vOTU vOTU-081156

vOTU: vOTU-081156

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-081156
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00317 → vGENUS-04156 → vSUBGEN-44144 → vOTU-081156
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0039168
Biosample ID	N/A
Genome length (bp)	35,066 bps
CheckV completeness	99.90% (High-quality)
CDS count	52
CDS density	89.66%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus	Total connections	57	Host agreement	80.7
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus	Total connections	3	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0039168_1	phrog_14030	135.5	3.09999e-40	N/A	unknown function
UniRef90	UHGV-0039168_1	UniRef90_A0A316NTC6	185.0	0	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0039168_1	1121115.AXVN01000051_gene809	152.0	9.37469e-43	NLP P60 protein	N/A
Pfam	UHGV-0039168_1	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
Pfam	UHGV-0039168_1	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0039168_1	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0039168_1	PF01471,PF05382,NF038080,NF033742,COG3409,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-0039168_2	phrog_1863	54.3	9.4e-16	N/A	unknown function
eggNOG-mapper	UHGV-0039168_2	1226322.HMPREF1545_04027	72.0	0.00000000000000136	N/A	N/A
PHROG	UHGV-0039168_3	phrog_1129	67.9	1.1e-19	holin	lysis
UniRef90	UHGV-0039168_3	UniRef90_UPI00189DD88C	124.0	1.71e-35	phage holin family protein	N/A
eggNOG-mapper	UHGV-0039168_3	1226322.HMPREF1545_00069	127.0	2.53e-37	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0039168_3	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0039168_3	PF06946	N/A	N/A	N/A	N/A
UniRef90	UHGV-0039168_4	UniRef90_A0A8D9PDT6	64.3	0.0000000000137	Transcriptional regulatory protein	N/A
Pfam	UHGV-0039168_4	PF00196	N/A	N/A	Bacterial regulatory proteins, luxR family	GerE
COG	UHGV-0039168_4	COG2197	N/A	N/A	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	N/A
UniRef90	UHGV-0039168_7	UniRef90_A0A8F0WD75	66.6	0.000000000168	RNA polymerase sigma factor/Ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-0039168_7	1408437.JNJN01000043_gene801	74.7	0.000000000000027	N/A	N/A
KOfam	UHGV-0039168_8	K14059	213.4	0	int; integrase	N/A
PHROG	UHGV-0039168_8	phrog_1	185.3	0	integrase	integration and excision
UniRef90	UHGV-0039168_8	UniRef90_UPI00137B35AA	226.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0039168_8	903814.ELI_2773	211.0	0	Phage integrase family	N/A
Pfam	UHGV-0039168_8	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0039168_8	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0039168_8	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0039168_8	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0039168_10	742741.HMPREF9475_00398	59.7	0.0000000756	N/A	N/A
COG	UHGV-0039168_11	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-0039168_11	PF13443,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0039168_12	K22300	70.1	5e-20	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0039168_12	phrog_8	67.2	3.2e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-0039168_12	UniRef90_UPI000D1E8240	72.0	0.0000000000000311	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0039168_12	1443125.Z962_p0007	62.4	0.000000000047	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-0039168_12	retron_type_VI_hth_cluster2_1	40.2	0.000000000093	N/A	Retron
Pfam	UHGV-0039168_12	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0039168_12	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0039168_12	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0039168_14	K22300	63.5	5.2e-18	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0039168_14	phrog_8	56.5	7.8e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0039168_14	UniRef90_UPI001BB47897	67.8	0.000000000000247	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0039168_14	1226322.HMPREF1545_00090	60.5	0.0000000000305	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0039168_14	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0039168_14	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0039168_14	PF01381,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0039168_15	phrog_6499	117.2	7.5e-35	transcriptional regulator	transcription regulation
UniRef90	UHGV-0039168_15	UniRef90_A0A3D4EJF0	128.0	6.07e-35	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0039168_15	1415774.U728_1274	105.0	3.85e-27	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0039168_15	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0039168_15	COG1813	N/A	N/A	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	N/A
