vOTU vOTU-081256

vOTU: vOTU-081256

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-081256
Number of genomes	3
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-03517 → vGENUS-09524 → vSUBGEN-11316 → vOTU-081256
Host lineage
Host range breadth
Lifestyle	temperate (Evidence: integrase)

Representative genome
Genome ID	UHGV-0309581
Biosample ID	N/A
Genome length (bp)	37,229 bps
CheckV completeness	99.90% (High-quality)
CDS count	57
CDS density	94.72%
tRNA count	1
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method
CRISPR-predicted host lineage	Total connections	Host agreement
PHIST-predicted host lineage	Total connections	Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0309581_2	phrog_119	53.7	0.0000000000000029	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0309581_2	UniRef90_A0A414B846	140.0	2.92997e-41	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0309581_2	33035.JPJF01000113_gene2099	141.0	4.21931e-42	HNH nucleases	N/A
COG	UHGV-0309581_2	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0309581_2	TIGR02646	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0309581_5	PF07374,TIGR01636	N/A	N/A	N/A	N/A
KOfam	UHGV-0309581_13	K01160	60.3	5.6e-17	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0309581_13	phrog_140	95.7	5e-28	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0309581_13	UniRef90_A0A3A6NAH2	139.0	1.22e-39	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0309581_13	1127695.HMPREF9163_00374	132.0	1.72e-37	crossover junction endodeoxyribonuclease	N/A
Pfam	UHGV-0309581_13	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0309581_13	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0309581_13	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0309581_16	K02315	166.3	0	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0309581_16	phrog_50	154.4	0	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0309581_16	UniRef90_R6DSN6	196.0	0	Replicative DNA helicase	N/A
eggNOG-mapper	UHGV-0309581_16	1280694.AUJQ01000001_gene1885	176.0	0	N/A	N/A
Pfam	UHGV-0309581_16	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
NCBIFam	UHGV-0309581_16	NF005992.0	N/A	N/A	hypothetical protein	N/A
COG	UHGV-0309581_16	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0309581_16	PF01695,MF_01158,NF005992,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-0309581_17	phrog_16304	51.7	0.000000000000021	N/A	unknown function
eggNOG-mapper	UHGV-0309581_17	1139219.I569_00067	94.4	1.87e-20	DnaD domain protein	N/A
Pfam	UHGV-0309581_17	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-0309581_17	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0309581_17	PF19808	N/A	N/A	N/A	N/A
PHROG	UHGV-0309581_19	phrog_18107	76.0	5.7e-22	N/A	unknown function
UniRef90	UHGV-0309581_19	UniRef90_R7F806	78.6	0.0000000000000224	PF05037 family protein	N/A
eggNOG-mapper	UHGV-0309581_19	1304866.K413DRAFT_0826	114.0	7.11e-29	N/A	N/A
PHROG	UHGV-0309581_20	phrog_2872	210.0	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0309581_20	UniRef90_A0A8J6P193	240.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0309581_20	1449050.JNLE01000005_gene3946	192.0	0	AAA domain	N/A
Pfam	UHGV-0309581_20	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-0309581_20	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-0309581_21	phrog_253	89.5	4.6e-26	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0309581_21	UniRef90_UPI00101C7D8F	67.0	0.0000000000572	siphovirus Gp157 family protein	N/A
eggNOG-mapper	UHGV-0309581_21	632292.Calhy_0748	58.2	0.0000000213	Siphovirus Gp157	N/A
Pfam	UHGV-0309581_21	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0309581_21	PF05565,NF002139	N/A	N/A	N/A	N/A
PHROG	UHGV-0309581_24	phrog_7713	40.2	0.000000000031	N/A	unknown function
UniRef90	UHGV-0309581_24	UniRef90_UPI001379C673	78.6	3.34e-16	pentapeptide repeat-containing protein	N/A
Pfam	UHGV-0309581_24	PF00805	N/A	N/A	Pentapeptide repeats (8 copies)	Pentapeptide
COG	UHGV-0309581_24	COG1357	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0309581_24	PF00805	N/A	N/A	N/A	N/A
KOfam	UHGV-0309581_29	K22300	69.2	8.2e-20	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0309581_29	phrog_3	51.7	0.000000000000038	transcriptional repressor	transcription regulation
UniRef90	UHGV-0309581_29	UniRef90_R5AEY7	98.2	6.38e-24	Helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0309581_29	887325.HMPREF0381_0352	75.1	0.00000000000000107	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0309581_29	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0309581_29	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0309581_29	PF12844,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0309581_31	phrog_806	56.8	4.4e-16	N/A	unknown function
