vOTU vOTU-081173

vOTU: vOTU-081173

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-081173
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00799 → vGENUS-16779 → vSUBGEN-30596 → vOTU-081173
Host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Longicatena → Longicatena caecimuris
Host range breadth	Species
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0244207
Biosample ID	SAMN05930829
Genome length (bp)	39,020 bps
CheckV completeness	95.18% (High-quality)
CDS count	53
CDS density	93.79%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Longicatena → Longicatena caecimuris	Total connections	43	Host agreement	97.67
PHIST-predicted host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Longicatena → Longicatena caecimuris	Total connections	7	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 95.18)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0244207_2	phrog_11623	200.7	0	N/A	unknown function
UniRef90	UHGV-0244207_2	UniRef90_UPI0018AA0E0C	550.0	0	N/A	N/A
eggNOG-mapper	UHGV-0244207_2	545696.HOLDEFILI_00066	218.0	0	N/A	N/A
Pfam	UHGV-0244207_2	PF12873	N/A	N/A	N/A	DUF3825
COG	UHGV-0244207_2	COG1278	N/A	N/A	Cold shock protein, CspA family	N/A
structural_annotation	UHGV-0244207_2	PF12873	N/A	N/A	N/A	N/A
PHROG	UHGV-0244207_3	phrog_8781	60.0	4.5e-17	endolysin	lysis
UniRef90	UHGV-0244207_3	UniRef90_U5F7D4	483.0	0	Peptidase C51 domain-containing protein	N/A
eggNOG-mapper	UHGV-0244207_3	552396.HMPREF0863_01651	483.0	0	lysozyme activity	N/A
Pfam	UHGV-0244207_3	PF05257	N/A	N/A	CHAP domain	CHAP
COG	UHGV-0244207_3	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0244207_3	PF06940,TIGR02594,COG3942	N/A	N/A	N/A	N/A
UniRef90	UHGV-0244207_4	UniRef90_A0A4R4FF68	113.0	6.93e-31	CTP synthase	N/A
eggNOG-mapper	UHGV-0244207_4	552396.HMPREF0863_01650	185.0	0	N/A	N/A
PHROG	UHGV-0244207_5	phrog_1129	87.0	1.2e-25	holin	lysis
UniRef90	UHGV-0244207_5	UniRef90_A0A3E3DX81	134.0	2.39e-39	Holin	N/A
eggNOG-mapper	UHGV-0244207_5	552396.HMPREF0863_01649	166.0	0	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0244207_5	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0244207_5	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0244207_7	phrog_16267	124.8	3.79752e-43	N/A	unknown function
UniRef90	UHGV-0244207_7	UniRef90_U5F6T9	2422.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0244207_7	552396.HMPREF0863_01647	2422.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0244207_7	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
COG	UHGV-0244207_7	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0244207_7	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0244207_8	phrog_1401	62.2	8.1e-18	N/A	unknown function
UniRef90	UHGV-0244207_8	UniRef90_A0A7C6P910	59.3	0.00000000815	N/A	N/A
eggNOG-mapper	UHGV-0244207_8	1262449.CP6013_3212	71.6	0.0000000000000233	N/A	N/A
structural_annotation	UHGV-0244207_8	PF07761	N/A	N/A	N/A	N/A
PHROG	UHGV-0244207_9	phrog_1194	64.2	1.9e-18	N/A	unknown function
eggNOG-mapper	UHGV-0244207_9	552396.HMPREF0863_01645	239.0	0	N/A	N/A
structural_annotation	UHGV-0244207_9	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0244207_10	phrog_1535	310.5	0	tail length tape measure protein	tail
UniRef90	UHGV-0244207_10	UniRef90_A0A4R3TDI6	945.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0244207_10	552396.HMPREF0863_01644	1535.0	0	phage tail tape measure protein	N/A
COG	UHGV-0244207_10	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-0244207_11	phrog_8355	122.4	8.4e-37	N/A	unknown function
UniRef90	UHGV-0244207_11	UniRef90_A0A4R3TDU8	169.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0244207_11	552396.HMPREF0863_01643	184.0	0	N/A	N/A
PHROG	UHGV-0244207_12	phrog_8300	89.0	3.6e-26	N/A	unknown function
eggNOG-mapper	UHGV-0244207_12	658659.HMPREF0983_03300	92.0	1.2e-22	N/A	N/A
