vOTU vOTU-082501

vOTU: vOTU-082501

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-082501
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-07866 → vGENUS-21885 → vSUBGEN-43528 → vOTU-082501
Host lineage	Bacteria → Actinobacteriota → Coriobacteriia → Coriobacteriales → Eggerthellaceae → CAG-1427 → CAG-1427 sp000435675
Host range breadth	Species
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0091980
Biosample ID	SAMEA3449224
Genome length (bp)	40,050 bps
CheckV completeness	98.00% (High-quality)
CDS count	55
CDS density	90.61%
tRNA count	1
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Actinobacteriota → Coriobacteriia → Coriobacteriales → Eggerthellaceae → CAG-1427 → CAG-1427 sp000435675	Total connections	16	Host agreement	75
PHIST-predicted host lineage	Bacteria → Actinobacteriota → Coriobacteriia → Coriobacteriales → Eggerthellaceae → CAG-1427 → CAG-1427 sp900538545	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 98)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0091980_1	UniRef90_R7AQC4	280.0	0	Pyridoxamine 5'-phosphate oxidase-related FMN-binding	N/A
eggNOG-mapper	UHGV-0091980_1	479437.Elen_0996	189.0	0	Pfam:Pyridox_oxidase	N/A
Pfam	UHGV-0091980_1	PF01243	N/A	N/A	Pyridoxamine 5'-phosphate oxidase	Putative_PNPOx
COG	UHGV-0091980_1	COG5015	N/A	N/A	Pyridoxamine 5'-phosphate oxidase (PNPOx-like) family protein	N/A
KOfam	UHGV-0091980_2	K14059	201.5	0	int; integrase	N/A
PHROG	UHGV-0091980_2	phrog_1	184.8	0	integrase	integration and excision
UniRef90	UHGV-0091980_2	UniRef90_UPI0015E0789C	326.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0091980_2	1235794.C811_01339	308.0	0	Site-specific recombinase, phage integrase family	N/A
Pfam	UHGV-0091980_2	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0091980_2	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0091980_2	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0091980_2	PF00589,PF14659,MF_01808,TIGR02224,COG4973	N/A	N/A	N/A	N/A
KOfam	UHGV-0091980_5	K01356	108.4	1.1e-31	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0091980_5	phrog_4	91.7	1.1e-26	transcriptional repressor	transcription regulation
UniRef90	UHGV-0091980_5	UniRef90_A0A6N8IGH0	355.0	0	Peptidase_S24 domain-containing protein	N/A
eggNOG-mapper	UHGV-0091980_5	553184.ATORI0001_1026	189.0	0	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-0091980_5	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0091980_5	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0091980_5	PF00717,PF01381,MF_00015,TIGR00498,COG2932	N/A	N/A	N/A	N/A
UniRef90	UHGV-0091980_10	UniRef90_UPI0003FCD58C	62.4	0.0000000000174	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0091980_10	1235794.C811_01347	58.9	0.0000000000735	N/A	N/A
PHROG	UHGV-0091980_11	phrog_323	40.9	0.000000000011	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0091980_11	UniRef90_A0A7X5DET2	86.7	6.02e-18	HTH myb-type domain-containing protein	N/A
KOfam	UHGV-0091980_13	K03546	72.6	4.5e-21	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-0091980_13	phrog_1499	460.2	0	N/A	unknown function
UniRef90	UHGV-0091980_13	UniRef90_A0A369MN61	499.0	0	Chromosome segregation protein SMC	N/A
eggNOG-mapper	UHGV-0091980_13	1140001.I571_01812	465.0	0	AAA domain	N/A
Pfam	UHGV-0091980_13	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-0091980_13	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0091980_13	PF11398,MF_00365,TIGR00634,COG0497	N/A	N/A	N/A	N/A
PHROG	UHGV-0091980_14	phrog_434	45.8	0.00000000000095	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
PHROG	UHGV-0091980_15	phrog_124	241.4	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0091980_15	UniRef90_UPI0003F96826	365.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0091980_15	1121866.AUGK01000014_gene2070	365.0	0	AAA domain	N/A
Pfam	UHGV-0091980_15	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-0091980_15	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-0091980_16	phrog_2698	134.1	5.4e-40	N/A	unknown function
UniRef90	UHGV-0091980_16	UniRef90_A0A369MRQ8	125.0	3.5e-33	N/A	N/A
eggNOG-mapper	UHGV-0091980_16	1121866.AUGK01000014_gene2069	123.0	6.99e-33	N/A	N/A
KOfam	UHGV-0091980_17	K17677	221.0	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-0091980_17	phrog_16	174.1	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0091980_17	UniRef90_A0A7X5DCP3	304.0	0	DEAD/DEAH box helicase (Fragment)	N/A
eggNOG-mapper	UHGV-0091980_17	1232449.BAHV02000010_gene2699	315.0	0	helicase superfamily c-terminal domain	N/A
PADLOC	UHGV-0091980_17	mREase_IV_00005	98.0	1e-28	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0091980_17	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
