vOTU vOTU-081640

vOTU: vOTU-081640

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-081640
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00008 → vSUBFAM-00061 → vGENUS-00169 → vSUBGEN-38742 → vOTU-081640
Host lineage	Bacteria → Firmicutes_C → Negativicutes → Veillonellales → Veillonellaceae → Veillonella → Veillonella parvula_A
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1552411
Biosample ID	N/A
Genome length (bp)	42,402 bps
CheckV completeness	99.90% (High-quality)
CDS count	57
CDS density	95.94%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_C → Negativicutes → Veillonellales → Veillonellaceae → Veillonella → Veillonella parvula_A	Total connections	91	Host agreement	86.81
PHIST-predicted host lineage	Bacteria → Firmicutes_C → Negativicutes → Veillonellales → Veillonellaceae → Veillonella	Total connections	5	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-1552411_2	UniRef90_UPI00196078C8	233.0	0	SprT-like domain-containing protein	N/A
Pfam	UHGV-1552411_2	PF10263	N/A	N/A	SprT-like family	SprT-like
structural_annotation	UHGV-1552411_2	PF10263	N/A	N/A	N/A	N/A
PHROG	UHGV-1552411_3	phrog_10797	246.1	0	N/A	unknown function
UniRef90	UHGV-1552411_3	UniRef90_A0A1B1I041	144.0	5.96999e-40	Glycoprotease	N/A
eggNOG-mapper	UHGV-1552411_3	883156.HMPREF9282_01266	158.0	0	N/A	N/A
structural_annotation	UHGV-1552411_3	PF06531	N/A	N/A	N/A	N/A
PHROG	UHGV-1552411_4	phrog_26249	80.4	1e-23	N/A	unknown function
UniRef90	UHGV-1552411_4	UniRef90_UPI001D017339	148.0	6.15002e-41	chitosanase	N/A
eggNOG-mapper	UHGV-1552411_4	546273.VEIDISOL_01083	246.0	0	LysM domain	N/A
Pfam	UHGV-1552411_4	PF21277	N/A	N/A	Type VI secretion system spike protein VgrG3-like, C-terminal	T6SS_VgrG3-like_C
COG	UHGV-1552411_4	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-1552411_4	PF21277	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1552411_5	568816.Acin_1951	48.9	0.000000396	N/A	N/A
PHROG	UHGV-1552411_6	phrog_23091	277.6	0	N/A	unknown function
structural_annotation	UHGV-1552411_6	PF05105,NF035928	N/A	N/A	N/A	N/A
UniRef90	UHGV-1552411_8	UniRef90_UPI001D087ED4	1311.0	0	glycoside hydrolase family 55 protein	N/A
Pfam	UHGV-1552411_8	PF12708	N/A	N/A	Pectate lyase superfamily protein	Pectate_lyase_3
COG	UHGV-1552411_8	COG5434	N/A	N/A	Polygalacturonase	N/A
structural_annotation	UHGV-1552411_8	PF05096,PF03906,MF_03008,TIGR03866,COG3204	N/A	N/A	N/A	N/A
KOfam	UHGV-1552411_9	K20478	95.8	1.3e-29	GOLGB1; golgin subfamily B member 1	N/A
PHROG	UHGV-1552411_9	phrog_9880	236.4	0	N/A	unknown function
UniRef90	UHGV-1552411_9	UniRef90_D1YMD8	4261.0	0	MuF_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1552411_9	699218.HMPREF0889_0277	452.0	0	N/A	N/A
Pfam	UHGV-1552411_9	PF18819	N/A	N/A	Phage MuF-C-terminal domain	MuF_C
PHROG	UHGV-1552411_10	phrog_10475	49.8	0.000000000000042	endolysin	lysis
UniRef90	UHGV-1552411_10	UniRef90_UPI001962220E	1397.0	0	transglycosylase SLT domain-containing protein	N/A
eggNOG-mapper	UHGV-1552411_10	1123288.SOV_2c10740	129.0	4.94e-28	N/A	N/A
Pfam	UHGV-1552411_10	PF01464	N/A	N/A	Transglycosylase SLT domain	SLT
structural_annotation	UHGV-1552411_10	PF01464,COG0741	N/A	N/A	N/A	N/A
PHROG	UHGV-1552411_11	phrog_418	62.8	6.1e-18	internal virion protein	head and packaging
eggNOG-mapper	UHGV-1552411_11	1401067.HMPREF0872_06765	183.0	0	N/A	N/A
structural_annotation	UHGV-1552411_11	PF05384,TIGR01010,COG3524	N/A	N/A	N/A	N/A
PHROG	UHGV-1552411_12	phrog_308	101.1	9.6e-30	internal virion protein	head and packaging
UniRef90	UHGV-1552411_12	UniRef90_UPI001D08FF44	176.0	0	N/A	N/A
structural_annotation	UHGV-1552411_12	PF11039,MF_02210,NF000165,COG1247	N/A	N/A	N/A	N/A
