vOTU vOTU-082571

vOTU: vOTU-082571

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-082571
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00239 → vGENUS-01100 → vSUBGEN-31310 → vOTU-082571
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-2127804
Biosample ID	SAMEA3449285
Genome length (bp)	27,860 bps
CheckV completeness	94.65% (High-quality)
CDS count	48
CDS density	94.64%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	684	Host agreement	80.41
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	20	Host agreement	80

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 94.65)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-2127804_1	UniRef90_A0A374N9Y2	244.0	0	N/A	N/A
Pfam	UHGV-2127804_1	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
structural_annotation	UHGV-2127804_1	PF10651,NF032891,COG5513	N/A	N/A	N/A	N/A
PHROG	UHGV-2127804_2	phrog_1067	133.0	2.1e-39	minor head protein	head and packaging
UniRef90	UHGV-2127804_2	UniRef90_A0A348ZBV6	171.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-2127804_2	1160721.RBI_I01574	129.0	7.72e-30	Prophage endopeptidase tail	N/A
Pfam	UHGV-2127804_2	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-2127804_2	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-2127804_2	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-2127804_2	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
UniRef90	UHGV-2127804_3	UniRef90_A0A1C5W6B6	78.6	0.0000000000000771	Phage-related protein	N/A
eggNOG-mapper	UHGV-2127804_3	1246.JMEA01000006_gene51	67.4	0.000000000161	phage tail	N/A
COG	UHGV-2127804_3	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-2127804_3	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-2127804_4	phrog_23464	258.0	0	N/A	unknown function
eggNOG-mapper	UHGV-2127804_4	665950.HMPREF1025_02660	181.0	2.8026e-45	phage tail tape measure protein	N/A
COG	UHGV-2127804_4	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-2127804_4	COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-2127804_6	phrog_1021	47.8	0.000000000000013	N/A	unknown function
PHROG	UHGV-2127804_7	phrog_885	134.5	6.50001e-40	major tail protein	tail
UniRef90	UHGV-2127804_7	UniRef90_A0A3D3W9F4	160.0	2.8026e-45	CBM_X2 domain-containing protein	N/A
eggNOG-mapper	UHGV-2127804_7	1321814.HMPREF9089_00935	176.0	0	N/A	N/A
structural_annotation	UHGV-2127804_7	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2127804_8	PF12691	N/A	N/A	N/A	N/A
UniRef90	UHGV-2127804_9	UniRef90_UPI001A9B6FBF	161.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-2127804_9	642492.Clole_0747	132.0	7.11e-38	N/A	N/A
structural_annotation	UHGV-2127804_9	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-2127804_10	phrog_1951	93.2	1.6e-27	head-tail adaptor	connector
UniRef90	UHGV-2127804_10	UniRef90_A0A374MZF9	206.0	0	Phage head-tail adapter protein	N/A
eggNOG-mapper	UHGV-2127804_10	1414720.CBYM010000040_gene1649	66.6	0.000000000000704	head-tail adaptor	N/A
COG	UHGV-2127804_10	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-2127804_10	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-2127804_11	phrog_5223	54.8	0.0000000000000013	neck protein	connector
eggNOG-mapper	UHGV-2127804_11	931626.Awo_c31020	48.5	0.00000454	N/A	N/A
NCBIFam	UHGV-2127804_11	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-2127804_11	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-2127804_12	phrog_10	151.6	7.00649e-45	major head protein	head and packaging
UniRef90	UHGV-2127804_12	UniRef90_A0A374N9V9	727.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-2127804_12	1280689.AUJC01000011_gene1521	333.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-2127804_12	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-2127804_12	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-2127804_12	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-2127804_12	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-2127804_13	K01358	121.9	7.3e-36	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-2127804_13	phrog_94	187.4	0	head maturation protease	head and packaging
UniRef90	UHGV-2127804_13	UniRef90_A0A374NBM3	408.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-2127804_13	1203606.HMPREF1526_00979	183.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-2127804_13	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-2127804_13	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-2127804_13	PF00574,MF_00444,NF011091,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-2127804_14	phrog_12	181.6	0	portal protein	head and packaging
