vOTU vOTU-081076

vOTU: vOTU-081076

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-081076
Number of genomes	4
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00022 → vSUBFAM-07428 → vGENUS-20582 → vSUBGEN-40621 → vOTU-081076
Host lineage	Bacteria → Firmicutes → Bacilli → Staphylococcales → Staphylococcaceae → Staphylococcus → Staphylococcus epidermidis
Host range breadth	Species
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0197789
Biosample ID	N/A
Genome length (bp)	30,298 bps
CheckV completeness	99.90% (High-quality)
CDS count	39
CDS density	92.36%
tRNA count	1
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → Staphylococcales → Staphylococcaceae → Staphylococcus → Staphylococcus epidermidis	Total connections	1	Host agreement	100
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0197789_1	K07451	46.0	0.00000000000091	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0197789_1	phrog_144	68.1	1.4e-19	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0197789_1	UniRef90_UPI00041EBC88	132.0	3.76e-38	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0197789_1	1123263.AUKY01000046_gene464	132.0	6.3e-39	HNH endonuclease	N/A
Pfam	UHGV-0197789_1	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0197789_1	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0197789_3	PF04545,MF_00674,TIGR01636,COG1191	N/A	N/A	N/A	N/A
PHROG	UHGV-0197789_4	phrog_298	74.8	3.5e-22	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0197789_4	UniRef90_A0A2K9V3J9	58.5	0.000000493	Exonuclease	N/A
eggNOG-mapper	UHGV-0197789_4	1122981.AUME01000026_gene554	73.2	0.00000000000149	YqaJ viral recombinase family	N/A
Pfam	UHGV-0197789_4	PF12705	N/A	N/A	PD-(D/E)XK nuclease superfamily	PDDEXK_1
COG	UHGV-0197789_4	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0197789_4	PF12705,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
PHROG	UHGV-0197789_5	phrog_6244	45.4	0.0000000000019	N/A	unknown function
COG	UHGV-0197789_5	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
KOfam	UHGV-0197789_6	K01160	50.0	0.000000000000068	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0197789_6	phrog_140	73.0	4.8e-21	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0197789_6	UniRef90_A0A843HPS1	52.4	0.0000085	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0197789_6	1278311.AUAL01000001_gene43	76.3	8.09e-16	crossover junction endodeoxyribonuclease activity	N/A
Pfam	UHGV-0197789_6	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0197789_6	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0197789_6	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0197789_7	K07505	113.6	2.2e-33	repA; regulatory protein RepA	N/A
PHROG	UHGV-0197789_7	phrog_2597	382.8	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0197789_7	UniRef90_A0A242K8R7	260.0	0	AAA domain-containing protein	N/A
eggNOG-mapper	UHGV-0197789_7	1123263.AUKY01000015_gene1593	259.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-0197789_7	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
Pfam	UHGV-0197789_7	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-0197789_7	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-0197789_7	PF13481,PF16793,PF08220,MF_00350,MF_00700,NF006606,NF001641,COG3598,COG3285	N/A	N/A	N/A	N/A
PHROG	UHGV-0197789_8	phrog_2698	89.6	2.4e-26	N/A	unknown function
eggNOG-mapper	UHGV-0197789_8	883114.HMPREF9709_01213	72.4	0.000000000000236	N/A	N/A
PHROG	UHGV-0197789_10	phrog_124	145.8	2.60642e-43	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0197789_10	UniRef90_A0A3A6N7Y2	153.0	1.43997e-41	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0197789_10	910314.HMPREF9220_0634	147.0	4.13e-40	AAA domain	N/A
Pfam	UHGV-0197789_10	PF13479	N/A	N/A	AAA domain	AAA_24
KOfam	UHGV-0197789_12	K14059	129.0	5.3e-38	int; integrase	N/A
PHROG	UHGV-0197789_12	phrog_1	142.7	2.90069e-42	integrase	integration and excision
UniRef90	UHGV-0197789_12	UniRef90_A0A6N7S5Q9	193.0	0	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0197789_12	1488328.JMCL01000016_gene408	65.5	0.00000000979	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0197789_12	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0197789_12	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0197789_12	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0197789_14	phrog_4105	57.1	3.2e-16	N/A	unknown function
eggNOG-mapper	UHGV-0197789_14	33035.JPJF01000043_gene996	60.5	0.000000000261	N/A	N/A
Pfam	UHGV-0197789_15	PF13306	N/A	N/A	BspA type Leucine rich repeat region (6 copies)	LRR_5
Pfam	UHGV-0197789_19	PF13306	N/A	N/A	BspA type Leucine rich repeat region (6 copies)	LRR_5
PHROG	UHGV-0197789_20	phrog_13256	66.5	2.2e-19	N/A	unknown function
eggNOG-mapper	UHGV-0197789_20	1160721.RBI_II00522	59.7	0.0000000000652	N/A	N/A
eggNOG-mapper	UHGV-0197789_21	861454.HMPREF9099_00683	80.1	0.0000000000000307	SH3, type 3 domain protein	N/A
Pfam	UHGV-0197789_21	PF05257	N/A	N/A	CHAP domain	CHAP
COG	UHGV-0197789_21	COG3942	N/A	N/A	Surface antigen	N/A
structural_annotation	UHGV-0197789_21	PF08239,TIGR02594,COG3942,COG4991	N/A	N/A	N/A	N/A
PHROG	UHGV-0197789_23	phrog_1067	200.0	0	minor head protein	head and packaging
UniRef90	UHGV-0197789_23	UniRef90_UPI00189A8481	368.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0197789_23	1160721.RBI_I01574	184.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0197789_23	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0197789_23	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0197789_23	COG4926	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-0197789_24	phrog_33	79.0	8.9e-23	distal tail protein Dit	tail