COG	UHGV-0091980_17	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0091980_17	PF04851,MF_00350,TIGR04095,COG1061	N/A	N/A	N/A	N/A
KOfam	UHGV-0091980_18	K17677	124.4	6.1e-37	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-0091980_18	phrog_16	105.3	2.8e-31	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0091980_18	UniRef90_UPI001CE4432C	445.0	0	DEAD/DEAH box helicase family protein	N/A
eggNOG-mapper	UHGV-0091980_18	1111121.HMPREF1247_0833	451.0	0	PLD-like domain	N/A
PADLOC	UHGV-0091980_18	mREase_IV_00005	40.8	0.000000000021	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0091980_18	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0091980_18	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
KOfam	UHGV-0091980_19	K07505	378.6	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-0091980_19	phrog_2597	1088.5	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0091980_19	UniRef90_A0A3F3PDT3	914.0	0	DNA primase	N/A
eggNOG-mapper	UHGV-0091980_19	610130.Closa_1370	890.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-0091980_19	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
Pfam	UHGV-0091980_19	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-0091980_19	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-0091980_19	PF13481,PF16793,PF08220,MF_00350,MF_00700,NF006606,NF001641,COG3598,COG3285	N/A	N/A	N/A	N/A
PHROG	UHGV-0091980_21	phrog_140	56.3	7.3e-16	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0091980_21	UniRef90_UPI001EDF3A5F	110.0	1.03e-28	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0091980_21	394503.Ccel_3302	67.4	0.00000000000198	endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0091980_21	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0091980_21	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0091980_21	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0091980_22	phrog_2044	99.6	1.5e-29	RNA polymerase beta subunit	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0091980_22	1636205.A0A0E3TAK6_9CAUD	87.8	6.22e-22	N/A	N/A
structural_annotation	UHGV-0091980_22	MF_00337,NF010671,COG1722	N/A	N/A	N/A	N/A
PHROG	UHGV-0091980_23	phrog_1891	167.4	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0091980_23	UniRef90_UPI001C3F04AC	270.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0091980_23	742742.HMPREF9452_00411	161.0	1.4013e-45	HNH endonuclease	N/A
Pfam	UHGV-0091980_23	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-0091980_23	PF13392,PF13276	N/A	N/A	N/A	N/A
PHROG	UHGV-0091980_27	phrog_940	254.9	0	nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0091980_27	UniRef90_UPI001365E517	540.0	0	N/A	N/A
eggNOG-mapper	UHGV-0091980_27	1232449.BAHV02000018_gene1534	260.0	0	N/A	N/A
PADLOC	UHGV-0091980_27	MTase_II_00015	86.1	6e-25	Type II methyltransferase	RM
Pfam	UHGV-0091980_27	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-0091980_27	PF14386	N/A	N/A	N/A	DUF4417
COG	UHGV-0091980_27	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0091980_27	PF14386,PF02195,TIGR00180	N/A	N/A	N/A	N/A
PHROG	UHGV-0091980_29	phrog_4102	57.5	3e-16	terminase small subunit	head and packaging
UniRef90	UHGV-0091980_29	UniRef90_UPI0013662E3C	183.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0091980_29	1232436.CAPF01000009_gene1763	78.2	9.03e-17	N/A	N/A
Pfam	UHGV-0091980_29	PF01527	N/A	N/A	Transposase	HTH_Tnp_1
KOfam	UHGV-0091980_30	K06909	311.9	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0091980_30	phrog_3717	129.9	1.6e-38	terminase large subunit	head and packaging
UniRef90	UHGV-0091980_30	UniRef90_UPI001365AB9C	580.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0091980_30	469378.Ccur_02810	421.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0091980_30	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0091980_30	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0091980_30	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0091980_31	phrog_533	329.9	0	portal protein	head and packaging
UniRef90	UHGV-0091980_31	UniRef90_UPI000DF7AA34	511.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0091980_31	479437.Elen_2623	450.0	0	phage minor capsid protein	N/A
Pfam	UHGV-0091980_31	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0091980_31	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0091980_32	phrog_581	168.2	0	minor head protein	head and packaging
UniRef90	UHGV-0091980_32	UniRef90_A0A143WWH6	293.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0091980_32	479437.Elen_2624	315.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0091980_32	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0091980_32	COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0091980_34	phrog_31118	93.4	2.6e-27	N/A	unknown function
eggNOG-mapper	UHGV-0091980_34	445975.COLSTE_01111	146.0	2.4803e-42	N/A	N/A
