vOTU vOTU-081925

vOTU: vOTU-081925

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-081925
Number of genomes	6
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00040 → vSUBFAM-01435 → vGENUS-01641 → vSUBGEN-26994 → vOTU-081925
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Flavonifractor → Flavonifractor plautii
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1472071
Biosample ID	N/A
Genome length (bp)	39,902 bps
CheckV completeness	99.90% (High-quality)
CDS count	62
CDS density	88.72%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Flavonifractor → Flavonifractor plautii	Total connections	396	Host agreement	96.46
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Flavonifractor → Flavonifractor plautii	Total connections	94	Host agreement	95.74

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-1472071_1	1519439.JPJG01000011_gene57	139.0	3.72e-40	N/A	N/A
structural_annotation	UHGV-1472071_1	PF11650	N/A	N/A	N/A	N/A
UniRef90	UHGV-1472071_2	UniRef90_A0A4D7ASB8	608.0	0	N/A	N/A
eggNOG-mapper	UHGV-1472071_2	1519439.JPJG01000011_gene54	582.0	0	N/A	N/A
structural_annotation	UHGV-1472071_2	PF11134,MF_03027,NF010237,TIGR03511,COG2319	N/A	N/A	N/A	N/A
PHROG	UHGV-1472071_3	phrog_863	46.6	0.00000000000076	tail fiber assembly	tail
eggNOG-mapper	UHGV-1472071_3	1232449.BAHV02000016_gene1815	94.4	4.25e-17	N/A	N/A
PHROG	UHGV-1472071_4	phrog_27545	241.8	0	N/A	unknown function
UniRef90	UHGV-1472071_4	UniRef90_R6ELD6	60.8	0.0000000204	Glycosyl hydrolase family 18 family protein	N/A
eggNOG-mapper	UHGV-1472071_4	742738.HMPREF9460_00363	268.0	0	N/A	N/A
PHROG	UHGV-1472071_6	phrog_22773	199.2	0	N/A	unknown function
UniRef90	UHGV-1472071_6	UniRef90_G9YP62	179.0	0	Toxin-antitoxin system, toxin component domain protein	N/A
eggNOG-mapper	UHGV-1472071_6	742738.HMPREF9460_03965	177.0	0	N/A	N/A
PHROG	UHGV-1472071_7	phrog_2310	64.2	1e-18	N/A	unknown function
KOfam	UHGV-1472071_8	K01448	174.1	0	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1472071_8	phrog_18955	394.1	0	N/A	unknown function
UniRef90	UHGV-1472071_8	UniRef90_A0A1C7FQI4	808.0	0	MurNAc-LAA domain-containing protein	N/A
eggNOG-mapper	UHGV-1472071_8	1226322.HMPREF1545_00782	263.0	0	N/A	N/A
Pfam	UHGV-1472071_8	PF09992	N/A	N/A	Phosphodiester glycosidase	NAGPA
Pfam	UHGV-1472071_8	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-1472071_8	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-1472071_8	PF01520,PF09992,MF_00417,TIGR02883,COG0860,COG4632	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1472071_9	693746.OBV_01600	99.8	1.13e-19	N/A	N/A
UniRef90	UHGV-1472071_10	UniRef90_U2AS96	2832.0	0	MuF_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1472071_10	1408437.JNJN01000060_gene452	660.0	0	heme binding	N/A
Pfam	UHGV-1472071_10	PF18819	N/A	N/A	Phage MuF-C-terminal domain	MuF_C
COG	UHGV-1472071_10	COG0503	N/A	N/A	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	N/A
PHROG	UHGV-1472071_11	phrog_13256	82.0	3.6e-24	N/A	unknown function
eggNOG-mapper	UHGV-1472071_11	1226322.HMPREF1545_00132	76.3	1.31e-17	N/A	N/A
PHROG	UHGV-1472071_12	phrog_937	43.0	0.000000000004	hemolysin	other
eggNOG-mapper	UHGV-1472071_12	445972.ANACOL_01873	63.2	0.0000000000195	N/A	N/A
KOfam	UHGV-1472071_13	K03091	70.4	3.6e-20	sigH; RNA polymerase sporulation-specific sigma factor	N/A
UniRef90	UHGV-1472071_13	UniRef90_A0A174RNL1	324.0	0	RNA polymerase sigma factor SigS	N/A
Pfam	UHGV-1472071_13	PF04542	N/A	N/A	Sigma-70 region 2	Sigma70_r2
Pfam	UHGV-1472071_13	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
NCBIFam	UHGV-1472071_13	TIGR02937.1	N/A	N/A	sigma-70 family RNA polymerase sigma factor	N/A
COG	UHGV-1472071_13	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-1472071_13	PF04542,PF08281,MF_00962,NF006158,COG1191	N/A	N/A	N/A	N/A
PHROG	UHGV-1472071_14	phrog_924	50.5	0.000000000000041	N/A	unknown function
UniRef90	UHGV-1472071_14	UniRef90_U2BA60	135.0	2.51001e-40	N/A	N/A
Pfam	UHGV-1472071_14	PF04448	N/A	N/A	N/A	DUF551
COG	UHGV-1472071_14	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-1472071_14	NF041588	N/A	N/A	N/A	N/A
PHROG	UHGV-1472071_15	phrog_8684	55.8	5.5e-16	N/A	unknown function
