vOTU vOTU-082576

vOTU: vOTU-082576

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-082576
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00373 → vGENUS-00237 → vSUBGEN-00275 → vOTU-082576
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → SFJ001
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0173631
Biosample ID	N/A
Genome length (bp)	40,494 bps
CheckV completeness	91.45% (High-quality)
CDS count	61
CDS density	94.29%
tRNA count	3
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → SFJ001	Total connections	71	Host agreement	85.92
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae	Total connections	2	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 91.45)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0173631_1	K21523	47.0	0.00000000000012	gp17; terminase, large subunit [EC:3.1.-.-]	N/A
PHROG	UHGV-0173631_1	phrog_2	101.2	1.7e-29	terminase large subunit	head and packaging
UniRef90	UHGV-0173631_1	UniRef90_UPI001F401ABC	654.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-0173631_1	316274.Haur_1384	144.0	5.15e-35	N/A	N/A
Pfam	UHGV-0173631_1	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0173631_1	COG4373	N/A	N/A	Mu-like prophage FluMu protein gp28	N/A
structural_annotation	UHGV-0173631_1	PF03354,PF17289,MF_04146,TIGR01547,COG4373	N/A	N/A	N/A	N/A
PHROG	UHGV-0173631_2	phrog_3287	177.8	0	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0173631_2	665956.HMPREF1032_03917	669.0	0	N/A	N/A
structural_annotation	UHGV-0173631_2	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
PHROG	UHGV-0173631_5	phrog_35275	59.1	3.1e-17	N/A	unknown function
eggNOG-mapper	UHGV-0173631_5	1226322.HMPREF1545_03846	69.7	0.0000000000707	N/A	N/A
PHROG	UHGV-0173631_6	phrog_24113	55.8	7e-16	N/A	unknown function
eggNOG-mapper	UHGV-0173631_6	1226322.HMPREF1545_03847	50.1	0.0000065	N/A	N/A
structural_annotation	UHGV-0173631_6	PF11133,COG5471	N/A	N/A	N/A	N/A
PHROG	UHGV-0173631_7	phrog_371	138.2	3.89995e-41	major head protein	head and packaging
UniRef90	UHGV-0173631_7	UniRef90_A0A1Y4TDW7	474.0	0	Mu-like_gpT domain-containing protein	N/A
eggNOG-mapper	UHGV-0173631_7	1226322.HMPREF1545_03848	285.0	0	N/A	N/A
Pfam	UHGV-0173631_7	PF10124	N/A	N/A	Mu-like prophage major head subunit gpT	Mu-like_gpT
structural_annotation	UHGV-0173631_7	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0173631_8	phrog_156	226.1	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0173631_8	693746.OBV_23930	457.0	0	N/A	N/A
structural_annotation	UHGV-0173631_8	PF12236,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
PHROG	UHGV-0173631_9	phrog_13046	42.9	0.0000000000023	N/A	unknown function
eggNOG-mapper	UHGV-0173631_9	693746.OBV_23880	107.0	2.65e-26	N/A	N/A
structural_annotation	UHGV-0173631_9	PF20387	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0173631_10	665956.HMPREF1032_03918	115.0	2.22e-26	prophage protein Bartonella henselae str. Houston-1 gi 49237922 emb CAF27125.1	N/A
PHROG	UHGV-0173631_11	phrog_15594	81.9	6.2e-24	N/A	unknown function
eggNOG-mapper	UHGV-0173631_11	1118055.CAGU01000013_gene763	65.1	0.00000000000231	N/A	N/A
structural_annotation	UHGV-0173631_11	PF16640,TIGR04488	N/A	N/A	N/A	N/A
PHROG	UHGV-0173631_12	phrog_31538	54.1	0.0000000000000032	N/A	unknown function
PHROG	UHGV-0173631_13	phrog_13589	205.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0173631_13	411460.RUMTOR_01324	237.0	0	N/A	N/A
eggNOG-mapper	UHGV-0173631_14	411460.RUMTOR_01324	57.4	0.000000304	N/A	N/A
KOfam	UHGV-0173631_16	K07273	200.2	0	acm; lysozyme	N/A
PHROG	UHGV-0173631_16	phrog_291	154.4	1.4013e-45	endolysin	lysis
UniRef90	UHGV-0173631_16	UniRef90_UPI00164A97A0	200.0	0	glycoside hydrolase family 25 protein	N/A
eggNOG-mapper	UHGV-0173631_16	411473.RUMCAL_02121	155.0	9.60002e-41	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0173631_16	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0173631_16	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0173631_16	PF01183,PF05194,COG3757	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0173631_17	97138.C820_00248	62.4	0.00000000000891	N/A	N/A
PHROG	UHGV-0173631_18	phrog_1129	78.0	8.2e-23	holin	lysis
UniRef90	UHGV-0173631_18	UniRef90_A0A3R5ZDU6	134.0	3.56e-39	Holin	N/A
eggNOG-mapper	UHGV-0173631_18	1256908.HMPREF0373_00463	127.0	3.31e-37	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0173631_18	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0173631_18	PF06946	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0173631_19	PF07638,MF_00674,TIGR02954,COG1846	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0173631_22	PF00210,MF_01441,NF011597,COG1528	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0173631_24	1506994.JNLQ01000004_gene3618	210.0	0	N/A	N/A