structural_annotation	UHGV-0244207_12	PF06896	N/A	N/A	N/A	N/A
PHROG	UHGV-0244207_13	phrog_820	120.1	1.2e-35	major tail protein	tail
UniRef90	UHGV-0244207_13	UniRef90_A0A7D6ZFT1	207.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0244207_13	552396.HMPREF0863_01641	310.0	0	domain, Protein	N/A
COG	UHGV-0244207_13	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0244207_13	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0244207_14	phrog_2595	98.9	4e-29	head-tail connector protein	connector
UniRef90	UHGV-0244207_14	UniRef90_UPI001D0A149F	202.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0244207_14	552396.HMPREF0863_01640	268.0	0	N/A	N/A
Pfam	UHGV-0244207_14	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-0244207_14	PF12691,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0244207_15	phrog_556	69.3	5.1e-20	minor head protein	head and packaging
UniRef90	UHGV-0244207_15	UniRef90_UPI000246D598	225.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0244207_15	552396.HMPREF0863_01639	262.0	0	N/A	N/A
PHROG	UHGV-0244207_16	phrog_8710	125.6	1.8e-37	N/A	unknown function
eggNOG-mapper	UHGV-0244207_16	552396.HMPREF0863_01638	229.0	0	N/A	N/A
structural_annotation	UHGV-0244207_16	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0244207_17	phrog_541	83.3	2.5e-24	head-tail adaptor	connector
eggNOG-mapper	UHGV-0244207_17	552396.HMPREF0863_01637	246.0	0	N/A	N/A
PHROG	UHGV-0244207_18	phrog_1378	73.5	2.3e-21	N/A	unknown function
eggNOG-mapper	UHGV-0244207_18	552396.HMPREF0863_01636	140.0	5.63322e-43	N/A	N/A
PHROG	UHGV-0244207_19	phrog_422	323.1	0	major head protein	head and packaging
UniRef90	UHGV-0244207_19	UniRef90_A0A3E2WBR9	434.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-0244207_19	552396.HMPREF0863_01635	600.0	0	N/A	N/A
structural_annotation	UHGV-0244207_19	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0244207_20	phrog_2303	155.9	0	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-0244207_20	552396.HMPREF0863_01634	397.0	0	N/A	N/A
PHROG	UHGV-0244207_23	phrog_581	303.7	0	minor head protein	head and packaging
UniRef90	UHGV-0244207_23	UniRef90_A0A4R3TEM7	1056.0	0	Minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0244207_23	552396.HMPREF0863_01630	1162.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0244207_23	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
structural_annotation	UHGV-0244207_23	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0244207_24	phrog_533	283.2	0	portal protein	head and packaging
UniRef90	UHGV-0244207_24	UniRef90_A0A1C6JYD4	523.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0244207_24	552396.HMPREF0863_01629	1022.0	0	N/A	N/A
structural_annotation	UHGV-0244207_24	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0244207_25	K06909	89.5	4.4e-26	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0244207_25	phrog_2	73.0	6.2e-21	terminase large subunit	head and packaging
UniRef90	UHGV-0244207_25	UniRef90_U5F7S3	924.0	0	PBSX family phage terminase, large subunit	N/A
eggNOG-mapper	UHGV-0244207_25	552396.HMPREF0863_01628	924.0	0	Phage terminase, large subunit, PBSX family	N/A
COG	UHGV-0244207_25	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0244207_25	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0244207_26	phrog_509	257.2	0	terminase small subunit	head and packaging
UniRef90	UHGV-0244207_26	UniRef90_A0A223MIM3	305.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0244207_26	552396.HMPREF0863_04210	424.0	0	DNA packaging	N/A
Pfam	UHGV-0244207_26	PF10668	N/A	N/A	Phage terminase small subunit	Phage_terminase
NCBIFam	UHGV-0244207_26	NF040601.1	N/A	N/A	phage terminase small subunit	N/A
COG	UHGV-0244207_26	COG5484	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0244207_26	NF040601,COG5484	N/A	N/A	N/A	N/A