UniRef90	UHGV-2127804_14	UniRef90_A0A374NAE1	775.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-2127804_14	626523.GCWU000342_01027	405.0	0	Portal protein	N/A
Pfam	UHGV-2127804_14	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-2127804_14	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-2127804_14	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-2127804_15	phrog_9	393.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-2127804_15	UniRef90_A0A374NB45	983.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-2127804_15	1235793.C809_01917	723.0	0	Phage Terminase	N/A
Pfam	UHGV-2127804_15	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-2127804_15	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-2127804_15	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-2127804_15	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-2127804_16	phrog_1066	115.8	2.1e-34	N/A	unknown function
UniRef90	UHGV-2127804_16	UniRef90_A0A0D0SQQ8	87.0	1.24e-19	N/A	N/A
eggNOG-mapper	UHGV-2127804_16	1203606.HMPREF1526_00982	103.0	2.67e-27	N/A	N/A
PHROG	UHGV-2127804_17	phrog_119	55.2	9.9e-16	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2127804_17	UniRef90_A0A374N9T6	239.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-2127804_17	1235793.C809_01915	120.0	2.54e-33	HNH endonuclease	N/A
COG	UHGV-2127804_17	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
UniRef90	UHGV-2127804_18	UniRef90_A0A374MXG7	101.0	1.48e-25	XRE family transcriptional regulator	N/A
Pfam	UHGV-2127804_18	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2127804_18	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-2127804_21	PF14282,COG5570	N/A	N/A	N/A	N/A
PHROG	UHGV-2127804_23	phrog_8684	95.9	1.3e-28	N/A	unknown function
UniRef90	UHGV-2127804_23	UniRef90_A0A412ULY6	286.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-2127804_23	1458852.A0A059T7V5_9CAUD	71.6	0.0000000000000705	YopX protein	N/A
Pfam	UHGV-2127804_23	PF09643	N/A	N/A	YopX protein	YopX
structural_annotation	UHGV-2127804_23	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-2127804_24	phrog_2118	118.7	4.9e-35	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2127804_24	UniRef90_A0A374DVG7	239.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-2127804_24	610130.Closa_0730	149.0	5.60519e-45	HNH endonuclease	N/A
Pfam	UHGV-2127804_24	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-2127804_24	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-2127804_24	TIGR02646,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-2127804_26	phrog_824	137.8	3.69999e-41	N/A	unknown function
UniRef90	UHGV-2127804_26	UniRef90_A0A374MXE9	253.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-2127804_26	1235792.C808_00622	131.0	2.4e-36	VRR_NUC	N/A
Pfam	UHGV-2127804_26	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-2127804_26	PF08774	N/A	N/A	N/A	N/A
KOfam	UHGV-2127804_27	K02315	136.8	1.8e-40	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-2127804_27	phrog_50	133.3	1.9e-39	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2127804_27	UniRef90_A0A374MYR7	554.0	0	IstB_IS21 domain-containing protein	N/A
eggNOG-mapper	UHGV-2127804_27	1507.HMPREF0262_00302	200.0	0	Bacterial dnaA protein	N/A
Pfam	UHGV-2127804_27	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-2127804_27	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-2127804_27	PF01695,MF_01158,NF005378,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-2127804_28	phrog_2562	143.3	2.10055e-42	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2127804_28	UniRef90_A0A374NA85	551.0	0	N/A	N/A
eggNOG-mapper	UHGV-2127804_28	1235790.C805_00030	149.0	2.05e-40	N/A	N/A
Pfam	UHGV-2127804_28	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
COG	UHGV-2127804_28	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-2127804_28	PF14297	N/A	N/A	N/A	N/A
PHROG	UHGV-2127804_29	phrog_398	208.3	0	N/A	unknown function
UniRef90	UHGV-2127804_29	UniRef90_UPI001E5E0390	190.0	0	putative HNHc nuclease	N/A
eggNOG-mapper	UHGV-2127804_29	293826.Amet_2584	181.0	0	Putative HNHc nuclease	N/A
Pfam	UHGV-2127804_29	PF16784	N/A	N/A	Putative HNHc nuclease	HNHc_6
structural_annotation	UHGV-2127804_29	PF16784	N/A	N/A	N/A	N/A
KOfam	UHGV-2127804_30	K06167	51.6	0.000000000000013	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	N/A
