vOTU vOTU-081904

vOTU: vOTU-081904

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-081904
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00373 → vGENUS-00237 → vSUBGEN-19524 → vOTU-081904
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → SFJ001
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0025399
Biosample ID	SAMEA4766164
Genome length (bp)	42,514 bps
CheckV completeness	96.04% (High-quality)
CDS count	66
CDS density	92.67%
tRNA count	3
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → SFJ001	Total connections	81	Host agreement	80.25
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae	Total connections	2	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 96.04)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0025399_1	phrog_4433	146.9	1.59748e-43	N/A	unknown function
UniRef90	UHGV-0025399_1	UniRef90_A0A6M5C839	107.0	1e-26	Putative ADP-ribosyltransferase	N/A
eggNOG-mapper	UHGV-0025399_1	645991.Sgly_0315	117.0	7.76e-30	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0025399_1	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
eggNOG-mapper	UHGV-0025399_3	596152.DesU5LDRAFT_1910	82.8	1.33e-16	N/A	N/A
structural_annotation	UHGV-0025399_3	PF03787,TIGR02581,COG1604	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0025399_4	PF10743,NF033787	N/A	N/A	N/A	N/A
KOfam	UHGV-0025399_6	K07741	82.0	1.7e-23	antB; anti-repressor protein	N/A
PHROG	UHGV-0025399_6	phrog_130	246.2	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0025399_6	UniRef90_A0A1V4IXR9	221.0	0	Phage antirepressor protein KilAC domain protein	N/A
eggNOG-mapper	UHGV-0025399_6	1347392.CCEZ01000015_gene2859	221.0	0	Phage antirepressor protein	N/A
Pfam	UHGV-0025399_6	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0025399_6	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0025399_6	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0025399_6	PF03374,PF02498,TIGR02681,COG3617,COG3645	N/A	N/A	N/A	N/A
UniRef90	UHGV-0025399_7	UniRef90_R5J287	73.9	9.69e-16	Conserved domain protein	N/A
Pfam	UHGV-0025399_7	PF05339	N/A	N/A	N/A	DUF739
COG	UHGV-0025399_7	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-0025399_7	PF05339,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0025399_8	K22299	54.6	0.0000000000000025	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0025399_8	phrog_8	48.4	0.0000000000002	transcriptional regulator	transcription regulation
UniRef90	UHGV-0025399_8	UniRef90_UPI0005E915F7	80.1	1.36e-16	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0025399_8	457421.CBFG_03225	75.9	7.45e-16	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-0025399_8	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0025399_8	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0025399_8	PF13560,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0025399_10	1284352.AOIG01000003_gene1052	53.5	0.0000014	N/A	N/A
structural_annotation	UHGV-0025399_10	PF10358	N/A	N/A	N/A	N/A
Pfam	UHGV-0025399_11	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0025399_11	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0025399_11	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0025399_12	K14059	89.4	6.5e-26	int; integrase	N/A
PHROG	UHGV-0025399_12	phrog_1	95.7	6.7e-28	integrase	integration and excision
UniRef90	UHGV-0025399_12	UniRef90_UPI001897E1C8	152.0	8.65e-39	site-specific integrase	N/A
eggNOG-mapper	UHGV-0025399_12	411471.SUBVAR_07390	94.4	4.67e-19	Phage integrase family	N/A
Pfam	UHGV-0025399_12	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0025399_12	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0025399_12	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
UniRef90	UHGV-0025399_13	UniRef90_A0A4R1R5G7	77.0	6.51e-18	Anaerobic ribonucleoside-triphosphate reductase-like protein	N/A
eggNOG-mapper	UHGV-0025399_13	658088.HMPREF0987_00997	77.8	5.41e-19	Anaerobic ribonucleoside-triphosphate reductase	N/A
Pfam	UHGV-0025399_13	PF13597	N/A	N/A	Anaerobic ribonucleoside-triphosphate reductase	NRDD
COG	UHGV-0025399_13	COG1328	N/A	N/A	Anaerobic ribonucleoside-triphosphate reductase	N/A
eggNOG-mapper	UHGV-0025399_14	1408437.JNJN01000060_gene452	252.0	0	heme binding	N/A
COG	UHGV-0025399_14	COG0503	N/A	N/A	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	N/A