PHROG	UHGV-1552411_13	phrog_376	726.6	0	tail protein	tail
UniRef90	UHGV-1552411_13	UniRef90_A0A0U1KV93	358.0	0	N/A	N/A
eggNOG-mapper	UHGV-1552411_13	1401067.HMPREF0872_06775	684.0	0	N/A	N/A
structural_annotation	UHGV-1552411_13	PF11134,MF_00923,TIGR03300,COG2706	N/A	N/A	N/A	N/A
PHROG	UHGV-1552411_14	phrog_394	177.7	0	tail protein	tail
UniRef90	UHGV-1552411_14	UniRef90_A0A0U1KW64	100.0	6.35e-23	N/A	N/A
eggNOG-mapper	UHGV-1552411_14	1401067.HMPREF0872_06780	199.0	0	N/A	N/A
structural_annotation	UHGV-1552411_14	PF17212	N/A	N/A	N/A	N/A
PHROG	UHGV-1552411_16	phrog_427	48.9	0.00000000000011	N/A	unknown function
structural_annotation	UHGV-1552411_16	PF21190	N/A	N/A	N/A	N/A
PHROG	UHGV-1552411_17	phrog_212	223.1	0	major head protein	head and packaging
UniRef90	UHGV-1552411_17	UniRef90_A0A239Z8I8	505.0	0	Phage capsid family	N/A
eggNOG-mapper	UHGV-1552411_17	1401067.HMPREF0872_06795	365.0	0	N/A	N/A
Pfam	UHGV-1552411_17	PF20911	N/A	N/A	Major capsid protein GP7	GP7
structural_annotation	UHGV-1552411_17	PF20911,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1552411_18	phrog_458	138.4	6.79994e-41	protease	other
UniRef90	UHGV-1552411_18	UniRef90_A0A7X8Z540	58.2	0.000000702	Protease	N/A
eggNOG-mapper	UHGV-1552411_18	1401067.HMPREF0872_06800	112.0	3.85e-28	N/A	N/A
PHROG	UHGV-1552411_19	phrog_528	88.7	2.9e-26	N/A	unknown function
UniRef90	UHGV-1552411_19	UniRef90_A0A8E8TUT9	52.8	0.000000918	Endopeptidase	N/A
eggNOG-mapper	UHGV-1552411_19	1401067.HMPREF0872_06805	91.3	1.3e-22	N/A	N/A
PHROG	UHGV-1552411_20	phrog_332	487.7	0	head-tail adaptor	connector
UniRef90	UHGV-1552411_20	UniRef90_A0A239Z979	785.0	0	Bacteriophage head to tail connecting protein	N/A
eggNOG-mapper	UHGV-1552411_20	1401067.HMPREF0872_06810	608.0	0	Bacteriophage head to tail connecting protein	N/A
Pfam	UHGV-1552411_20	PF12236	N/A	N/A	Bacteriophage head to tail connecting protein	Head-tail_con
structural_annotation	UHGV-1552411_20	PF12236,MF_04120,TIGR01538,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1552411_22	phrog_5902	247.1	0	N/A	unknown function
UniRef90	UHGV-1552411_22	UniRef90_UPI0018C4A0E6	580.0	0	terminase	N/A
eggNOG-mapper	UHGV-1552411_22	1200557.JHWV01000001_gene277	575.0	0	Terminase RNaseH-like domain	N/A
COG	UHGV-1552411_22	COG0507	N/A	N/A	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-1552411_22	PF03237,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-1552411_23	K07474	130.8	1.9e-38	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-1552411_23	phrog_51	136.1	1.7e-40	terminase small subunit	head and packaging
UniRef90	UHGV-1552411_23	UniRef90_A0A496PEP2	248.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-1552411_23	1235800.C819_00494	120.0	9.34e-33	Terminase small subunit	N/A
Pfam	UHGV-1552411_23	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-1552411_23	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1552411_23	PF03592,COG3728	N/A	N/A	N/A	N/A
PHROG	UHGV-1552411_28	phrog_36	44.4	0.0000000000029	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-1552411_28	706434.HMPREF9429_00383	54.7	0.000000289	N/A	N/A
structural_annotation	UHGV-1552411_28	PF07374	N/A	N/A	N/A	N/A
PHROG	UHGV-1552411_30	phrog_21026	118.1	4.3e-35	N/A	unknown function
KOfam	UHGV-1552411_33	K01520	155.3	0	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-1552411_33	phrog_135	154.2	0	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1552411_33	UniRef90_UPI001D0616FF	256.0	0	dUTP diphosphatase	N/A
eggNOG-mapper	UHGV-1552411_33	36080.S2JYN8	125.0	3.33e-35	dUTPase	N/A
Pfam	UHGV-1552411_33	PF00692	N/A	N/A	dUTPase	dUTPase
NCBIFam	UHGV-1552411_33	TIGR00576.1	N/A	N/A	dUTP diphosphatase	N/A
