vOTU vOTU-082177

vOTU: vOTU-082177

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-082177
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00239 → vGENUS-01438 → vSUBGEN-20216 → vOTU-082177
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp003526955
Host range breadth	Species
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0069055
Biosample ID	SAMEA2737684
Genome length (bp)	30,787 bps
CheckV completeness	99.90% (High-quality)
CDS count	44
CDS density	91.50%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp003526955	Total connections	1796	Host agreement	84.52
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp003526955	Total connections	32	Host agreement	78.13

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0069055_2	phrog_18108	72.1	7.9e-21	N/A	unknown function
structural_annotation	UHGV-0069055_2	PF07443	N/A	N/A	N/A	N/A
KOfam	UHGV-0069055_3	K06400	260.4	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0069055_3	phrog_95	264.1	0	integrase	integration and excision
UniRef90	UHGV-0069055_3	UniRef90_UPI001E5635E3	257.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0069055_3	1157490.EL26_02935	197.0	0	Recombinase	N/A
Pfam	UHGV-0069055_3	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0069055_3	PF07508	N/A	N/A	Recombinase	Recombinase
COG	UHGV-0069055_3	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0069055_3	PF00239,PF07508,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-0069055_4	K06223	226.9	0	dam; DNA adenine methylase [EC:2.1.1.72]	N/A
PHROG	UHGV-0069055_4	phrog_56	187.4	0	DNA methyltransferase	other
UniRef90	UHGV-0069055_4	UniRef90_A0A1C6HHY1	426.0	0	Site-specific DNA-methyltransferase (adenine-specific)	N/A
eggNOG-mapper	UHGV-0069055_4	742733.HMPREF9469_02855	277.0	0	COG COG0338 Site-specific DNA methylase	N/A
PADLOC	UHGV-0069055_4	MTase_II_00080	130.6	1.4e-38	Type II methyltransferase	RM
Pfam	UHGV-0069055_4	PF02086	N/A	N/A	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
NCBIFam	UHGV-0069055_4	TIGR00571.1	N/A	N/A	Dam family site-specific DNA-(adenine-N6)-methyltransferase	N/A
COG	UHGV-0069055_4	COG0338	N/A	N/A	DNA-adenine methylase	N/A
structural_annotation	UHGV-0069055_4	PF02086,MF_00934,TIGR00571,COG0338	N/A	N/A	N/A	N/A
PHROG	UHGV-0069055_5	phrog_443	53.3	0.0000000000000079	holin	lysis
UniRef90	UHGV-0069055_5	UniRef90_R6MWB0	112.0	2.03e-31	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0069055_5	1469948.JPNB01000002_gene3855	83.2	1.81e-20	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0069055_5	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0069055_5	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-0069055_6	phrog_1863	45.4	0.00000000000051	N/A	unknown function
UniRef90	UHGV-0069055_6	UniRef90_UPI001E345E1F	64.7	0.00000000000814	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-0069055_6	1226322.HMPREF1545_04027	59.7	0.000000000112	N/A	N/A
KOfam	UHGV-0069055_7	K07273	189.6	0	acm; lysozyme	N/A
PHROG	UHGV-0069055_7	phrog_291	168.1	0	endolysin	lysis
UniRef90	UHGV-0069055_7	UniRef90_R6NXV5	467.0	0	Glycoside Hydrolase Family 25-like lysozyme/endolysin	N/A
eggNOG-mapper	UHGV-0069055_7	1120933.ATUY01000002_gene158	167.0	0	lysozyme activity	N/A
Pfam	UHGV-0069055_7	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0069055_7	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
structural_annotation	UHGV-0069055_7	PF01183,TIGR04303,COG3757,COG5492	N/A	N/A	N/A	N/A
PHROG	UHGV-0069055_9	phrog_1067	120.7	1.4e-35	minor head protein	head and packaging
UniRef90	UHGV-0069055_9	UniRef90_A0A348ZBV6	196.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0069055_9	1160721.RBI_I01574	121.0	2.66e-27	Prophage endopeptidase tail	N/A
Pfam	UHGV-0069055_9	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0069055_9	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0069055_9	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0069055_9	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0069055_10	phrog_33	70.4	4.6e-20	distal tail protein Dit	tail
UniRef90	UHGV-0069055_10	UniRef90_UPI00189E4294	84.7	3.9e-16	phage tail family protein	N/A
eggNOG-mapper	UHGV-0069055_10	1160721.RBI_I01575	90.9	3.24e-19	Phage tail protein	N/A