UniRef90	UHGV-1472071_15	UniRef90_A0A1C7FQJ0	147.0	1.22053e-42	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-1472071_15	457412.RSAG_01162	57.4	0.0000000432	YopX protein	N/A
structural_annotation	UHGV-1472071_15	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-1472071_18	phrog_22543	106.9	7.1e-33	N/A	unknown function
PHROG	UHGV-1472071_20	phrog_38832	41.8	0.00000000000011	N/A	unknown function
eggNOG-mapper	UHGV-1472071_20	665956.HMPREF1032_03087	102.0	2.42e-26	N/A	N/A
structural_annotation	UHGV-1472071_23	NF000937	N/A	N/A	N/A	N/A
PHROG	UHGV-1472071_24	phrog_25732	131.2	2.5e-39	N/A	unknown function
PHROG	UHGV-1472071_25	phrog_10714	59.8	3.7e-17	N/A	unknown function
eggNOG-mapper	UHGV-1472071_25	742738.HMPREF9460_04055	103.0	2.39e-27	N/A	N/A
Pfam	UHGV-1472071_25	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
UniRef90	UHGV-1472071_26	UniRef90_UPI0018AC14ED	52.0	0.000000289	Lar family restriction alleviation protein	N/A
eggNOG-mapper	UHGV-1472071_26	742738.HMPREF9460_04054	54.3	0.00000000878	Restriction alleviation protein Lar	N/A
PHROG	UHGV-1472071_27	phrog_757	60.0	3.6e-17	DNA methyltransferase	other
eggNOG-mapper	UHGV-1472071_27	742733.HMPREF9469_01835	107.0	7.36e-28	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-1472071_27	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
PHROG	UHGV-1472071_28	phrog_757	86.9	2.2e-25	DNA methyltransferase	other
UniRef90	UHGV-1472071_28	UniRef90_UPI000C082058	137.0	2.38e-39	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-1472071_28	742733.HMPREF9469_01835	146.0	6.01157e-43	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-1472071_28	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
UniRef90	UHGV-1472071_29	UniRef90_A0A4R2M1E0	124.0	6.76e-35	Homeodomain-like domain-containing protein	N/A
structural_annotation	UHGV-1472071_29	PF04936,NF033558	N/A	N/A	N/A	N/A
PHROG	UHGV-1472071_31	phrog_1770	109.9	2.1e-32	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1472071_31	UniRef90_A0A1Z9DRQ5	98.2	3.42e-23	Crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1472071_31	1002672.SAR11G3_01424	94.0	2.7e-22	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group	N/A
COG	UHGV-1472071_31	COG0817	N/A	N/A	Holliday junction resolvasome RuvABC endonuclease subunit RuvC	N/A
structural_annotation	UHGV-1472071_31	PF16921,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1472071_32	PF11417	N/A	N/A	N/A	N/A
KOfam	UHGV-1472071_33	K03111	149.6	2.8026e-44	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1472071_33	phrog_44	146.0	2.00386e-43	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1472071_33	UniRef90_A0A174RD30	275.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1472071_33	742738.HMPREF9460_00833	218.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-1472071_33	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1472071_33	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1472071_33	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1472071_33	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1472071_33	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1472071_34	phrog_561	162.5	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1472071_34	UniRef90_A0A174RC35	447.0	0	RecT family	N/A
eggNOG-mapper	UHGV-1472071_34	1215092.PA6_009_00610	174.0	0	N/A	N/A
Pfam	UHGV-1472071_34	PF03837	N/A	N/A	RecT family	RecT
structural_annotation	UHGV-1472071_34	PF03837,TIGR01913,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-1472071_35	phrog_298	91.4	2.4e-27	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1472071_35	UniRef90_UPI001C97FE83	93.2	3.05e-20	PD-(D/E)XK nuclease family protein	N/A
eggNOG-mapper	UHGV-1472071_35	1218075.BAYA01000003_gene606	113.0	1.15e-28	N/A	N/A
structural_annotation	UHGV-1472071_35	PF12705,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
PHROG	UHGV-1472071_37	phrog_1123	84.5	8.1e-25	N/A	unknown function
UniRef90	UHGV-1472071_37	UniRef90_UPI001EDDCAAF	161.0	0	DNA gyrase	N/A
eggNOG-mapper	UHGV-1472071_37	411483.FAEPRAA2165_01885	63.5	0.0000000000061	N/A	N/A
structural_annotation	UHGV-1472071_37	PF04703,MF_01804,TIGR00373,COG1695	N/A	N/A	N/A	N/A
PHROG	UHGV-1472071_38	phrog_30822	61.6	1.6e-17	N/A	unknown function