PHROG	UHGV-0244207_28	phrog_5816	49.1	0.000000000000059	N/A	unknown function
UniRef90	UHGV-0244207_28	UniRef90_U5F4N2	221.0	0	N/A	N/A
eggNOG-mapper	UHGV-0244207_28	552396.HMPREF0863_02848	221.0	0	N/A	N/A
Pfam	UHGV-0244207_28	PF14213	N/A	N/A	N/A	DUF4325
structural_annotation	UHGV-0244207_28	PF14213	N/A	N/A	N/A	N/A
PHROG	UHGV-0244207_29	phrog_3364	109.4	3.1e-32	N/A	unknown function
UniRef90	UHGV-0244207_29	UniRef90_A0A5C8CIR6	140.0	5.32e-35	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0244207_29	552396.HMPREF0863_02847	693.0	0	N/A	N/A
structural_annotation	UHGV-0244207_29	PF02518,PF01740,MF_00637,TIGR01925,TIGR00377,COG2172	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0244207_30	999413.HMPREF1094_00224	229.0	0	N/A	N/A
PHROG	UHGV-0244207_33	phrog_1891	208.8	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0244207_33	UniRef90_U5F4X4	430.0	0	HNHc domain-containing protein	N/A
eggNOG-mapper	UHGV-0244207_33	552396.HMPREF0863_02431	430.0	0	HNH endonuclease	N/A
Pfam	UHGV-0244207_33	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-0244207_33	PF13392	N/A	N/A	N/A	N/A
PHROG	UHGV-0244207_34	phrog_2044	98.8	2.5e-29	RNA polymerase beta subunit	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0244207_34	552396.HMPREF0863_02432	161.0	0	N/A	N/A
structural_annotation	UHGV-0244207_34	MF_00337,NF010671,COG1722	N/A	N/A	N/A	N/A
KOfam	UHGV-0244207_36	K01160	60.5	4.7e-17	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0244207_36	phrog_140	104.9	7.6e-31	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0244207_36	UniRef90_R9C6Q9	195.0	0	Endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-0244207_36	552396.HMPREF0863_02433	274.0	0	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0244207_36	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0244207_36	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0244207_36	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0244207_37	phrog_23707	60.4	3.1e-17	N/A	unknown function
UniRef90	UHGV-0244207_37	UniRef90_A0A7X5CDD7	65.1	0.00000000000207	Alanine racemase	N/A
eggNOG-mapper	UHGV-0244207_37	552398.HMPREF0866_01624	58.2	0.00000000362	N/A	N/A
structural_annotation	UHGV-0244207_38	PF17574	N/A	N/A	N/A	N/A
KOfam	UHGV-0244207_39	K07505	467.1	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-0244207_39	phrog_2597	1229.1	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0244207_39	UniRef90_U5F5S9	1505.0	0	PriCT_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0244207_39	552396.HMPREF0863_02435	1505.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-0244207_39	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
Pfam	UHGV-0244207_39	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-0244207_39	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-0244207_39	PF13481,PF16793,PF08220,MF_00350,MF_00700,NF006606,NF001641,COG3598,COG3285	N/A	N/A	N/A	N/A
KOfam	UHGV-0244207_40	K17677	349.5	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-0244207_40	phrog_16	291.8	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0244207_40	UniRef90_A0A412G6K1	867.0	0	ATP-dependent helicase	N/A
eggNOG-mapper	UHGV-0244207_40	552396.HMPREF0863_02436	1000.0	0	helicase superfamily c-terminal domain	N/A
PADLOC	UHGV-0244207_40	mREase_IV_00005	138.2	7.50003e-41	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0244207_40	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0244207_40	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0244207_40	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0244207_40	PF04851,PF16203,MF_01489,NF008521,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-0244207_41	phrog_2698	196.7	0	N/A	unknown function
UniRef90	UHGV-0244207_41	UniRef90_UPI001AEC2157	163.0	0	N/A	N/A
