vOTU vOTU-082562

vOTU: vOTU-082562

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-082562
Number of genomes	3
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-103
Taxonomy (UHGV)	vFAM-00010 → vSUBFAM-00261 → vGENUS-00170 → vSUBGEN-30392 → vOTU-082562
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-103
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-2016403
Biosample ID	SAMEA2737728
Genome length (bp)	35,106 bps
CheckV completeness	99.90% (High-quality)
CDS count	51
CDS density	90.97%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-103	Total connections	290	Host agreement	96.21
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-103	Total connections	140	Host agreement	92.86

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-2016403_1	phrog_1129	61.5	1e-17	holin	lysis
UniRef90	UHGV-2016403_1	UniRef90_A0A8J6J3M3	102.0	1.43e-26	Phage holin family protein	N/A
eggNOG-mapper	UHGV-2016403_1	665956.HMPREF1032_03272	97.4	1.8e-25	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-2016403_1	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-2016403_1	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-2016403_2	phrog_1863	62.3	1.7e-18	N/A	unknown function
UniRef90	UHGV-2016403_2	UniRef90_UPI001F223E8B	68.6	0.000000000000232	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-2016403_2	1226322.HMPREF1545_04027	68.2	0.0000000000000539	N/A	N/A
KOfam	UHGV-2016403_3	K01447	65.6	1.1e-18	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-2016403_3	phrog_1794	145.0	6.69821e-43	amidase	lysis
UniRef90	UHGV-2016403_3	UniRef90_R5AZE6	294.0	0	N-acetylmuramoyl-L-alanine amidase family 2	N/A
eggNOG-mapper	UHGV-2016403_3	397288.C806_00777	209.0	0	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	N/A
Pfam	UHGV-2016403_3	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-2016403_3	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-2016403_3	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
KOfam	UHGV-2016403_4	K13884	51.0	0.000000000000013	MARCO; macrophage receptor with collagenous structure	N/A
PHROG	UHGV-2016403_4	phrog_11541	99.2	1.8e-29	N/A	unknown function
eggNOG-mapper	UHGV-2016403_4	1175629.AJTG01000006_gene514	121.0	5.46e-28	N/A	N/A
Pfam	UHGV-2016403_4	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
Pfam	UHGV-2016403_4	PF13472	N/A	N/A	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
structural_annotation	UHGV-2016403_5	PF00629,NF033675	N/A	N/A	N/A	N/A
PHROG	UHGV-2016403_7	phrog_6616	60.1	6e-18	tail protein	tail
structural_annotation	UHGV-2016403_8	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-2016403_9	phrog_1535	108.6	0	tail length tape measure protein	tail
UniRef90	UHGV-2016403_9	UniRef90_A0A810PX76	106.0	4.25e-20	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-2016403_9	1235797.C816_04182	199.0	0	SLT domain	N/A
COG	UHGV-2016403_9	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2016403_9	PF16789,TIGR02473	N/A	N/A	N/A	N/A
PHROG	UHGV-2016403_10	phrog_706	108.1	7.6e-32	N/A	unknown function
UniRef90	UHGV-2016403_10	UniRef90_UPI00164D7633	176.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-2016403_10	693746.OBV_18170	169.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-2016403_10	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-2016403_10	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-2016403_11	phrog_11299	99.5	3.3e-29	N/A	unknown function
eggNOG-mapper	UHGV-2016403_11	1449050.JNLE01000003_gene3883	66.2	0.0000000000104	N/A	N/A
structural_annotation	UHGV-2016403_11	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-2016403_12	phrog_3099	88.2	1e-25	N/A	unknown function
eggNOG-mapper	UHGV-2016403_12	693746.OBV_18150	223.0	0	N/A	N/A