COG	UHGV-1552411_33	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-1552411_33	PF00692,MF_00116,NF001862,COG0756	N/A	N/A	N/A	N/A
PHROG	UHGV-1552411_34	phrog_244	78.5	1e-22	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1552411_34	UniRef90_A0A841R0Q1	117.0	6.82e-32	Holliday junction resolvase	N/A
eggNOG-mapper	UHGV-1552411_34	1200557.JHWV01000001_gene280	125.0	1.95e-35	N/A	N/A
structural_annotation	UHGV-1552411_34	PF01870,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
PHROG	UHGV-1552411_35	phrog_2776	49.6	0.000000000000045	N/A	unknown function
UniRef90	UHGV-1552411_35	UniRef90_A0A2S7ZCT0	163.0	0	DNA repair protein MmcB-related protein	N/A
structural_annotation	UHGV-1552411_35	PF06319,NF033832,COG5321	N/A	N/A	N/A	N/A
PHROG	UHGV-1552411_36	phrog_2882	260.3	0	DNA methyltransferase	other
UniRef90	UHGV-1552411_36	UniRef90_UPI000E75FDEB	362.0	0	DNA methyltransferase	N/A
eggNOG-mapper	UHGV-1552411_36	565653.EGBG_01954	241.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
Pfam	UHGV-1552411_36	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-1552411_36	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
PHROG	UHGV-1552411_37	phrog_954	230.9	0	DNA methyltransferase	other
UniRef90	UHGV-1552411_37	UniRef90_A0A239ZA70	300.0	0	Methyltransferase domain	N/A
eggNOG-mapper	UHGV-1552411_37	1401067.HMPREF0872_03435	267.0	0	methyltransferase	N/A
PADLOC	UHGV-1552411_37	MTase_II_00074	230.6	0	Type II methyltransferase	RM
Pfam	UHGV-1552411_37	PF08241	N/A	N/A	Methyltransferase domain	Methyltransf_11
COG	UHGV-1552411_37	COG0500	N/A	N/A	SAM-dependent methyltransferase	N/A
structural_annotation	UHGV-1552411_37	PF01170,MF_01057,TIGR00446,COG4123	N/A	N/A	N/A	N/A
PHROG	UHGV-1552411_38	phrog_1672	53.0	0.000000000000005	N/A	unknown function
UniRef90	UHGV-1552411_38	UniRef90_F5L204	83.6	4.86e-18	Conserved domain protein	N/A
KOfam	UHGV-1552411_39	K03111	144.3	1.19951e-42	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1552411_39	phrog_44	125.1	5.8e-37	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1552411_39	UniRef90_UPI0019613F2D	234.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1552411_39	936589.HMPREF1521_1228	179.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1552411_39	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1552411_39	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1552411_39	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1552411_39	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1552411_39	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1552411_41	phrog_9804	75.7	6.6e-22	N/A	unknown function
structural_annotation	UHGV-1552411_41	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-1552411_42	phrog_5968	162.1	0	replisome organizer	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1552411_42	UniRef90_A0A2S7ZGS0	436.0	0	Replisome organizer	N/A
eggNOG-mapper	UHGV-1552411_42	411473.RUMCAL_00873	189.0	0	Phage replisome organizer, N-terminal domain protein	N/A
Pfam	UHGV-1552411_42	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
NCBIFam	UHGV-1552411_42	TIGR01714.1	N/A	N/A	phage replisome organizer, putative, N-terminal region	N/A
COG	UHGV-1552411_42	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1552411_42	PF09681,TIGR01714,COG0640	N/A	N/A	N/A	N/A
KOfam	UHGV-1552411_44	K07451	47.7	0.00000000000031	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-1552411_44	phrog_7785	42.6	0.000000000011	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1552411_44	UniRef90_UPI001D06B2BA	203.0	0	HNH endonuclease	N/A