eggNOG-mapper	UHGV-0244207_41	552396.HMPREF0863_02437	311.0	0	N/A	N/A
structural_annotation	UHGV-0244207_41	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-0244207_42	phrog_124	249.3	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0244207_42	UniRef90_UPI001EDD2096	539.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0244207_42	552396.HMPREF0863_02438	676.0	0	AAA domain	N/A
Pfam	UHGV-0244207_42	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-0244207_42	PF13479,MF_00268,TIGR01618,COG0468	N/A	N/A	N/A	N/A
KOfam	UHGV-0244207_43	K03546	53.9	0.000000000000002	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-0244207_43	phrog_1499	494.6	0	N/A	unknown function
UniRef90	UHGV-0244207_43	UniRef90_U5F5C5	816.0	0	AAA_15 domain-containing protein	N/A
eggNOG-mapper	UHGV-0244207_43	552396.HMPREF0863_02439	816.0	0	AAA ATPase domain	N/A
Pfam	UHGV-0244207_43	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-0244207_43	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0244207_43	PF11398,MF_00365,NF008121,COG0497	N/A	N/A	N/A	N/A
KOfam	UHGV-0244207_44	K07699	100.5	1.5e-29	spo0A; two-component system, response regulator, stage 0 sporulation protein A	N/A
PHROG	UHGV-0244207_44	phrog_37855	65.1	8.2e-19	N/A	unknown function
UniRef90	UHGV-0244207_44	UniRef90_U5F5T4	230.0	0	Spo0A_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0244207_44	1120998.AUFC01000002_gene2870	77.8	0.00000000000000164	May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process	N/A
Pfam	UHGV-0244207_44	PF08769	N/A	N/A	Sporulation initiation factor Spo0A C terminal	Spo0A_C
COG	UHGV-0244207_44	COG2197	N/A	N/A	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	N/A
structural_annotation	UHGV-0244207_44	PF08769,TIGR02875	N/A	N/A	N/A	N/A
PHROG	UHGV-0244207_49	phrog_19236	53.5	0.0000000000000048	N/A	unknown function
eggNOG-mapper	UHGV-0244207_49	1158614.I592_00581	50.4	0.0000000759	N/A	N/A
PHROG	UHGV-0244207_50	phrog_8	51.3	0.000000000000027	transcriptional regulator	transcription regulation
UniRef90	UHGV-0244207_50	UniRef90_U5F4Z1	86.3	3.02e-21	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0244207_50	552396.HMPREF0863_02446	86.3	5.07e-22	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0244207_50	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0244207_50	PF01381,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0244207_51	K01356	128.4	9e-38	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0244207_51	phrog_4	120.6	1.6e-35	transcriptional repressor	transcription regulation
UniRef90	UHGV-0244207_51	UniRef90_U5F590	333.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0244207_51	552396.HMPREF0863_02447	333.0	0	Represses a number of genes involved in the response to DNA damage (SOS response)	N/A
Pfam	UHGV-0244207_51	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0244207_51	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0244207_51	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0244207_51	PF00717,PF12844,MF_00015,NF007621,NF041951,COG2932	N/A	N/A	N/A	N/A
KOfam	UHGV-0244207_53	K14059	225.3	0	int; integrase	N/A
PHROG	UHGV-0244207_53	phrog_1	194.8	0	integrase	integration and excision
UniRef90	UHGV-0244207_53	UniRef90_A0A4R3TFR6	763.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0244207_53	552396.HMPREF0863_02449	492.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0244207_53	PF14657	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_4
Pfam	UHGV-0244207_53	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0244207_53	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0244207_53	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0244207_53	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0244207	Yes	39,020	38	95	1
UHGV-0046597	No	20,983	39	51	1