structural_annotation	UHGV-0091980_34	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0091980_35	phrog_422	130.8	8e-39	major head protein	head and packaging
eggNOG-mapper	UHGV-0091980_35	1111121.HMPREF1247_0844	210.0	0	N/A	N/A
PHROG	UHGV-0091980_36	phrog_541	51.9	0.000000000000012	head-tail adaptor	connector
eggNOG-mapper	UHGV-0091980_36	693746.OBV_18110	66.6	0.00000000000166	N/A	N/A
structural_annotation	UHGV-0091980_37	PF20536,MF_01370,TIGR02126	N/A	N/A	N/A	N/A
PHROG	UHGV-0091980_38	phrog_556	49.9	0.000000000000054	minor head protein	head and packaging
UniRef90	UHGV-0091980_38	UniRef90_UPI001967B4B3	92.8	6.62e-22	minor capsid protein	N/A
eggNOG-mapper	UHGV-0091980_38	862514.HMPREF0623_0290	53.5	0.00000023	N/A	N/A
Pfam	UHGV-0091980_38	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0091980_38	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0091980_39	phrog_3266	56.4	4.8e-16	tail completion	connector
eggNOG-mapper	UHGV-0091980_39	693746.OBV_18140	166.0	0	N/A	N/A
structural_annotation	UHGV-0091980_39	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0091980_40	phrog_3099	65.3	1.1e-18	N/A	unknown function
eggNOG-mapper	UHGV-0091980_40	1235797.C816_04186	217.0	0	N/A	N/A
structural_annotation	UHGV-0091980_40	PF10772,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0091980_41	phrog_11299	61.6	1.5e-17	N/A	unknown function
eggNOG-mapper	UHGV-0091980_41	693746.OBV_18160	114.0	1.2e-30	N/A	N/A
structural_annotation	UHGV-0091980_41	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0091980_42	phrog_706	116.2	2.5e-34	N/A	unknown function
UniRef90	UHGV-0091980_42	UniRef90_UPI000682A80B	190.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0091980_42	693746.OBV_18170	177.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0091980_42	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0091980_42	PF06854	N/A	N/A	N/A	N/A
KOfam	UHGV-0091980_43	K03529	45.5	0.00000000000036	smc; chromosome segregation protein	N/A
PHROG	UHGV-0091980_43	phrog_1535	71.3	2.4e-30	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0091980_43	665956.HMPREF1032_03057	87.0	0.0000000000000144	tape measure	N/A
COG	UHGV-0091980_43	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-0091980_44	phrog_1194	84.3	1e-24	N/A	unknown function
UniRef90	UHGV-0091980_44	UniRef90_A0A0B3WNQ4	62.0	0.000000000826	N/A	N/A
eggNOG-mapper	UHGV-0091980_44	257314.LJ_0323	55.5	0.000000047	N/A	N/A
structural_annotation	UHGV-0091980_44	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0091980_45	phrog_6616	403.5	0	tail protein	tail
UniRef90	UHGV-0091980_45	UniRef90_UPI00085BC306	301.0	0	tail fiber domain-containing protein	N/A
eggNOG-mapper	UHGV-0091980_45	1121866.AUGK01000003_gene1439	379.0	0	Phage minor structural protein	N/A
COG	UHGV-0091980_45	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0091980_45	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0091980_47	PF07761	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0091980_48	1121866.AUGK01000003_gene1445	80.1	0.00000000000000919	N/A	N/A
KOfam	UHGV-0091980_50	K14059	170.4	0	int; integrase	N/A
PHROG	UHGV-0091980_50	phrog_1	149.7	2.38221e-44	integrase	integration and excision
UniRef90	UHGV-0091980_50	UniRef90_A0A7K3L3V3	385.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0091980_50	1235794.C811_01388	379.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0091980_50	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0091980_50	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0091980_50	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0091980_50	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0091980_51	UniRef90_A0A6L8Q696	179.0	0	Phage holin family protein	N/A
eggNOG-mapper	UHGV-0091980_51	1384484.AEQU_1162	182.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-0091980_51	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
PHROG	UHGV-0091980_52	phrog_1454	92.0	3.9e-27	N/A	unknown function
UniRef90	UHGV-0091980_52	UniRef90_A0A0D1WCB4	85.1	3.14e-20	Phosphomannomutase	N/A
eggNOG-mapper	UHGV-0091980_52	1232453.BAIF02000027_gene4203	85.9	3.14e-21	N/A	N/A
KOfam	UHGV-0091980_54	K01447	83.8	2.8e-24	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0091980_54	phrog_7854	100.7	3.6e-30	endolysin	lysis
UniRef90	UHGV-0091980_54	UniRef90_UPI001CC62653	284.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0091980_54	1235794.C811_01391	244.0	0	Ami_2	N/A
Pfam	UHGV-0091980_54	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0091980_54	PF19127	N/A	N/A	Choline-binding repeat	Choline_bind_3
Pfam	UHGV-0091980_54	PF01473	N/A	N/A	Putative cell wall binding repeat	Choline_bind_1
COG	UHGV-0091980_54	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0091980	Yes	40,050	51	98	1