COG	UHGV-0069055_10	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0069055_10	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0069055_11	phrog_23464	244.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0069055_11	665950.HMPREF1025_02660	185.0	0	phage tail tape measure protein	N/A
COG	UHGV-0069055_11	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0069055_11	COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0069055_14	phrog_885	150.8	7.00649e-45	major tail protein	tail
UniRef90	UHGV-0069055_14	UniRef90_A0A3D3W9F4	171.0	0	CBM_X2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0069055_14	1321814.HMPREF9089_00935	168.0	0	N/A	N/A
structural_annotation	UHGV-0069055_14	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0069055_15	457396.CSBG_01053	50.1	0.00000438	N/A	N/A
structural_annotation	UHGV-0069055_15	PF12691	N/A	N/A	N/A	N/A
UniRef90	UHGV-0069055_16	UniRef90_UPI001A9B6FBF	174.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0069055_16	642492.Clole_0747	138.0	5.35e-40	N/A	N/A
structural_annotation	UHGV-0069055_16	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0069055_17	phrog_1951	88.7	4.7e-26	head-tail adaptor	connector
UniRef90	UHGV-0069055_17	UniRef90_A0A374MZF9	153.0	0	Phage head-tail adapter protein	N/A
eggNOG-mapper	UHGV-0069055_17	768704.Desmer_4460	64.7	0.00000000000409	head-tail adaptor	N/A
NCBIFam	UHGV-0069055_17	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-0069055_17	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0069055_17	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0069055_18	phrog_5223	60.2	2.6e-17	neck protein	connector
UniRef90	UHGV-0069055_18	UniRef90_UPI0019613678	58.5	0.00000000952	head-tail connector protein	N/A
eggNOG-mapper	UHGV-0069055_18	931626.Awo_c31020	53.9	0.0000000362	N/A	N/A
structural_annotation	UHGV-0069055_18	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0069055_19	phrog_10	152.9	2.8026e-45	major head protein	head and packaging
UniRef90	UHGV-0069055_19	UniRef90_A0A374N9V9	725.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0069055_19	1280689.AUJC01000011_gene1521	325.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0069055_19	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0069055_19	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0069055_19	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0069055_19	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0069055_20	K01358	119.5	4.4e-35	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0069055_20	phrog_94	187.8	0	head maturation protease	head and packaging
UniRef90	UHGV-0069055_20	UniRef90_A0A374NBM3	401.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0069055_20	1203606.HMPREF1526_00979	172.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0069055_20	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0069055_20	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0069055_20	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0069055_21	phrog_12	178.7	0	portal protein	head and packaging
UniRef90	UHGV-0069055_21	UniRef90_A0A374NAE1	761.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0069055_21	626523.GCWU000342_01027	401.0	0	Portal protein	N/A
Pfam	UHGV-0069055_21	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0069055_21	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0069055_21	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0069055_22	phrog_9	393.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-0069055_22	UniRef90_A0A374NB45	979.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0069055_22	1235793.C809_01917	723.0	0	Phage Terminase	N/A
Pfam	UHGV-0069055_22	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0069055_22	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0069055_22	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0069055_22	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0069055_23	phrog_1066	116.1	1.8e-34	N/A	unknown function
UniRef90	UHGV-0069055_23	UniRef90_A0A0D0SQQ8	84.0	2e-18	N/A	N/A
eggNOG-mapper	UHGV-0069055_23	1203606.HMPREF1526_00982	103.0	2.67e-27	N/A	N/A
PHROG	UHGV-0069055_24	phrog_119	51.2	0.000000000000019	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0069055_24	UniRef90_A0A374N9T6	163.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0069055_24	1235793.C809_01915	121.0	7.1e-34	HNH endonuclease	N/A