structural_annotation	UHGV-0039168_15	PF01381,MF_00535,NF040522,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0039168_17	UniRef90_UPI001C96492F	55.1	0.000000127	excisionase family DNA-binding protein	N/A
Pfam	UHGV-0039168_17	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-0039168_17	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
structural_annotation	UHGV-0039168_17	PF12728,MF_01155,TIGR01764,COG3311	N/A	N/A	N/A	N/A
KOfam	UHGV-0039168_18	K00390	47.8	0.00000000000022	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0039168_18	phrog_424	41.6	0.000000000017	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0039168_18	UniRef90_A0A098AZU2	187.0	0	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes (Fragment)	N/A
eggNOG-mapper	UHGV-0039168_18	1235800.C819_02256	202.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
Pfam	UHGV-0039168_18	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0039168_18	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
KOfam	UHGV-0039168_19	K00390	43.5	0.0000000000047	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0039168_19	phrog_424	46.2	0.00000000000068	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0039168_19	UniRef90_A0A1C5UE00	141.0	2.08e-38	Phosphoadenosine phosphosulfate reductase family	N/A
eggNOG-mapper	UHGV-0039168_19	1235800.C819_02256	283.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
Pfam	UHGV-0039168_19	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0039168_19	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0039168_19	PF01507,MF_00063,TIGR02055,COG0175	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0039168_20	PF01423,MF_00257,NF001963,COG1958	N/A	N/A	N/A	N/A
PHROG	UHGV-0039168_22	phrog_270	97.7	1.7e-28	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0039168_22	UniRef90_UPI001F33ADD3	196.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0039168_22	663278.Ethha_1883	115.0	4.96e-28	N/A	N/A
Pfam	UHGV-0039168_22	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-0039168_22	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0039168_22	PF02295,MF_01819,TIGR04176,COG3355	N/A	N/A	N/A	N/A
KOfam	UHGV-0039168_23	K02314	236.3	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0039168_23	phrog_19	226.8	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0039168_23	UniRef90_A0A3D1V9Y4	235.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-0039168_23	663278.Ethha_2283	147.0	1.31e-36	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-0039168_23	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0039168_23	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0039168_23	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0039168_23	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
KOfam	UHGV-0039168_24	K03496	190.0	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0039168_24	phrog_164	161.5	0	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0039168_24	UniRef90_A0A845R968	307.0	0	ParA family protein	N/A
eggNOG-mapper	UHGV-0039168_24	742738.HMPREF9460_00854	199.0	0	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	N/A
Pfam	UHGV-0039168_24	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0039168_24	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0039168_24	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
KOfam	UHGV-0039168_25	K03497	78.0	1.6e-22	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0039168_25	phrog_27290	324.7	0	N/A	unknown function
UniRef90	UHGV-0039168_25	UniRef90_G4L1G7	308.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0039168_25	693746.OBV_19860	308.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-0039168_25	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0039168_25	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0039168_25	PF12961,PF02195,MF_02015,MF_00684,TIGR04285,NF003443,COG1475,COG3097	N/A	N/A	N/A	N/A
UniRef90	UHGV-0039168_27	UniRef90_A0A8D9PDT5	62.8	0.000000000179	Hydrogenase/urease nickel incorporation protein	N/A
KOfam	UHGV-0039168_30	K07319	146.7	9.80909e-45	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-0039168_30	phrog_67	141.1	6.39973e-42	DNA methyltransferase	other
UniRef90	UHGV-0039168_30	UniRef90_UPI00055C7461	223.0	0	site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-0039168_30	1444310.JANV01000096_gene3256	120.0	1.54e-28	DNA methylase	N/A
PADLOC	UHGV-0039168_30	MTase_II_00157	123.0	3.4e-37	Type II methyltransferase	RM
Pfam	UHGV-0039168_30	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0039168_30	COG2189	N/A	N/A	Adenine specific DNA methylase Mod	N/A