structural_annotation	UHGV-0025399_16	PF00210,MF_01441,NF011597,COG1528	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0025399_19	PF07638,MF_00674,TIGR02954,COG1846	N/A	N/A	N/A	N/A
PHROG	UHGV-0025399_20	phrog_1129	79.9	2e-23	holin	lysis
UniRef90	UHGV-0025399_20	UniRef90_UPI001F43F0BF	133.0	6.38e-39	phage holin family protein	N/A
eggNOG-mapper	UHGV-0025399_20	1256908.HMPREF0373_00463	125.0	1.35e-36	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0025399_20	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0025399_20	PF06946	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0025399_21	97138.C820_00248	60.1	0.0000000000723	N/A	N/A
KOfam	UHGV-0025399_22	K07273	208.0	0	acm; lysozyme	N/A
PHROG	UHGV-0025399_22	phrog_291	159.0	0	endolysin	lysis
UniRef90	UHGV-0025399_22	UniRef90_UPI00164A97A0	200.0	0	glycoside hydrolase family 25 protein	N/A
eggNOG-mapper	UHGV-0025399_22	537013.CLOSTMETH_03464	167.0	0	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0025399_22	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0025399_22	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0025399_22	PF01183,PF05194,COG3757	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0025399_24	411483.FAEPRAA2165_00757	151.0	1.3e-40	N/A	N/A
eggNOG-mapper	UHGV-0025399_25	665956.HMPREF1032_03918	112.0	5.08e-25	prophage protein Bartonella henselae str. Houston-1 gi 49237922 emb CAF27125.1	N/A
PHROG	UHGV-0025399_26	phrog_13046	42.2	0.0000000000031	N/A	unknown function
eggNOG-mapper	UHGV-0025399_26	693746.OBV_23880	105.0	1.46e-25	N/A	N/A
structural_annotation	UHGV-0025399_26	PF20387	N/A	N/A	N/A	N/A
PHROG	UHGV-0025399_27	phrog_156	233.1	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0025399_27	693746.OBV_23930	458.0	0	N/A	N/A
structural_annotation	UHGV-0025399_27	PF12236,MF_04120,TIGR01542,COG5518	N/A	N/A	N/A	N/A
PHROG	UHGV-0025399_28	phrog_371	139.6	1.40004e-41	major head protein	head and packaging
UniRef90	UHGV-0025399_28	UniRef90_A0A1Y4TDW7	474.0	0	Mu-like_gpT domain-containing protein	N/A
eggNOG-mapper	UHGV-0025399_28	1226322.HMPREF1545_03848	285.0	0	N/A	N/A
Pfam	UHGV-0025399_28	PF10124	N/A	N/A	Mu-like prophage major head subunit gpT	Mu-like_gpT
structural_annotation	UHGV-0025399_28	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0025399_29	phrog_24113	50.9	0.000000000000022	N/A	unknown function
structural_annotation	UHGV-0025399_29	PF11133,COG5471	N/A	N/A	N/A	N/A
PHROG	UHGV-0025399_30	phrog_35275	60.6	1.1e-17	N/A	unknown function
eggNOG-mapper	UHGV-0025399_30	1226322.HMPREF1545_03846	70.5	0.0000000000384	N/A	N/A
PHROG	UHGV-0025399_33	phrog_3287	175.1	0	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0025399_33	665956.HMPREF1032_03917	676.0	0	N/A	N/A
structural_annotation	UHGV-0025399_33	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
KOfam	UHGV-0025399_34	K21523	46.0	0.00000000000022	gp17; terminase, large subunit [EC:3.1.-.-]	N/A
PHROG	UHGV-0025399_34	phrog_2	100.0	3.8e-29	terminase large subunit	head and packaging
UniRef90	UHGV-0025399_34	UniRef90_UPI001F401ABC	657.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-0025399_34	316274.Haur_1384	145.0	2.73e-35	N/A	N/A
Pfam	UHGV-0025399_34	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0025399_34	COG4373	N/A	N/A	Mu-like prophage FluMu protein gp28	N/A
structural_annotation	UHGV-0025399_34	PF03354,PF17289,MF_04146,TIGR01547,COG4373	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0025399_37	PF03869	N/A	N/A	N/A	N/A
PHROG	UHGV-0025399_41	phrog_19458	281.7	0	primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0025399_41	UniRef90_A0A1V5KAU2	224.0	0	DarA_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0025399_41	657322.FPR_26770	330.0	0	N/A	N/A
COG	UHGV-0025399_41	COG4227	N/A	N/A	Antirestriction protein ArdC	N/A
eggNOG-mapper	UHGV-0025399_46	1235798.C817_04600	65.1	0.00000000000313	N/A	N/A
structural_annotation	UHGV-0025399_46	PF13560,NF040522	N/A	N/A	N/A	N/A
PHROG	UHGV-0025399_47	phrog_36	72.5	7.8e-21	transcriptional regulator	transcription regulation
Pfam	UHGV-0025399_47	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-0025399_47	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0025399_47	PF04545,MF_00674,NF009180,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-0025399_50	phrog_6721	290.3	0	N/A	unknown function
eggNOG-mapper	UHGV-0025399_50	478749.BRYFOR_08540	263.0	0	N/A	N/A