COG	UHGV-0069055_24	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0069055_25	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0069055_26	phrog_3584	150.0	1.54143e-44	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0069055_26	1235800.C819_00515	84.0	1.87e-16	N/A	N/A
structural_annotation	UHGV-0069055_26	PF21578,NF041486	N/A	N/A	N/A	N/A
PHROG	UHGV-0069055_28	phrog_824	146.2	9.94922e-44	N/A	unknown function
UniRef90	UHGV-0069055_28	UniRef90_UPI00164A50A6	249.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0069055_28	397288.C806_00096	145.0	2.20004e-43	VRR_NUC	N/A
Pfam	UHGV-0069055_28	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-0069055_28	PF08774	N/A	N/A	N/A	N/A
PHROG	UHGV-0069055_30	phrog_25754	61.2	7.5e-18	N/A	unknown function
eggNOG-mapper	UHGV-0069055_30	97139.C824_00736	69.7	0.0000000000000601	N/A	N/A
structural_annotation	UHGV-0069055_30	PF10842,MF_00436,TIGR02383	N/A	N/A	N/A	N/A
PHROG	UHGV-0069055_32	phrog_15609	121.7	1.9e-36	N/A	unknown function
UniRef90	UHGV-0069055_32	UniRef90_A0A373SLQ6	104.0	4.13e-22	N/A	N/A
eggNOG-mapper	UHGV-0069055_32	1514668.JOOA01000001_gene225	66.6	0.00000000184	N/A	N/A
structural_annotation	UHGV-0069055_32	PF11300,NF038070	N/A	N/A	N/A	N/A
PHROG	UHGV-0069055_33	phrog_8470	198.5	0	N/A	unknown function
UniRef90	UHGV-0069055_33	UniRef90_A0A1M7BII1	179.0	2.8026e-44	PcfJ-like protein	N/A
eggNOG-mapper	UHGV-0069055_33	397291.C804_06548	167.0	4.17993e-41	PcfJ-like protein	N/A
Pfam	UHGV-0069055_33	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0069055_33	PF14284	N/A	N/A	N/A	N/A
KOfam	UHGV-0069055_35	K07699	61.5	1.4e-17	spo0A; two-component system, response regulator, stage 0 sporulation protein A	N/A
eggNOG-mapper	UHGV-0069055_35	398512.JQKC01000002_gene1950	51.6	0.00000449	May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process	N/A
Pfam	UHGV-0069055_35	PF08769	N/A	N/A	Sporulation initiation factor Spo0A C terminal	Spo0A_C
COG	UHGV-0069055_35	COG0745	N/A	N/A	DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain	N/A
structural_annotation	UHGV-0069055_35	PF08769,TIGR02875	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0069055_38	COG1862	N/A	N/A	N/A	N/A
UniRef90	UHGV-0069055_39	UniRef90_UPI0010829306	49.7	0.00000937	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0069055_39	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-0069055_39	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
UniRef90	UHGV-0069055_40	UniRef90_A0A373XYJ8	128.0	2.23e-37	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0069055_40	887325.HMPREF0381_0113	74.3	8.17e-17	N/A	N/A
structural_annotation	UHGV-0069055_40	PF05339,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0069055_41	K22300	55.5	0.0000000000000014	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0069055_41	phrog_8	69.9	2.7e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-0069055_41	UniRef90_A0A136WE02	114.0	1.64e-29	Helix-turn-helix domain protein	N/A
eggNOG-mapper	UHGV-0069055_41	279010.BL03621	94.4	9.75e-22	Peptidase S24-like	N/A
Pfam	UHGV-0069055_41	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0069055_41	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0069055_41	PF13560,MF_00535,NF007257,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0069055_42	phrog_1914	160.9	0	N/A	unknown function
UniRef90	UHGV-0069055_42	UniRef90_UPI000E543E50	224.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0069055_42	1160721.RBI_I01604	153.0	1.12104e-44	N/A	N/A
Pfam	UHGV-0069055_42	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0069055_42	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0069055_42	PF06114,COG2856	N/A	N/A	N/A	N/A
UniRef90	UHGV-0069055_43	UniRef90_A0A374DTF3	108.0	4.06e-27	N/A	N/A
KOfam	UHGV-0069055_44	K14059	207.8	0	int; integrase	N/A
PHROG	UHGV-0069055_44	phrog_1	180.3	0	integrase	integration and excision
UniRef90	UHGV-0069055_44	UniRef90_A0A2N0ULT2	690.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0069055_44	428125.CLOLEP_02743	286.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0069055_44	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0069055_44	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0069055_44	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0069055	Yes	30,787	39	100	1
UHGV-0182738	No	31,645	39	100	1
UHGV-2053212	No	30,787	39	100	1