structural_annotation	UHGV-0039168_30	PF01555,MF_01872,NF008572,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-0039168_31	phrog_3584	125.1	5.9e-37	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0039168_31	742738.HMPREF9460_00867	127.0	3.54e-33	N/A	N/A
structural_annotation	UHGV-0039168_31	PF01446,NF041486	N/A	N/A	N/A	N/A
UniRef90	UHGV-0039168_32	UniRef90_UPI001F232519	72.8	0.00000000000000141	cysteine-rich KTR domain-containing protein	N/A
eggNOG-mapper	UHGV-0039168_32	742738.HMPREF9460_00868	82.8	2.63e-20	Cysteine-rich KTR	N/A
Pfam	UHGV-0039168_32	PF14205	N/A	N/A	Cysteine-rich KTR	Cys_rich_KTR
structural_annotation	UHGV-0039168_32	PF14205	N/A	N/A	N/A	N/A
Pfam	UHGV-0039168_33	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0039168_33	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0039168_34	phrog_9	254.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-0039168_34	UniRef90_R5EM34	939.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0039168_34	491915.Aflv_0661	555.0	0	Phage Terminase	N/A
Pfam	UHGV-0039168_34	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0039168_34	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0039168_34	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0039168_34	PF20441,PF03354,MF_04013,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0039168_35	phrog_12	130.7	9.9e-39	portal protein	head and packaging
UniRef90	UHGV-0039168_35	UniRef90_R5ENV9	335.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0039168_35	1121423.JONT01000042_gene1421	337.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0039168_35	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0039168_35	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0039168_35	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0039168_35	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0039168_36	K06904	120.6	1.6e-35	N/A	N/A
PHROG	UHGV-0039168_36	phrog_80	122.5	4.7e-36	head maturation protease	head and packaging
UniRef90	UHGV-0039168_36	UniRef90_UPI001D141099	143.0	8.30999e-40	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0039168_36	398512.JQKC01000009_gene450	138.0	1.26e-38	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-0039168_36	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0039168_36	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0039168_36	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0039168_36	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0039168_37	phrog_10	166.7	0	major head protein	head and packaging
UniRef90	UHGV-0039168_37	UniRef90_A0A2V2FJ37	384.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0039168_37	642492.Clole_0744	359.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0039168_37	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0039168_37	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0039168_37	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0039168_37	PF05065,PF18316,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0039168_38	phrog_88	51.8	0.000000000000013	major tail protein	tail
UniRef90	UHGV-0039168_38	UniRef90_R5EB96	236.0	0	Phage major tail protein phi13 family	N/A
structural_annotation	UHGV-0039168_38	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0039168_39	phrog_2550	45.3	0.00000000000098	N/A	unknown function
UniRef90	UHGV-0039168_39	UniRef90_UPI0008717716	59.3	0.00000000208	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-0039168_40	349161.Dred_2602	50.4	0.00000208	N/A	N/A
structural_annotation	UHGV-0039168_40	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0039168_41	PF11367,MF_00632	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0039168_42	TIGR01725,COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0039168_43	PF11836,TIGR01674	N/A	N/A	N/A	N/A
PHROG	UHGV-0039168_44	phrog_58	108.7	7.8e-32	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0039168_44	411470.RUMGNA_02076	103.0	3.1e-20	Phage tail tape measure protein, TP901 family	N/A
COG	UHGV-0039168_44	COG5283	N/A	N/A	Phage-related tail protein	N/A
PHROG	UHGV-0039168_45	phrog_13564	52.7	0.0000000000000026	minor tail protein	tail
structural_annotation	UHGV-0039168_45	PF16774,PF20753,TIGR01633,COG4722	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0039168_46	PF14594,TIGR01646,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0039168_52	phrog_14030	74.6	1.4e-21	N/A	unknown function
UniRef90	UHGV-0039168_52	UniRef90_A0A4R4FEU7	80.5	2.44e-17	NlpC/P60 domain-containing protein	N/A
eggNOG-mapper	UHGV-0039168_52	1121115.AXVN01000051_gene809	103.0	1.11e-25	NLP P60 protein	N/A
COG	UHGV-0039168_52	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0039168	Yes	35,066	57	100	1