568.Desku_0919	88.6	4.67e-19	N/A	N/A
structural_annotation	UHGV-0022445_43	PF03787,TIGR02581,COG1604	N/A	N/A	N/A	N/A
KOfam	UHGV-0022445_44	K02334	783.3	0	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	N/A
PHROG	UHGV-0022445_44	phrog_17	364.2	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0022445_44	UniRef90_A0A367GJN4	1305.0	0	POLAc domain-containing protein	N/A
eggNOG-mapper	UHGV-0022445_44	693746.OBV_43170	669.0	0	DNA polymerase	N/A
Pfam	UHGV-0022445_44	PF00476	N/A	N/A	DNA polymerase family A	DNA_pol_A
COG	UHGV-0022445_44	COG0749	N/A	N/A	DNA polymerase I, 3'-5' exonuclease and polymerase domains	N/A
structural_annotation	UHGV-0022445_44	PF00476,MF_04101,NF011540,COG0749	N/A	N/A	N/A	N/A
PHROG	UHGV-0022445_45	phrog_112	157.5	0	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0022445_45	UniRef90_A0A367GK15	350.0	0	N/A	N/A
eggNOG-mapper	UHGV-0022445_45	397288.C806_00737	142.0	2.42e-40	N/A	N/A
Pfam	UHGV-0022445_45	PF10991	N/A	N/A	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
structural_annotation	UHGV-0022445_45	PF10991,MF_04153	N/A	N/A	N/A	N/A
PHROG	UHGV-0022445_46	phrog_69	310.9	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0022445_46	UniRef90_A0A367GI90	730.0	0	N/A	N/A
eggNOG-mapper	UHGV-0022445_46	1408437.JNJN01000081_gene1518	313.0	0	N/A	N/A
Pfam	UHGV-0022445_46	PF10926	N/A	N/A	N/A	DUF2800
COG	UHGV-0022445_46	COG2887	N/A	N/A	RecB family exonuclease	N/A
structural_annotation	UHGV-0022445_46	PF10926,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0022445_49	PF01157,MF_01354,NF002745,COG2139	N/A	N/A	N/A	N/A
PHROG	UHGV-0022445_50	phrog_18562	42.6	0.000000000014	N/A	unknown function
UniRef90	UHGV-0022445_54	UniRef90_A0A367GID4	120.0	1.18e-34	HTH_17 domain-containing protein	N/A
Pfam	UHGV-0022445_54	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-0022445_54	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
PHROG	UHGV-0022445_55	phrog_8	40.0	0.000000000082	transcriptional regulator	transcription regulation
UniRef90	UHGV-0022445_55	UniRef90_A0A124JZL2	55.8	0.000000163	HTH cro/C1-type domain-containing protein	N/A
COG	UHGV-0022445_55	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0022445_55	PF01381,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0022445_57	K14059	194.8	0	int; integrase	N/A
PHROG	UHGV-0022445_57	phrog_1	195.3	0	integrase	integration and excision
UniRef90	UHGV-0022445_57	UniRef90_A0A367GI93	726.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0022445_57	1507.HMPREF0262_00307	189.0	0	Phage integrase family	N/A
Pfam	UHGV-0022445_57	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0022445_57	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0022445_57	PF00589,PF14659,PF14657,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0022445_58	phrog_1129	61.7	9.4e-18	holin	lysis
UniRef90	UHGV-0022445_58	UniRef90_A0A367FT42	164.0	0	Enolase	N/A
eggNOG-mapper	UHGV-0022445_58	1007096.BAGW01000036_gene2663	112.0	2.52e-31	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0022445_58	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0022445_58	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0022445_59	phrog_1863	78.1	5.8e-23	N/A	unknown function
eggNOG-mapper	UHGV-0022445_59	693746.OBV_18260	110.0	9.1e-31	N/A	N/A
KOfam	UHGV-0022445_60	K07273	171.9	0	acm; lysozyme	N/A
PHROG	UHGV-0022445_60	phrog_291	146.4	2.00386e-43	endolysin	lysis
UniRef90	UHGV-0022445_60	UniRef90_A0A367G061	517.0	0	Peptidase_M23 domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-0022445_60	411471.SUBVAR_06927	317.0	0	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0022445_60	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
Pfam	UHGV-0022445_60	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0022445_60	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0022445_60	PF01551,PF01183,NF040883,COG0739,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0022445_61	phrog_24267	58.2	1.8e-16	N/A	unknown function
eggNOG-mapper	UHGV-0022445_61	508419.F8J176_9CAUD	115.0	1.28e-25	peptidoglycan catabolic process	N/A
Pfam	UHGV-0022445_61	PF11133	N/A	N/A	Head fiber protein	Phage_head_fibr
Pfam	UHGV-0022445_61	PF03406	N/A	N/A	Phage tail fibre repeat	Phage_fiber_2
PHROG	UHGV-0022445_62	phrog_19111	50.0	5.3e-26	N/A	unknown function
eggNOG-mapper	UHGV-0022445_62	756499.Desde_3162	109.0	3.55e-24	nuclear chromosome segregation	N/A
COG	UHGV-0022445_62	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
eggNOG-mapper	UHGV-0022445_63	537007.BLAHAN_05238	67.0	0.000000000572	translation initiation factor activity	N/A
COG	UHGV-0022445_63	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0022445	Yes	46,091	57	100	1