structural_annotation	UHGV-2016403_12	PF10772,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-2016403_13	phrog_3266	62.9	4.6e-18	tail completion	connector
eggNOG-mapper	UHGV-2016403_13	476272.RUMHYD_01781	119.0	5.44e-32	N/A	N/A
structural_annotation	UHGV-2016403_13	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-2016403_14	phrog_556	63.6	5.5e-19	minor head protein	head and packaging
UniRef90	UHGV-2016403_14	UniRef90_A0A1H7MNM8	117.0	8.08e-31	Minor capsid protein	N/A
eggNOG-mapper	UHGV-2016403_14	476272.RUMHYD_01780	115.0	5.99e-31	N/A	N/A
Pfam	UHGV-2016403_14	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-2016403_14	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-2016403_15	phrog_3366	53.9	0.0000000000000034	N/A	unknown function
structural_annotation	UHGV-2016403_15	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-2016403_16	phrog_541	67.7	1.6e-19	head-tail adaptor	connector
eggNOG-mapper	UHGV-2016403_16	476272.RUMHYD_01778	72.4	0.0000000000000608	N/A	N/A
PHROG	UHGV-2016403_17	phrog_267	53.7	0.000000000000003	major head protein	head and packaging
eggNOG-mapper	UHGV-2016403_17	1235799.C818_04223	160.0	1.54143e-44	N/A	N/A
structural_annotation	UHGV-2016403_17	PF11651,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-2016403_18	phrog_194	41.0	0.000000000032	head scaffolding protein	head and packaging
UniRef90	UHGV-2016403_18	UniRef90_UPI001C0EBA51	126.0	6.74e-33	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-2016403_18	1539298.JO41_08210	60.5	0.00000000901	Phage minor structural protein GP20	N/A
Pfam	UHGV-2016403_18	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-2016403_18	PF06810	N/A	N/A	N/A	N/A
UniRef90	UHGV-2016403_19	UniRef90_UPI000C08D045	48.1	0.00000579	N/A	N/A
PHROG	UHGV-2016403_20	phrog_581	244.8	0	minor head protein	head and packaging
UniRef90	UHGV-2016403_20	UniRef90_A0A3D4T830	352.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-2016403_20	476272.RUMHYD_01761	228.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-2016403_20	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
Pfam	UHGV-2016403_20	PF21814	N/A	N/A	N/A	DUF6883
COG	UHGV-2016403_20	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2016403_20	PF06152,PF21814	N/A	N/A	N/A	N/A
PHROG	UHGV-2016403_21	phrog_533	211.6	0	portal protein	head and packaging
UniRef90	UHGV-2016403_21	UniRef90_A0A173TY48	346.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-2016403_21	33035.JPJF01000106_gene3135	328.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-2016403_21	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-2016403_22	K06909	392.5	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-2016403_22	phrog_5653	145.4	2.49431e-43	terminase large subunit	head and packaging
UniRef90	UHGV-2016403_22	UniRef90_A0A416S378	637.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-2016403_22	33035.JPJF01000106_gene3136	600.0	0	Terminase small subunit	N/A
Pfam	UHGV-2016403_22	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
Pfam	UHGV-2016403_22	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-2016403_22	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-2016403_22	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-2016403_22	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-2016403_22	PF04466,PF17288,PF03592,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-2016403_24	phrog_36	55.3	0.0000000000000013	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-2016403_24	428125.CLOLEP_01806	103.0	5.11e-26	N/A	N/A
Pfam	UHGV-2016403_24	PF07374	N/A	N/A	N/A	DUF1492
structural_annotation	UHGV-2016403_24	PF07374,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-2016403_25	phrog_3136	117.2	3.4e-35	N/A	unknown function