UniRef90	UHGV-1472071_38	UniRef90_UPI00164AA766	93.6	2.14e-22	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-1472071_38	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1472071_38	PF01381,PF13613,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-1472071_43	UniRef90_UPI0018975A18	144.0	8.12753e-44	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1472071_43	428125.CLOLEP_02737	92.4	6.17e-24	N/A	N/A
structural_annotation	UHGV-1472071_43	TIGR03070	N/A	N/A	N/A	N/A
PHROG	UHGV-1472071_44	phrog_8	54.6	0.0000000000000025	transcriptional regulator	transcription regulation
UniRef90	UHGV-1472071_44	UniRef90_UPI00189ABAC3	252.0	0	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-1472071_44	428125.CLOLEP_02738	69.7	0.000000000000111	SMART helix-turn-helix domain protein	N/A
Pfam	UHGV-1472071_44	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-1472071_44	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
PHROG	UHGV-1472071_45	phrog_1914	106.4	2.9e-31	N/A	unknown function
UniRef90	UHGV-1472071_45	UniRef90_A0A3D3T8S3	111.0	1.25e-26	Peptidase_M78 domain-containing protein	N/A
eggNOG-mapper	UHGV-1472071_45	665956.HMPREF1032_03592	65.5	0.000000000192	N/A	N/A
Pfam	UHGV-1472071_45	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-1472071_45	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-1472071_45	PF06114,COG2856	N/A	N/A	N/A	N/A
UniRef90	UHGV-1472071_46	UniRef90_A0A174HFG9	437.0	0	Copper amine oxidase N-terminal domain	N/A
eggNOG-mapper	UHGV-1472071_46	693746.OBV_27580	79.0	0.00000000000000786	Copper amine oxidase N-terminal domain	N/A
Pfam	UHGV-1472071_46	PF07833	N/A	N/A	Copper amine oxidase N-terminal domain	Cu_amine_oxidN1
KOfam	UHGV-1472071_47	K14059	173.7	0	int; integrase	N/A
PHROG	UHGV-1472071_47	phrog_1	147.0	1.4013e-43	integrase	integration and excision
UniRef90	UHGV-1472071_47	UniRef90_A0A174HFN7	750.0	0	Site-specific tyrosine recombinase XerC	N/A
eggNOG-mapper	UHGV-1472071_47	742738.HMPREF9460_01344	214.0	0	Phage integrase family	N/A
Pfam	UHGV-1472071_47	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1472071_47	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1472071_47	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1472071_50	PF20549,COG4728	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1472071_51	411901.BACCAC_01162	49.7	0.000000174	N/A	N/A
UniRef90	UHGV-1472071_55	UniRef90_A0A1Y3R5J8	67.0	0.000000000000206	RHH_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-1472071_55	1160721.RBI_I00206	60.5	0.0000000000141	N/A	N/A
structural_annotation	UHGV-1472071_55	PF10723	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1472071_56	693746.OBV_01750	53.9	0.000000235	N/A	N/A
Pfam	UHGV-1472071_56	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
KOfam	UHGV-1472071_58	K06909	146.2	2.70451e-43	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1472071_58	phrog_979	155.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-1472071_58	UniRef90_U2BVD4	972.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-1472071_58	693746.OBV_01690	532.0	0	phage Terminase large subunit	N/A
Pfam	UHGV-1472071_58	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-1472071_58	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1472071_58	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1472071_60	phrog_156	135.9	8.30003e-41	portal protein	head and packaging
eggNOG-mapper	UHGV-1472071_60	693746.OBV_01670	589.0	0	N/A	N/A
structural_annotation	UHGV-1472071_60	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1472071_61	755731.Clo1100_2435	67.0	0.000000000546	N/A	N/A
PHROG	UHGV-1472071_62	phrog_422	143.3	1.49939e-42	major head protein	head and packaging
UniRef90	UHGV-1472071_62	UniRef90_A0A6A8VJ17	429.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-1472071_62	693746.OBV_01700	283.0	0	N/A	N/A
Pfam	UHGV-1472071_62	PF13290	N/A	N/A	Chitobiase/beta-hexosaminidase C-terminal domain	CHB_HEX_C_1
structural_annotation	UHGV-1472071_62	PF19821,PF13287,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1472071	Yes	39,902	57	100	1
UHGV-0353095	No	26,606	58	67	1
UHGV-0114929	No	20,405	57	49	1
UHGV-1758333	No	20,405	57	49	1
UHGV-1566175	No	12,109	59	31	1
UHGV-0257630	No	10,320	60	26	1