structural_annotation	UHGV-0025399_50	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
PHROG	UHGV-0025399_52	phrog_22543	43.7	0.0000000000036	N/A	unknown function
PHROG	UHGV-0025399_54	phrog_236	81.6	1.6e-23	nucleotide kinase	other
UniRef90	UHGV-0025399_54	UniRef90_UPI000D110E3A	100.0	3.58e-25	N/A	N/A
eggNOG-mapper	UHGV-0025399_54	411473.RUMCAL_00920	81.3	2.53e-18	N/A	N/A
Pfam	UHGV-0025399_54	PF11753	N/A	N/A	N/A	DUF3310
structural_annotation	UHGV-0025399_54	PF11753	N/A	N/A	N/A	N/A
KOfam	UHGV-0025399_55	K01160	46.3	0.0000000000011	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0025399_55	phrog_1682	69.9	4.2e-20	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0025399_55	UniRef90_R7FGZ0	113.0	3.25e-30	Gp63	N/A
eggNOG-mapper	UHGV-0025399_55	220668.lp_2433	93.2	7.38e-23	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
COG	UHGV-0025399_55	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0025399_55	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0025399_56	K02314	229.7	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0025399_56	phrog_19	219.3	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0025399_56	UniRef90_UPI001F1C052D	436.0	0	replicative DNA helicase	N/A
eggNOG-mapper	UHGV-0025399_56	1203606.HMPREF1526_01325	162.0	8.78614e-43	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-0025399_56	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0025399_56	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0025399_56	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0025399_56	PF03796,PF00772,MF_04155,NF005240,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-0025399_57	phrog_270	111.9	8.2e-33	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0025399_57	UniRef90_UPI000497F8A6	146.0	3.29e-40	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0025399_57	1232446.BAIE02000002_gene816	146.0	5.51999e-41	N/A	N/A
structural_annotation	UHGV-0025399_57	PF05584,MF_01819,TIGR01610,COG3355	N/A	N/A	N/A	N/A
KOfam	UHGV-0025399_58	K03111	116.4	4.1e-34	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0025399_58	phrog_44	118.3	7.4e-35	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0025399_58	UniRef90_UPI001F420DC7	133.0	1.9e-37	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0025399_58	748224.HMPREF9436_03359	124.0	2.63e-34	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0025399_58	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0025399_58	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0025399_58	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0025399_58	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0025399_58	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0025399_59	phrog_7566	77.4	1.4e-22	N/A	unknown function
UniRef90	UHGV-0025399_59	UniRef90_A0A8D9UHC0	77.8	1.72e-16	Recombination enhancement function protein nuclease	N/A
eggNOG-mapper	UHGV-0025399_59	693746.OBV_25470	84.7	9.56e-20	N/A	N/A
PHROG	UHGV-0025399_60	phrog_72	59.4	5.4e-17	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0025399_60	UniRef90_UPI000C7BF263	169.0	0	recombination protein NinB	N/A
eggNOG-mapper	UHGV-0025399_60	445972.ANACOL_01825	141.0	1.41e-40	N/A	N/A
structural_annotation	UHGV-0025399_60	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-0025399_61	phrog_7838	136.1	3.20001e-40	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0025399_61	UniRef90_A0A8D9UGW3	207.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-0025399_61	742767.HMPREF9456_02397	167.0	0	N/A	N/A
structural_annotation	UHGV-0025399_61	PF04098,TIGR00607,COG4380	N/A	N/A	N/A	N/A
PHROG	UHGV-0025399_62	phrog_253	109.8	2.5e-32	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0025399_62	UniRef90_A0A843H617	166.0	0	Siphovirus Gp157 family protein	N/A
eggNOG-mapper	UHGV-0025399_62	748224.HMPREF9436_03356	163.0	0	Siphovirus Gp157	N/A
Pfam	UHGV-0025399_62	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0025399_62	PF05565	N/A	N/A	N/A	N/A
PHROG	UHGV-0025399_66	phrog_18079	54.8	0.0000000000000016	N/A	unknown function
eggNOG-mapper	UHGV-0025399_66	645991.Sgly_0315	89.7	1.66e-19	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0025399_66	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0025399_66	NF007410	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0025399	Yes	42,514	56	96	1