vOTU vOTU-081372

vOTU: vOTU-081372

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-081372
Number of genomes	1
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00751 → vGENUS-03450 → vSUBGEN-07116 → vOTU-081372
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus → Limivicinus sp900549865
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0004417
Biosample ID	SAMEA4766126
Genome length (bp)	36,238 bps
CheckV completeness	94.69% (High-quality)
CDS count	47
CDS density	94.48%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus → Limivicinus sp900549865	Total connections	17	Host agreement	70.59
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 94.69)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0004417_1	1232447.BAHW02000040_gene2762	71.6	0.0000000000000135	Nucleotidyl transferase AbiEii toxin, Type IV TA system	N/A
COG	UHGV-0004417_1	COG2253	N/A	N/A	Predicted nucleotidyltransferase component of viral defense system	N/A
UniRef90	UHGV-0004417_2	UniRef90_A0A1Q6S525	385.0	0	Abortive phage infection protein	N/A
eggNOG-mapper	UHGV-0004417_2	397287.C807_03437	260.0	0	Transcriptional regulator, AbiEi antitoxin	N/A
PADLOC	UHGV-0004417_2	AbiEi_WP_047105540.1	197.6	0	AbiEi	Abi
COG	UHGV-0004417_2	COG5340	N/A	N/A	Abortive phage infection protein AbiEi, antitoxin conponent of an AbiEi-AbiEii TA system	N/A
structural_annotation	UHGV-0004417_2	PF13338,PF09407,COG5340	N/A	N/A	N/A	N/A
KOfam	UHGV-0004417_3	K14059	125.7	6.5e-37	int; integrase	N/A
PHROG	UHGV-0004417_3	phrog_1	134.0	1.6e-39	integrase	integration and excision
UniRef90	UHGV-0004417_3	UniRef90_A0A2Z4QB94	291.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0004417_3	643648.Slip_1975	78.6	0.000000000000252	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0004417_3	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0004417_3	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0004417_3	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0004417_4	PF13560,MF_00535,TIGR03070,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0004417_6	UniRef90_UPI0013DE7A28	122.0	3.65e-33	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0004417_6	748224.HMPREF9436_01444	76.3	0.00000000000000119	N/A	N/A
Pfam	UHGV-0004417_6	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0004417_6	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0004417_6	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0004417_13	PF21291,TIGR03070,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0004417_14	phrog_824	160.2	0	N/A	unknown function
UniRef90	UHGV-0004417_14	UniRef90_A0A6N8GXS9	157.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0004417_14	665956.HMPREF1032_00132	134.0	2.06e-38	VRR_NUC	N/A
Pfam	UHGV-0004417_14	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
KOfam	UHGV-0004417_17	K00558	152.8	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0004417_17	phrog_363	232.9	0	DNA methyltransferase	other
UniRef90	UHGV-0004417_17	UniRef90_G4KRB8	337.0	0	Cytosine-specific methyltransferase	N/A
eggNOG-mapper	UHGV-0004417_17	693746.OBV_01900	337.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
PADLOC	UHGV-0004417_17	MTase_II_00058	112.6	1.9e-33	Type II methyltransferase	RM
Pfam	UHGV-0004417_17	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-0004417_17	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-0004417_17	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0004417_17	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0004417_21	phrog_954	187.5	0	DNA methyltransferase	other
UniRef90	UHGV-0004417_21	UniRef90_A0A498CN80	258.0	0	Class I SAM-dependent methyltransferase	N/A
eggNOG-mapper	UHGV-0004417_21	411461.DORFOR_01143	255.0	0	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	N/A
PADLOC	UHGV-0004417_21	MTase_II_00074	192.7	0	Type II methyltransferase	RM
Pfam	UHGV-0004417_21	PF08241	N/A	N/A	Methyltransferase domain	Methyltransf_11
COG	UHGV-0004417_21	COG1092	N/A	N/A	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	N/A
structural_annotation	UHGV-0004417_21	PF05148,MF_03044,NF033398,COG1041	N/A	N/A	N/A	N/A
PHROG	UHGV-0004417_23	phrog_3584	168.4	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0004417_23	1226322.HMPREF1545_03841	270.0	0	N/A	N/A
structural_annotation	UHGV-0004417_23	PF01446,NF041486	N/A	N/A	N/A	N/A
KOfam	UHGV-0004417_26	K07726	49.1	0.00000000000011	K07726; putative transcriptional regulator	N/A
PHROG	UHGV-0004417_26	phrog_2104	43.4	0.0000000000062	N/A	unknown function
UniRef90	UHGV-0004417_26	UniRef90_X8K268	60.1	0.000000000134	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0004417_26	1410631.JHWZ01000002_gene1263	63.5	0.00000000000158	sequence-specific DNA binding	N/A
Pfam	UHGV-0004417_26	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0004417_26	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-0004417_26	PF08965,NF041951,COG2944	N/A	N/A	N/A	N/A
KOfam	UHGV-0004417_29	K07474	94.3	2.8e-27	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0004417_29	phrog_51	98.7	6e-29	terminase small subunit	head and packaging