Pfam	UHGV-1552411_44	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1552411_44	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-1552411_44	PF01844,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-1552411_45	phrog_72	73.6	2.8e-21	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1552411_45	1507.HMPREF0262_00432	89.4	7.01e-20	N/A	N/A
PHROG	UHGV-1552411_46	phrog_7838	109.9	2e-32	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1552411_46	UniRef90_UPI001D07B780	383.0	0	RAD52 family DNA repair protein	N/A
eggNOG-mapper	UHGV-1552411_46	742767.HMPREF9456_02052	131.0	2.46e-35	N/A	N/A
structural_annotation	UHGV-1552411_46	PF06420,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-1552411_47	phrog_674	89.9	1.7e-26	N/A	unknown function
UniRef90	UHGV-1552411_47	UniRef90_UPI001D090BA8	492.0	0	N/A	N/A
eggNOG-mapper	UHGV-1552411_47	1415775.U729_15	84.0	6.93e-16	N/A	N/A
Pfam	UHGV-1552411_47	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-1552411_47	PF07083	N/A	N/A	N/A	N/A
PHROG	UHGV-1552411_50	phrog_7735	104.3	6.7e-31	excisionase	integration and excision
UniRef90	UHGV-1552411_50	UniRef90_UPI00195FD229	188.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1552411_50	195103.CPF_0933	59.7	0.000000000272	N/A	N/A
Pfam	UHGV-1552411_50	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
structural_annotation	UHGV-1552411_50	PF12728,NF033787,COG3311	N/A	N/A	N/A	N/A
UniRef90	UHGV-1552411_52	UniRef90_A0A2C6BK51	64.3	0.00000000000507	Toxin-antitoxin system, antitoxin component, Xre family protein	N/A
eggNOG-mapper	UHGV-1552411_52	887929.HMP0721_1290	57.4	0.000000000521	Helix-turn-helix domain of resolvase	N/A
structural_annotation	UHGV-1552411_52	PF05339,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-1552411_53	K22299	53.6	0.0000000000000054	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-1552411_53	phrog_8	51.0	0.000000000000035	transcriptional regulator	transcription regulation
UniRef90	UHGV-1552411_53	UniRef90_A0A239ZAB0	163.0	0	Helix-turn-helix	N/A
eggNOG-mapper	UHGV-1552411_53	706434.HMPREF9429_00594	129.0	6.07e-37	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1552411_53	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1552411_53	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1552411_53	PF01381,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-1552411_55	phrog_20936	137.8	2.20004e-41	N/A	unknown function
UniRef90	UHGV-1552411_55	UniRef90_D1YMA2	180.0	0	Peptidase_M78 domain-containing protein	N/A
eggNOG-mapper	UHGV-1552411_55	706434.HMPREF9429_00182	60.8	0.0000000000491	N/A	N/A
Pfam	UHGV-1552411_55	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
structural_annotation	UHGV-1552411_55	PF06114	N/A	N/A	N/A	N/A
KOfam	UHGV-1552411_56	K14059	219.1	0	int; integrase	N/A
PHROG	UHGV-1552411_56	phrog_1	206.9	0	integrase	integration and excision
UniRef90	UHGV-1552411_56	UniRef90_A0A660M6S9	413.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-1552411_56	1401067.HMPREF0872_00475	244.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1552411_56	PF14657	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_4
Pfam	UHGV-1552411_56	PF02899	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
Pfam	UHGV-1552411_56	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1552411_56	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1552411_56	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-1552411_57	UniRef90_A0A2S7Z2L1	146.0	1.09021e-42	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-1552411_57	479436.Vpar_0995	208.0	0	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1552411	Yes	42,402	37	100	1
UHGV-0082561	No	10,359	38	25	1
UHGV-1625292	No	10,359	38	25	1