Pfam	UHGV-0309581_31	PF11611	N/A	N/A	N/A	DUF4352
KOfam	UHGV-0309581_32	K14059	86.0	6.7e-25	int; integrase	N/A
PHROG	UHGV-0309581_32	phrog_1	113.0	3.2e-33	integrase	integration and excision
UniRef90	UHGV-0309581_32	UniRef90_A0A3B9SFS7	197.0	0	Recombinase	N/A
eggNOG-mapper	UHGV-0309581_32	1280689.AUJC01000011_gene1488	184.0	0	Phage integrase family	N/A
COG	UHGV-0309581_32	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0309581_32	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0309581_34	K19123	252.1	0	casA, cse1; CRISPR system Cascade subunit CasA	N/A
UniRef90	UHGV-0309581_34	UniRef90_A0A1Y4WE57	419.0	0	Type I-E CRISPR-associated protein Cse1/CasA	N/A
eggNOG-mapper	UHGV-0309581_34	411473.RUMCAL_01178	372.0	0	CRISPR system CASCADE complex protein CasA	N/A
PADLOC	UHGV-0309581_34	pfam09481	273.0	0	CAS-I-E; effector_LS	CRISPR-CAS
Pfam	UHGV-0309581_34	PF09481	N/A	N/A	CRISPR-associated protein Cse1 (CRISPR_cse1)	CRISPR_Cse1
NCBIFam	UHGV-0309581_34	TIGR02547.1	N/A	N/A	type I-E CRISPR-associated protein Cse1/CasA	N/A
COG	UHGV-0309581_34	COG1203	N/A	N/A	CRISPR-Cas type I system-associated endonuclease/helicase Cas3	N/A
PHROG	UHGV-0309581_37	phrog_6160	158.3	0	N/A	unknown function
eggNOG-mapper	UHGV-0309581_37	1121382.JQKG01000014_gene300	114.0	2.96e-26	N/A	N/A
KOfam	UHGV-0309581_38	K22409	60.5	2.6e-17	sle1; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0309581_38	phrog_9589	76.7	5.1e-28	endolysin	lysis
UniRef90	UHGV-0309581_38	UniRef90_UPI000B195CAC	203.0	0	LysM peptidoglycan-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0309581_38	1384066.JAGT01000001_gene784	174.0	0	cellulase activity	N/A
Pfam	UHGV-0309581_38	PF01476	N/A	N/A	LysM domain	LysM
Pfam	UHGV-0309581_38	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0309581_38	COG0741	N/A	N/A	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	N/A
structural_annotation	UHGV-0309581_38	PF00877,TIGR02594,COG3942	N/A	N/A	N/A	N/A
PHROG	UHGV-0309581_39	phrog_881	77.1	1.4e-22	holin	lysis
UniRef90	UHGV-0309581_39	UniRef90_UPI001D0692FC	103.0	1.01e-27	phage holin	N/A
eggNOG-mapper	UHGV-0309581_39	742740.HMPREF9474_02251	102.0	6.34e-28	Putative phage holin Dp-1	N/A
Pfam	UHGV-0309581_39	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-0309581_39	PF16938	N/A	N/A	N/A	N/A
PHROG	UHGV-0309581_40	phrog_4105	46.0	0.000000000000019	N/A	unknown function
eggNOG-mapper	UHGV-0309581_40	411459.RUMOBE_00911	61.2	0.000000000216	N/A	N/A
UniRef90	UHGV-0309581_41	UniRef90_UPI00103270B2	55.8	0.00000216	sugar-binding protein	N/A
eggNOG-mapper	UHGV-0309581_41	1203606.HMPREF1526_01926	69.7	0.00000000000476	N/A	N/A
eggNOG-mapper	UHGV-0309581_42	476272.RUMHYD_00002	97.4	9.48e-18	N/A	N/A
PHROG	UHGV-0309581_43	phrog_372	278.0	0	tail protein	tail
UniRef90	UHGV-0309581_43	UniRef90_A0A351TJT1	233.0	0	Pilus assembly protein	N/A
eggNOG-mapper	UHGV-0309581_43	1235799.C818_01005	215.0	0	the current gene model (or a revised gene model) may contain a frame shift	N/A
Pfam	UHGV-0309581_43	PF05895	N/A	N/A	N/A	DUF859
COG	UHGV-0309581_43	COG4675	N/A	N/A	Phage tail collar domain	N/A
KOfam	UHGV-0309581_44	K06675	41.2	0.0000000000056	SMC4; structural maintenance of chromosome 4	N/A
PHROG	UHGV-0309581_44	phrog_13289	419.1	0	tail protein	tail
UniRef90	UHGV-0309581_44	UniRef90_A0A350V7A9	600.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0309581_44	1235798.C817_02568	441.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0309581_44	PF18994	N/A	N/A	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
Pfam	UHGV-0309581_44	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0309581_44	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0309581_44	COG2885	N/A	N/A	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	N/A
PHROG	UHGV-0309581_45	phrog_33	73.4	5.4e-21	distal tail protein Dit	tail
UniRef90	UHGV-0309581_45	UniRef90_A0A3R6C171	220.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0309581_45	908340.HMPREF9406_2569	182.0	0	phage tail	N/A
NCBIFam	UHGV-0309581_45	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0309581_45	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0309581_45	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0309581_46	phrog_58	247.2	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0309581_46	1232452.BAIB02000007_gene1616	222.0	0	phage tail tape measure protein	N/A