UniRef90	UHGV-2016403_25	UniRef90_UPI001C26B029	125.0	1.99e-32	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-2016403_25	97139.C824_00742	58.5	0.0000000238	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-2016403_25	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-2016403_25	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-2016403_26	phrog_5781	66.1	4.9e-19	N/A	unknown function
UniRef90	UHGV-2016403_26	UniRef90_A0A1C6JA96	101.0	7.04e-25	Nucleoside 2-deoxyribosyltransferase	N/A
eggNOG-mapper	UHGV-2016403_26	1048834.TC41_1868	58.5	0.00000000612	N/A	N/A
Pfam	UHGV-2016403_26	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-2016403_26	PF14359,MF_03036,TIGR03646,COG3613	N/A	N/A	N/A	N/A
KOfam	UHGV-2016403_27	K06223	228.0	0	dam; DNA adenine methylase [EC:2.1.1.72]	N/A
PHROG	UHGV-2016403_27	phrog_56	176.2	0	DNA methyltransferase	other
UniRef90	UHGV-2016403_27	UniRef90_R9MCP5	310.0	0	DNA adenine methylase	N/A
eggNOG-mapper	UHGV-2016403_27	1235799.C818_02654	310.0	0	D12 class N6 adenine-specific DNA methyltransferase	N/A
PADLOC	UHGV-2016403_27	MTase_II_00030	273.5	0	Type II methyltransferase	RM
Pfam	UHGV-2016403_27	PF02086	N/A	N/A	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
COG	UHGV-2016403_27	COG0338	N/A	N/A	DNA-adenine methylase	N/A
structural_annotation	UHGV-2016403_27	PF02086,MF_01872,NF008152,COG0338	N/A	N/A	N/A	N/A
KOfam	UHGV-2016403_28	K00558	222.3	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-2016403_28	phrog_116	258.8	0	DNA methyltransferase	other
UniRef90	UHGV-2016403_28	UniRef90_A0A350THX9	735.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-2016403_28	1121334.KB911073_gene1852	614.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
PADLOC	UHGV-2016403_28	MTase_II_00020	96.1	3.9e-31	Type II methyltransferase	RM
Pfam	UHGV-2016403_28	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-2016403_28	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-2016403_28	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2016403_29	1232449.BAHV02000016_gene1829	136.0	2.41e-39	N/A	N/A
PHROG	UHGV-2016403_30	phrog_843	76.3	3.6e-22	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2016403_30	UniRef90_UPI0015713C96	82.8	6.68e-18	Holliday junction resolvase RecU	N/A
eggNOG-mapper	UHGV-2016403_30	1235802.C823_05707	89.0	5.02e-21	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	N/A
Pfam	UHGV-2016403_30	PF03838	N/A	N/A	Recombination protein U	RecU
COG	UHGV-2016403_30	COG3331	N/A	N/A	Penicillin-binding protein-related factor A, putative recombinase	N/A
PHROG	UHGV-2016403_31	phrog_3584	131.5	6.2e-39	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-2016403_31	411470.RUMGNA_02047	140.0	2.7e-37	N/A	N/A
structural_annotation	UHGV-2016403_31	PF21578	N/A	N/A	N/A	N/A
KOfam	UHGV-2016403_34	K06284	115.2	3.8e-34	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	N/A
PHROG	UHGV-2016403_34	phrog_4681	100.3	6.9e-30	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-2016403_34	UniRef90_A0A161S416	104.0	1.81e-27	AbrB family transcriptional regulator	N/A
eggNOG-mapper	UHGV-2016403_34	268407.PWYN_12320	104.0	3.11e-28	AbrB family transcriptional regulator	N/A
Pfam	UHGV-2016403_34	PF04014	N/A	N/A	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
NCBIFam	UHGV-2016403_34	TIGR01439.1	N/A	N/A	transcriptional regulator, AbrB family	N/A
COG	UHGV-2016403_34	COG2002	N/A	N/A	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	N/A
structural_annotation	UHGV-2016403_34	PF15937,TIGR01439,NF004424,COG2002	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2016403_35	PF21291,TIGR03070,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-2016403_36	phrog_585	42.6	0.000000000011	N/A	unknown function
Pfam	UHGV-2016403_36	PF10711	N/A	N/A	N/A	DUF2513
PHROG	UHGV-2016403_37	phrog_750	43.1	0.0000000000042	N/A	unknown function
