vOTU vOTU-082270

vOTU: vOTU-082270

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-082270
Number of genomes	1
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-03428 → vGENUS-08687 → vSUBGEN-09007 → vOTU-082270
Host lineage	Bacteria → Firmicutes_A → Clostridia → Christensenellales → CAG-74 → Limiplasma → Limiplasma merdipullorum
Host range breadth	Species
Lifestyle	temperate (Evidence: integrase)

Representative genome
Genome ID	UHGV-1869661
Biosample ID	N/A
Genome length (bp)	32,065 bps
CheckV completeness	94.26% (High-quality)
CDS count	51
CDS density	92.97%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Christensenellales → CAG-74 → Limiplasma → Limiplasma merdipullorum	Total connections	2	Host agreement	100
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 94.26)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1869661_1	phrog_361	71.8	9.8e-21	terminase small subunit	head and packaging
UniRef90	UHGV-1869661_1	UniRef90_A0A1C6H6I9	147.0	2.28412e-43	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-1869661_1	1145276.T479_19995	52.8	0.000000428	Phage terminase, small subunit	N/A
Pfam	UHGV-1869661_1	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
COG	UHGV-1869661_1	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1869661_1	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-1869661_2	phrog_9	303.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-1869661_2	UniRef90_A0A1Y4R6J8	1009.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1869661_2	1226322.HMPREF1545_00113	920.0	0	Phage Terminase	N/A
Pfam	UHGV-1869661_2	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1869661_2	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1869661_2	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1869661_2	PF20441,PF03354,MF_04013,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1869661_3	phrog_12	169.1	0	portal protein	head and packaging
UniRef90	UHGV-1869661_3	UniRef90_U2SKC6	561.0	0	Phage portal protein, HK97 family	N/A
eggNOG-mapper	UHGV-1869661_3	1226322.HMPREF1545_00114	561.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-1869661_3	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-1869661_3	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-1869661_3	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1869661_3	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1869661_4	K06904	151.0	1.12104e-44	N/A	N/A
PHROG	UHGV-1869661_4	phrog_80	181.5	0	head maturation protease	head and packaging
UniRef90	UHGV-1869661_4	UniRef90_A0A1F2PDD9	254.0	0	Caudovirus prohead protease	N/A
eggNOG-mapper	UHGV-1869661_4	398512.JQKC01000009_gene450	229.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-1869661_4	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-1869661_4	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-1869661_4	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-1869661_4	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-1869661_5	phrog_10	207.7	0	major head protein	head and packaging
UniRef90	UHGV-1869661_5	UniRef90_A0A1C6H720	699.0	0	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
eggNOG-mapper	UHGV-1869661_5	1226322.HMPREF1545_00116	679.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-1869661_5	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-1869661_5	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-1869661_5	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1869661_5	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1869661_5	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1869661_6	phrog_2550	66.5	2.6e-19	N/A	unknown function
UniRef90	UHGV-1869661_6	UniRef90_UPI0008717716	84.7	1.6e-19	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-1869661_6	1226322.HMPREF1545_00117	94.7	3.08e-24	N/A	N/A
structural_annotation	UHGV-1869661_6	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-1869661_7	phrog_19734	61.5	1.7e-17	N/A	unknown function
UniRef90	UHGV-1869661_7	UniRef90_A0A316NL63	97.8	5.57e-24	Head-tail adaptor protein	N/A
eggNOG-mapper	UHGV-1869661_7	999413.HMPREF1094_02006	57.8	0.00000000514	N/A	N/A
structural_annotation	UHGV-1869661_7	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1869661_8	1232446.BAIE02000002_gene829	93.2	3.01e-23	N/A	N/A
structural_annotation	UHGV-1869661_8	PF05657,COG3167	N/A	N/A	N/A	N/A
UniRef90	UHGV-1869661_9	UniRef90_A0A1C6FG30	137.0	2.59e-38	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-1869661_9	908340.HMPREF9406_2573	133.0	1.68e-37	N/A	N/A
structural_annotation	UHGV-1869661_9	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-1869661_10	phrog_88	109.4	2.1e-32	major tail protein	tail
UniRef90	UHGV-1869661_10	UniRef90_UPI0018771F27	294.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-1869661_10	33035.JPJF01000039_gene278	117.0	2.38e-30	N/A	N/A