eggNOG-mapper	UHGV-0197789_24	1160721.RBI_I01575	86.3	2.13e-17	Phage tail protein	N/A
Pfam	UHGV-0197789_24	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
COG	UHGV-0197789_24	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0197789_24	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0197789_25	phrog_1533	383.8	0	tail length tape measure protein	tail
UniRef90	UHGV-0197789_25	UniRef90_A0A425XBK8	269.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0197789_25	877414.ATWA01000019_gene2048	441.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0197789_25	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0197789_25	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0197789_25	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0197789_25	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0197789_26	phrog_709	71.2	8.2e-23	N/A	unknown function
UniRef90	UHGV-0197789_26	UniRef90_C2XXF5	60.5	0.0000000023	Prophage pi2 protein 40	N/A
eggNOG-mapper	UHGV-0197789_26	315730.BcerKBAB4_3583	62.4	0.0000000000691	N/A	N/A
structural_annotation	UHGV-0197789_26	PF19591	N/A	N/A	N/A	N/A
PHROG	UHGV-0197789_27	phrog_88	147.4	7.00649e-44	major tail protein	tail
UniRef90	UHGV-0197789_27	UniRef90_A0A7C6KQQ3	171.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0197789_27	1033744.CAEL01000029_gene1276	160.0	0	Phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0197789_27	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0197789_27	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0197789_28	phrog_78	55.7	9.7e-16	tail terminator	connector
eggNOG-mapper	UHGV-0197789_28	1384057.CD33_14165	59.3	0.000000000549	N/A	N/A
structural_annotation	UHGV-0197789_28	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
UniRef90	UHGV-0197789_29	UniRef90_A0A8E3N0V9	53.9	0.00000198	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0197789_29	471875.RUMLAC_02243	60.1	0.00000000127	N/A	N/A
structural_annotation	UHGV-0197789_29	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0197789_30	phrog_1951	67.9	1.2e-19	head-tail adaptor	connector
UniRef90	UHGV-0197789_30	UniRef90_UPI001959FB60	51.2	0.00000422	phage head closure protein	N/A
eggNOG-mapper	UHGV-0197789_30	1211814.CAPG01000074_gene3451	53.5	0.000000074	head-tail adaptor	N/A
COG	UHGV-0197789_30	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0197789_30	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
NCBIFam	UHGV-0197789_31	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
PHROG	UHGV-0197789_33	phrog_10	94.8	1.1e-27	major head protein	head and packaging
UniRef90	UHGV-0197789_33	UniRef90_A0A843HUX6	254.0	0	Phage major capsid protein	N/A
Pfam	UHGV-0197789_33	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0197789_33	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-0197789_33	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0197789_34	K06904	128.3	8.1e-38	N/A	N/A
PHROG	UHGV-0197789_34	phrog_80	151.5	7.00649e-45	head maturation protease	head and packaging
UniRef90	UHGV-0197789_34	UniRef90_UPI0004220697	191.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0197789_34	1123263.AUKY01000046_gene468	191.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-0197789_34	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0197789_34	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0197789_34	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0197789_34	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0197789_35	phrog_12	183.6	0	portal protein	head and packaging
UniRef90	UHGV-0197789_35	UniRef90_UPI000488BE8B	433.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0197789_35	1123263.AUKY01000046_gene467	433.0	0	Portal protein	N/A
Pfam	UHGV-0197789_35	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0197789_35	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0197789_35	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0197789_35	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0197789_36	phrog_9	400.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-0197789_36	UniRef90_UPI0004231217	628.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0197789_36	1123263.AUKY01000046_gene466	628.0	0	large subunit	N/A
Pfam	UHGV-0197789_36	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0197789_36	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0197789_36	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0197789_36	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0197789_37	phrog_13845	126.1	1e-37	N/A	unknown function
eggNOG-mapper	UHGV-0197789_37	1399942.U3PDR2_9CAUD	122.0	2.61e-34	N/A	N/A
Pfam	UHGV-0197789_37	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0197789_37	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0197789_38	phrog_56	45.2	4.6e-25	DNA methyltransferase	other
UniRef90	UHGV-0197789_38	UniRef90_UPI00164C574E	242.0	0	DNA adenine methylase	N/A
eggNOG-mapper	UHGV-0197789_38	1236504.HMPREF2132_01695	150.0	1.94e-39	D12 class N6 adenine-specific DNA methyltransferase	N/A
PADLOC	UHGV-0197789_38	MTase_II_00075	42.7	5.4e-19	Type II methyltransferase	RM
Pfam	UHGV-0197789_38	PF02086	N/A	N/A	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
structural_annotation	UHGV-0197789_38	PF02086,NF008152,COG0338	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0197789	Yes	30,298	48	100	1
UHGV-1387904	No	30,316	48	100	1
UHGV-1453389	No	15,329	48	53	1
UHGV-0149765	No	22,219	48	42	1