UniRef90	UHGV-0004417_29	UniRef90_A0A084JIB8	99.4	2.79e-24	Terminase	N/A
eggNOG-mapper	UHGV-0004417_29	318464.IO99_00540	99.4	4.68e-25	Terminase small subunit	N/A
Pfam	UHGV-0004417_29	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0004417_29	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0004417_29	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-0004417_30	K06909	142.7	3.30006e-42	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0004417_30	phrog_979	144.6	3.36312e-44	terminase large subunit	head and packaging
UniRef90	UHGV-0004417_30	UniRef90_A0A3C0NMI6	687.0	0	Terminase-like family protein	N/A
eggNOG-mapper	UHGV-0004417_30	1410650.JHWL01000003_gene2834	564.0	0	N/A	N/A
Pfam	UHGV-0004417_30	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0004417_30	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0004417_30	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0004417_31	phrog_156	286.5	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0004417_31	1410650.JHWL01000003_gene2833	477.0	0	N/A	N/A
structural_annotation	UHGV-0004417_31	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0004417_32	K07584	51.4	0.000000000000023	N/A	N/A
PHROG	UHGV-0004417_32	phrog_4478	49.4	0.000000000000053	peptidase	other
UniRef90	UHGV-0004417_32	UniRef90_R5J236	73.9	0.0000000000000107	Putative ribosomal protein	N/A
eggNOG-mapper	UHGV-0004417_32	1423724.BAMM01000012_gene1426	48.9	0.00000648	Cysteine protease Prp	N/A
Pfam	UHGV-0004417_32	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0004417_32	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0004417_32	PF04327,NF011133,COG2868	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0004417_33	1410650.JHWL01000003_gene2815	123.0	9.3e-29	N/A	N/A
PHROG	UHGV-0004417_34	phrog_22978	590.0	0	N/A	unknown function
eggNOG-mapper	UHGV-0004417_34	1410650.JHWL01000003_gene2814	345.0	0	N/A	N/A
Pfam	UHGV-0004417_34	PF18760	N/A	N/A	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
PHROG	UHGV-0004417_35	phrog_13908	166.0	0	N/A	unknown function
eggNOG-mapper	UHGV-0004417_35	748224.HMPREF9436_01398	58.5	0.00000124	Cysteine protease Prp	N/A
COG	UHGV-0004417_35	COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0004417_36	phrog_1357	220.1	0	major head protein	head and packaging
UniRef90	UHGV-0004417_36	UniRef90_A0A3C0NPN1	538.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0004417_36	1410650.JHWL01000003_gene2830	246.0	0	N/A	N/A
Pfam	UHGV-0004417_36	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0004417_36	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0004417_36	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0004417_37	phrog_15239	58.5	7.7e-17	N/A	unknown function
PHROG	UHGV-0004417_38	phrog_12105	91.1	1.2e-26	N/A	unknown function
eggNOG-mapper	UHGV-0004417_38	1226322.HMPREF1545_03850	67.8	0.000000000000865	N/A	N/A
PHROG	UHGV-0004417_39	phrog_511	226.0	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0004417_39	1410650.JHWL01000003_gene2827	344.0	0	N/A	N/A
structural_annotation	UHGV-0004417_39	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0004417_41	phrog_25979	40.5	0.0000000000092	N/A	unknown function
eggNOG-mapper	UHGV-0004417_41	1519439.JPJG01000060_gene1892	82.8	0.000000000000043	Collagen triple helix repeat (20 copies)	N/A
COG	UHGV-0004417_41	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
structural_annotation	UHGV-0004417_41	PF07353,COG3979	N/A	N/A	N/A	N/A
PHROG	UHGV-0004417_44	phrog_30034	114.6	1.1e-33	N/A	unknown function
UniRef90	UHGV-0004417_44	UniRef90_A0A2Y9CAD1	153.0	2.8026e-45	Carbohydrate binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0004417_44	411460.RUMTOR_02099	132.0	1.61e-36	N/A	N/A
Pfam	UHGV-0004417_44	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
structural_annotation	UHGV-0004417_44	PF14600	N/A	N/A	N/A	N/A
PHROG	UHGV-0004417_45	phrog_20388	89.4	4.9e-26	endolysin	lysis
UniRef90	UHGV-0004417_45	UniRef90_A0A2I0N350	99.8	2.94e-20	N-acetylmuramoyl-L-alanine amidase domain protein	N/A
eggNOG-mapper	UHGV-0004417_45	1121296.JONJ01000026_gene2168	104.0	7.62e-23	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0004417_45	PF18013	N/A	N/A	Phage tail lysozyme	Phage_lysozyme2
Pfam	UHGV-0004417_45	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0004417_45	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
structural_annotation	UHGV-0004417_45	PF18013,PF01471,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-0004417_46	phrog_937	54.6	0.0000000000000021	hemolysin	other
eggNOG-mapper	UHGV-0004417_46	1297617.JPJD01000099_gene2176	88.2	1.33e-21	N/A	N/A
PHROG	UHGV-0004417_47	phrog_881	66.9	2.1e-19	holin	lysis
UniRef90	UHGV-0004417_47	UniRef90_A0A8D9PDR9	79.0	6.76e-18	Holin	N/A
eggNOG-mapper	UHGV-0004417_47	476272.RUMHYD_01966	75.1	4.09e-17	Putative phage holin Dp-1	N/A
Pfam	UHGV-0004417_47	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-0004417_47	PF16938	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0004417	Yes	36,238	58	95	1