NCBIFam	UHGV-1869661_10	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1869661_10	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1869661_11	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-1869661_13	phrog_23464	363.1	0	N/A	unknown function
UniRef90	UHGV-1869661_13	UniRef90_A0A7X9SLW3	101.0	3.16e-18	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-1869661_13	665950.HMPREF1025_02660	342.0	0	phage tail tape measure protein	N/A
COG	UHGV-1869661_13	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-1869661_13	PF20155,COG5280	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1869661_14	PF20458,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1869661_15	phrog_6616	65.1	5.6e-19	tail protein	tail
UniRef90	UHGV-1869661_15	UniRef90_A0A2Z4QA17	135.0	9.39e-36	KID repeat-containing protein	N/A
eggNOG-mapper	UHGV-1869661_15	1235797.C816_04180	153.0	2.0459e-43	N/A	N/A
structural_annotation	UHGV-1869661_15	PF21683,TIGR02126,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-1869661_16	phrog_32308	55.5	9.8e-25	N/A	unknown function
eggNOG-mapper	UHGV-1869661_16	1235797.C816_04179	130.0	9e-31	Chaperone of endosialidase	N/A
Pfam	UHGV-1869661_17	PF00041	N/A	N/A	Fibronectin type III domain	fn3
structural_annotation	UHGV-1869661_17	PF17744,NF011813,COG3979	N/A	N/A	N/A	N/A
KOfam	UHGV-1869661_18	K08131	47.9	0.000000000000044	COL9A; collagen type IX alpha	N/A
PHROG	UHGV-1869661_18	phrog_6320	69.1	8e-20	tail fiber protein	tail
eggNOG-mapper	UHGV-1869661_18	1297617.JPJD01000059_gene2615	63.2	0.0000000122	N/A	N/A
Pfam	UHGV-1869661_18	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
eggNOG-mapper	UHGV-1869661_20	1297617.JPJD01000034_gene669	132.0	1.89e-38	N/A	N/A
PHROG	UHGV-1869661_21	phrog_134	48.0	0.00000000000018	N/A	unknown function
UniRef90	UHGV-1869661_21	UniRef90_A0A6G3M4W0	64.7	0.000000000000524	XkdX family protein	N/A
eggNOG-mapper	UHGV-1869661_21	697281.Mahau_0596	63.5	0.000000000000242	Phage uncharacterised protein (Phage_XkdX)	N/A
Pfam	UHGV-1869661_21	PF09693	N/A	N/A	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
NCBIFam	UHGV-1869661_21	TIGR01669.1	N/A	N/A	XkdX family protein	N/A
structural_annotation	UHGV-1869661_21	PF09693,TIGR01669	N/A	N/A	N/A	N/A
KOfam	UHGV-1869661_23	K01448	157.4	0	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1869661_23	phrog_18955	184.0	0	N/A	unknown function
UniRef90	UHGV-1869661_23	UniRef90_A0A1Y3X8T4	378.0	0	MurNAc-LAA domain-containing protein	N/A
eggNOG-mapper	UHGV-1869661_23	1226322.HMPREF1545_00782	265.0	0	N/A	N/A
Pfam	UHGV-1869661_23	PF09992	N/A	N/A	Phosphodiester glycosidase	NAGPA
Pfam	UHGV-1869661_23	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-1869661_23	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-1869661_23	PF01520,PF09992,MF_00417,TIGR02883,COG0860,COG4632	N/A	N/A	N/A	N/A
PHROG	UHGV-1869661_24	phrog_1129	64.1	1.7e-18	holin	lysis
UniRef90	UHGV-1869661_24	UniRef90_A0A416MDZ9	132.0	1.53e-38	Enolase	N/A
eggNOG-mapper	UHGV-1869661_24	742740.HMPREF9474_03522	120.0	1.77e-34	N/A	N/A
Pfam	UHGV-1869661_24	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1869661_24	PF06946	N/A	N/A	N/A	N/A
KOfam	UHGV-1869661_26	K14059	304.0	0	int; integrase	N/A
PHROG	UHGV-1869661_26	phrog_1	220.2	0	integrase	integration and excision
UniRef90	UHGV-1869661_26	UniRef90_A0A1Y4UHV7	598.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-1869661_26	877414.ATWA01000018_gene2094	535.0	0	Phage integrase family	N/A
Pfam	UHGV-1869661_26	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1869661_26	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1869661_26	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1869661_26	PF00589,PF02920,PF14659,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-1869661_27	phrog_14275	60.5	2.2e-17	N/A	unknown function
UniRef90	UHGV-1869661_27	UniRef90_A0A413FAJ1	116.0	1.76e-29	Zinc ribbon domain-containing protein	N/A
eggNOG-mapper	UHGV-1869661_27	1031288.AXAA01000044_gene1983	105.0	8.23e-27	N/A	N/A
NCBIFam	UHGV-1869661_27	NF038353.1	N/A	N/A	FxLYD domain-containing protein	N/A
structural_annotation	UHGV-1869661_27	PF07233,NF038353,COG5633	N/A	N/A	N/A	N/A
KOfam	UHGV-1869661_28	K01356	151.2	9.80909e-45	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-1869661_28	phrog_4	123.2	2.6e-36	transcriptional repressor	transcription regulation
UniRef90	UHGV-1869661_28	UniRef90_UPI001C111AC6	237.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1869661_28	742738.HMPREF9460_00775	153.0	4.06377e-44	Peptidase S24-like	N/A
Pfam	UHGV-1869661_28	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-1869661_28	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-1869661_28	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1869661_28	PF00717,PF12844,MF_00015,TIGR00498,COG1974	N/A	N/A	N/A	N/A