PHROG	UHGV-2127804_30	phrog_392	125.0	7.1e-37	metal-dependent hydrolase	other
UniRef90	UHGV-2127804_30	UniRef90_A0A373XYI8	444.0	0	MBL fold metallo-hydrolase	N/A
eggNOG-mapper	UHGV-2127804_30	665956.HMPREF1032_03101	165.0	0	May be involved in the transport of PQQ or its precursor to the periplasm	N/A
Pfam	UHGV-2127804_30	PF12706	N/A	N/A	Beta-lactamase superfamily domain	Lactamase_B_2
COG	UHGV-2127804_30	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
structural_annotation	UHGV-2127804_30	PF12706,MF_01818,TIGR03307,COG1234	N/A	N/A	N/A	N/A
KOfam	UHGV-2127804_31	K07455	202.2	0	recT; recombination protein RecT	N/A
PHROG	UHGV-2127804_31	phrog_148	217.1	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2127804_31	UniRef90_A0A374N9W0	529.0	0	Recombinase	N/A
eggNOG-mapper	UHGV-2127804_31	428127.EUBDOL_01509	281.0	0	RecT family	N/A
Pfam	UHGV-2127804_31	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-2127804_31	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-2127804_31	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-2127804_31	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-2127804_32	phrog_674	155.4	0	N/A	unknown function
UniRef90	UHGV-2127804_32	UniRef90_A0A374N9T8	559.0	0	N/A	N/A
eggNOG-mapper	UHGV-2127804_32	1408437.JNJN01000039_gene373	187.0	0	N/A	N/A
Pfam	UHGV-2127804_32	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-2127804_32	PF07083	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2127804_33	PF04570,COG2075	N/A	N/A	N/A	N/A
KOfam	UHGV-2127804_39	K15773	48.5	0.00000000000018	hipB; HTH-type transcriptional regulator / antitoxin HipB	N/A
PHROG	UHGV-2127804_39	phrog_3	48.0	0.00000000000053	transcriptional repressor	transcription regulation
UniRef90	UHGV-2127804_39	UniRef90_A0A374N3U7	129.0	4.44e-38	XRE family transcriptional regulator	N/A
Pfam	UHGV-2127804_39	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2127804_39	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-2127804_39	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-2127804_40	phrog_3773	49.4	0.000000000000071	N/A	unknown function
structural_annotation	UHGV-2127804_40	PF01423,MF_00257,NF041667	N/A	N/A	N/A	N/A
KOfam	UHGV-2127804_42	K07482	162.3	0	K07482; transposase, IS30 family	N/A
PHROG	UHGV-2127804_42	phrog_4646	201.3	0	transposase	integration and excision
UniRef90	UHGV-2127804_42	UniRef90_A0A845N1X2	856.0	0	IS30 family transposase	N/A
eggNOG-mapper	UHGV-2127804_42	1410631.JHWZ01000001_gene1160	442.0	0	N/A	N/A
Pfam	UHGV-2127804_42	PF13936	N/A	N/A	Helix-turn-helix domain	HTH_38
NCBIFam	UHGV-2127804_42	NF033563.0	N/A	N/A	IS30 family transposase	N/A
COG	UHGV-2127804_42	COG2826	N/A	N/A	Transposase and inactivated derivatives, IS30 family	N/A
structural_annotation	UHGV-2127804_42	PF07592,PF04218,NF033563,COG2826	N/A	N/A	N/A	N/A
UniRef90	UHGV-2127804_44	UniRef90_A0A374DVN3	161.0	0	DNA-binding protein	N/A
eggNOG-mapper	UHGV-2127804_44	1219626.HMPREF1639_07045	47.8	0.00000322	N/A	N/A
UniRef90	UHGV-2127804_45	UniRef90_A0A373XLN2	154.0	1.4013e-45	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-2127804_45	1408823.AXUS01000025_gene2653	59.3	0.0000000061	N/A	N/A
structural_annotation	UHGV-2127804_45	PF05339,NF007257,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-2127804_46	phrog_1914	145.8	2.49431e-43	N/A	unknown function
UniRef90	UHGV-2127804_46	UniRef90_A0A374NDM7	330.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-2127804_46	1160721.RBI_I01604	171.0	0	N/A	N/A
Pfam	UHGV-2127804_46	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-2127804_46	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-2127804_46	PF06114,COG2856	N/A	N/A	N/A	N/A
UniRef90	UHGV-2127804_47	UniRef90_A0A374DTF3	102.0	1.15e-24	N/A	N/A
KOfam	UHGV-2127804_48	K14059	222.4	0	int; integrase	N/A
PHROG	UHGV-2127804_48	phrog_1	212.5	0	integrase	integration and excision
UniRef90	UHGV-2127804_48	UniRef90_UPI0008345DF0	278.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-2127804_48	693746.OBV_01970	181.0	0	Phage integrase family	N/A
Pfam	UHGV-2127804_48	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-2127804_48	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-2127804_48	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-2127804_48	PF00589,PF13495,MF_02055,TIGR02225,COG4974	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-2127804	Yes	27,860	40	95	1
UHGV-0099065	No	13,546	42	55	1
UHGV-1495214	No	13,546	42	55	1