COG	UHGV-0309581_46	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0309581_46	PF20155,COG5280	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0309581_47	1235798.C817_04591	141.0	2.89004e-41	N/A	N/A
structural_annotation	UHGV-0309581_47	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0309581_48	phrog_88	79.2	6.2e-23	major tail protein	tail
UniRef90	UHGV-0309581_48	UniRef90_A0A1Y4R540	211.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0309581_48	33035.JPJF01000039_gene278	194.0	0	N/A	N/A
Pfam	UHGV-0309581_48	PF18316	N/A	N/A	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
structural_annotation	UHGV-0309581_48	PF06488,PF18316,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0309581_49	phrog_5	45.7	0.0000000000015	tail completion or Neck1 protein	connector
UniRef90	UHGV-0309581_49	UniRef90_R6FMT8	155.0	2.8026e-45	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0309581_49	33035.JPJF01000039_gene277	169.0	0	N/A	N/A
structural_annotation	UHGV-0309581_49	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0309581_50	1232446.BAIE02000002_gene829	109.0	1.58e-29	N/A	N/A
structural_annotation	UHGV-0309581_50	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0309581_51	phrog_19734	106.9	1.4e-31	N/A	unknown function
UniRef90	UHGV-0309581_51	UniRef90_A0A414B852	104.0	1.14e-26	Head-tail adaptor protein	N/A
eggNOG-mapper	UHGV-0309581_51	1235798.C817_04587	102.0	2.47e-26	N/A	N/A
structural_annotation	UHGV-0309581_51	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0309581_52	phrog_2550	78.6	4.2e-23	N/A	unknown function
UniRef90	UHGV-0309581_52	UniRef90_R5V091	59.3	0.00000000174	Phage related protein	N/A
eggNOG-mapper	UHGV-0309581_52	1235798.C817_04586	103.0	8.82e-28	N/A	N/A
structural_annotation	UHGV-0309581_52	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0309581_53	phrog_10	193.6	0	major head protein	head and packaging
UniRef90	UHGV-0309581_53	UniRef90_A0A1C6CI17	688.0	0	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
eggNOG-mapper	UHGV-0309581_53	1226322.HMPREF1545_00116	615.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0309581_53	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-0309581_53	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-0309581_53	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0309581_53	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0309581_53	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0309581_54	K06904	165.4	0	N/A	N/A
PHROG	UHGV-0309581_54	phrog_80	183.9	0	head maturation protease	head and packaging
UniRef90	UHGV-0309581_54	UniRef90_UPI0008716C68	170.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0309581_54	1232453.BAIF02000028_gene2722	158.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-0309581_54	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0309581_54	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0309581_54	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0309581_54	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0309581_55	phrog_12	175.2	0	portal protein	head and packaging
UniRef90	UHGV-0309581_55	UniRef90_A0A1Y4R7B9	567.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0309581_55	1226322.HMPREF1545_00114	484.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0309581_55	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0309581_55	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0309581_55	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0309581_55	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0309581_56	phrog_9	308.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-0309581_56	UniRef90_A0A1Y4R6J8	1041.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0309581_56	1226322.HMPREF1545_00113	898.0	0	Phage Terminase	N/A
Pfam	UHGV-0309581_56	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0309581_56	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0309581_56	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0309581_56	PF20441,PF03354,MF_04013,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0309581_57	phrog_361	62.4	7e-18	terminase small subunit	head and packaging
UniRef90	UHGV-0309581_57	UniRef90_UPI0007C801FA	90.5	3.63e-21	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0309581_57	1497679.EP56_05710	86.7	3.14e-20	Phage terminase, small subunit	N/A
Pfam	UHGV-0309581_57	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
COG	UHGV-0309581_57	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0309581_57	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0309581	Yes	37,229	50	100	1
UHGV-0878655	No	21,458	49	61	1
UHGV-2190658	No	21,454	49	61	1