UniRef90	UHGV-1869661_29	UniRef90_UPI00163A3CDC	57.0	0.00000000544	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1869661_29	257314.LJ_1456	47.8	0.00000348	N/A	N/A
Pfam	UHGV-1869661_29	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-1869661_29	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-1869661_29	PF05339,NF041575,COG3655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1869661_30	PF09202,MF_01177,TIGR02702,COG1846	N/A	N/A	N/A	N/A
PHROG	UHGV-1869661_32	phrog_7338	43.9	0.0000000000035	N/A	unknown function
UniRef90	UHGV-1869661_32	UniRef90_UPI0017460947	69.3	0.000000000000214	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1869661_32	999423.HMPREF9161_01307	51.6	0.000000128	Helix-turn-helix domain	N/A
Pfam	UHGV-1869661_32	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-1869661_32	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
PHROG	UHGV-1869661_34	phrog_4973	65.9	5.7e-19	N/A	unknown function
eggNOG-mapper	UHGV-1869661_34	935261.JAGL01000009_gene1175	52.4	0.000000092	Helix-turn-helix domain	N/A
Pfam	UHGV-1869661_34	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-1869661_35	PF09943	N/A	N/A	N/A	N/A
PHROG	UHGV-1869661_36	phrog_659	199.1	0	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1869661_36	UniRef90_UPI001E5A6693	287.0	0	N/A	N/A
eggNOG-mapper	UHGV-1869661_36	1507.HMPREF0262_00431	218.0	0	N/A	N/A
Pfam	UHGV-1869661_36	PF06378	N/A	N/A	N/A	DUF1071
structural_annotation	UHGV-1869661_36	PF06378,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-1869661_37	phrog_72	64.7	1.1e-18	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1869661_37	UniRef90_UPI001F3F3E5C	179.0	0	recombination protein NinB	N/A
eggNOG-mapper	UHGV-1869661_37	1507.HMPREF0262_00432	124.0	9.71e-34	N/A	N/A
structural_annotation	UHGV-1869661_37	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-1869661_38	phrog_7370	60.3	3.3e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1869661_38	UniRef90_A0A3D0LZU3	138.0	2.85999e-40	HNH domain-containing protein	N/A
eggNOG-mapper	UHGV-1869661_38	445972.ANACOL_01826	112.0	3.43e-31	HNH nucleases	N/A
Pfam	UHGV-1869661_38	PF14279	N/A	N/A	HNH endonuclease	HNH_5
KOfam	UHGV-1869661_39	K03111	143.9	1.69978e-42	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1869661_39	phrog_44	152.9	1.4013e-45	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1869661_39	UniRef90_R5SNS5	181.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1869661_39	1519439.JPJG01000082_gene432	181.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-1869661_39	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1869661_39	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1869661_39	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1869661_39	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1869661_39	PF00436,MF_00984,NF005579,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1869661_40	phrog_15768	63.7	3.3e-18	N/A	unknown function
UniRef90	UHGV-1869661_40	UniRef90_A0A1C6J8D5	104.0	1.74e-23	N/A	N/A
eggNOG-mapper	UHGV-1869661_40	1121344.JHZO01000003_gene982	62.0	0.0000000127	N/A	N/A
Pfam	UHGV-1869661_40	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-1869661_40	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-1869661_41	K01160	62.7	1.1e-17	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1869661_41	phrog_1682	85.2	9.3e-25	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1869661_41	UniRef90_A0A212J3R9	152.0	1.4013e-45	Endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-1869661_41	1226322.HMPREF1545_04070	147.0	6.72623e-44	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
Pfam	UHGV-1869661_41	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1869661_41	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1869661_41	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-1869661_44	phrog_757	219.4	0	DNA methyltransferase	other
UniRef90	UHGV-1869661_44	UniRef90_A0A4D7ASE3	243.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-1869661_44	1291050.JAGE01000001_gene2906	276.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-1869661_44	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1869661_44	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
UniRef90	UHGV-1869661_45	UniRef90_UPI0018AC26C5	56.6	0.0000000247	Lar family restriction alleviation protein	N/A
eggNOG-mapper	UHGV-1869661_45	742738.HMPREF9460_04054	61.2	0.0000000000767	Restriction alleviation protein Lar	N/A
UniRef90	UHGV-1869661_47	UniRef90_UPI001C3A10B1	90.9	2.73e-21	Zinc ribbon domain-containing protein	N/A
eggNOG-mapper	UHGV-1869661_47	1226322.HMPREF1545_00023	55.1	0.0000000531	N/A	N/A
eggNOG-mapper	UHGV-1869661_49	1232449.BAHV02000018_gene1537	122.0	1.07e-33	N/A	N/A
eggNOG-mapper	UHGV-1869661_51	1226322.HMPREF1545_00023	49.3	0.00000385	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1869661	Yes	32,065	51	94	1