structural_annotation	UHGV-2016403_37	PF13835,NF040858	N/A	N/A	N/A	N/A
KOfam	UHGV-2016403_40	K07729	40.8	0.000000000045	K07729; putative transcriptional regulator	N/A
UniRef90	UHGV-2016403_40	UniRef90_UPI0013ECC13D	63.5	0.00000000000758	helix-turn-helix domain-containing protein	N/A
PADLOC	UHGV-2016403_40	retron_type_VI_hth_cluster2_1	41.1	0.000000000049	N/A	Retron
Pfam	UHGV-2016403_40	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2016403_40	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-2016403_40	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-2016403_41	K22300	60.8	2.9e-17	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-2016403_41	phrog_8	50.4	0.000000000000046	transcriptional regulator	transcription regulation
UniRef90	UHGV-2016403_41	UniRef90_UPI000E31F980	89.7	9.38e-21	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-2016403_41	1125712.HMPREF1316_2394	63.2	0.000000000202	Peptidase S24-like	N/A
PADLOC	UHGV-2016403_41	retron_type_VI_hth_cluster2_1	40.4	0.000000000064	N/A	Retron
Pfam	UHGV-2016403_41	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2016403_41	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-2016403_41	PF13560,MF_00535,NF007257,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-2016403_42	phrog_1914	102.9	1.4e-30	N/A	unknown function
UniRef90	UHGV-2016403_42	UniRef90_R6DVV5	241.0	0	Predicted Zn peptidase	N/A
eggNOG-mapper	UHGV-2016403_42	1160721.RBI_I01604	144.0	3.30006e-41	N/A	N/A
Pfam	UHGV-2016403_42	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-2016403_42	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-2016403_42	PF06114,COG2856	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2016403_44	PF21227	N/A	N/A	N/A	N/A
PHROG	UHGV-2016403_45	phrog_2523	41.6	0.000000000018	N/A	unknown function
structural_annotation	UHGV-2016403_45	PF05973,TIGR02683,COG4683	N/A	N/A	N/A	N/A
KOfam	UHGV-2016403_46	K23779	51.5	0.000000000000025	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
PHROG	UHGV-2016403_46	phrog_1373	41.7	0.000000000018	transcriptional regulator	transcription regulation
UniRef90	UHGV-2016403_46	UniRef90_UPI00051ABD2F	84.0	4.19e-18	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-2016403_46	1280688.AUJB01000009_gene1936	58.2	0.00000000691	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-2016403_46	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2016403_46	COG1813	N/A	N/A	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	N/A
PHROG	UHGV-2016403_48	phrog_1758	161.7	0	acetyltransferase	other
UniRef90	UHGV-2016403_48	UniRef90_A0A1Y4M8L7	262.0	0	N-acetyltransferase	N/A
eggNOG-mapper	UHGV-2016403_48	272563.CD630_29260	239.0	0	acetyltransferase	N/A
COG	UHGV-2016403_48	COG0454	N/A	N/A	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	N/A
structural_annotation	UHGV-2016403_48	PF13673,MF_02210,NF000360,COG2153	N/A	N/A	N/A	N/A
PHROG	UHGV-2016403_49	phrog_3291	48.2	0.00000000000018	N/A	unknown function
KOfam	UHGV-2016403_50	K14059	154.8	1.4013e-45	int; integrase	N/A
PHROG	UHGV-2016403_50	phrog_1	153.7	1.4013e-45	integrase	integration and excision
UniRef90	UHGV-2016403_50	UniRef90_A0A2Z4QB94	330.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-2016403_50	626523.GCWU000342_00320	98.2	2.55e-20	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-2016403_50	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-2016403_50	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-2016403_50	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-2016403_51	UniRef90_A0A7X8ZV43	132.0	3.09e-35	YwaF family protein	N/A
Pfam	UHGV-2016403_51	PF14808	N/A	N/A	TMEM164 family	TMEM164

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-2016403	Yes	35,106	56	100	1
UHGV-0187094	No	20,327	57	58	1
UHGV-0074670	No	19,999	57	57	1