UniRef90	UHGV-0173631_25	UniRef90_A0A4R1R5G7	77.8	3.22e-18	Anaerobic ribonucleoside-triphosphate reductase-like protein	N/A
eggNOG-mapper	UHGV-0173631_25	658088.HMPREF0987_00997	76.3	2.21e-18	Anaerobic ribonucleoside-triphosphate reductase	N/A
Pfam	UHGV-0173631_25	PF13597	N/A	N/A	Anaerobic ribonucleoside-triphosphate reductase	NRDD
COG	UHGV-0173631_25	COG1328	N/A	N/A	Anaerobic ribonucleoside-triphosphate reductase	N/A
KOfam	UHGV-0173631_26	K14059	98.8	8.6e-29	int; integrase	N/A
PHROG	UHGV-0173631_26	phrog_1	105.8	5.9e-31	integrase	integration and excision
UniRef90	UHGV-0173631_26	UniRef90_UPI001897E1C8	154.0	1.64e-39	site-specific integrase	N/A
eggNOG-mapper	UHGV-0173631_26	1410633.JHWR01000028_gene773	105.0	1.81e-22	Phage integrase family	N/A
Pfam	UHGV-0173631_26	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0173631_26	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0173631_26	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
Pfam	UHGV-0173631_27	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0173631_27	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-0173631_27	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0173631_28	1268072.PSAB_08410	53.1	0.00000187	N/A	N/A
structural_annotation	UHGV-0173631_28	PF10358	N/A	N/A	N/A	N/A
KOfam	UHGV-0173631_30	K22299	54.7	0.0000000000000023	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0173631_30	phrog_8	48.3	0.00000000000022	transcriptional regulator	transcription regulation
UniRef90	UHGV-0173631_30	UniRef90_UPI0005E915F7	79.3	2.71e-16	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0173631_30	457421.CBFG_03225	75.1	0.00000000000000149	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-0173631_30	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0173631_30	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0173631_30	PF13560,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0173631_31	UniRef90_R5J287	74.3	5.62e-16	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0173631_31	768486.EHR_02785	66.6	0.000000000000104	N/A	N/A
Pfam	UHGV-0173631_31	PF05339	N/A	N/A	N/A	DUF739
structural_annotation	UHGV-0173631_31	PF05339,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0173631_32	phrog_463	213.7	0	anti-repressor	transcription regulation
UniRef90	UHGV-0173631_32	UniRef90_UPI00137B411D	266.0	0	ORF6C domain-containing protein	N/A
eggNOG-mapper	UHGV-0173631_32	411490.ANACAC_00813	185.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-0173631_32	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0173631_32	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-0173631_32	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0173631_32	PF10552,PF02498,TIGR02681,COG3617	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0173631_33	PF10743,NF033787	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0173631_34	596152.DesU5LDRAFT_1910	88.6	5.21e-19	N/A	N/A
structural_annotation	UHGV-0173631_34	PF03787,TIGR02581,COG1604	N/A	N/A	N/A	N/A
PHROG	UHGV-0173631_40	phrog_253	115.2	5.6e-34	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0173631_40	UniRef90_E2ZNS5	150.0	8.40779e-44	Siphovirus Gp157	N/A
eggNOG-mapper	UHGV-0173631_40	748224.HMPREF9436_03356	150.0	1.4013e-44	Siphovirus Gp157	N/A
Pfam	UHGV-0173631_40	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0173631_40	PF05565	N/A	N/A	N/A	N/A
PHROG	UHGV-0173631_41	phrog_7838	135.0	5.70001e-40	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0173631_41	UniRef90_A0A8D9UGW3	230.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-0173631_41	742767.HMPREF9456_02052	183.0	0	N/A	N/A
structural_annotation	UHGV-0173631_41	PF04098,TIGR00607,COG4380	N/A	N/A	N/A	N/A
PHROG	UHGV-0173631_42	phrog_72	62.8	4.9e-18	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0173631_42	UniRef90_UPI000C7BF263	169.0	0	recombination protein NinB	N/A
eggNOG-mapper	UHGV-0173631_42	445972.ANACOL_01825	136.0	1.3e-38	N/A	N/A
structural_annotation	UHGV-0173631_42	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-0173631_43	phrog_7566	82.9	2.7e-24	N/A	unknown function
UniRef90	UHGV-0173631_43	UniRef90_A0A8D9UHC0	79.3	4.26e-17	Recombination enhancement function protein nuclease	N/A
eggNOG-mapper	UHGV-0173631_43	693746.OBV_25470	89.4	1.46e-21	N/A	N/A
KOfam	UHGV-0173631_44	K03111	117.5	2e-34	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0173631_44	phrog_44	119.5	3.3e-35	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0173631_44	UniRef90_R6I6X7	129.0	9.68e-36	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0173631_44	748224.HMPREF9436_03359	121.0	2.13e-33	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0173631_44	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0173631_44	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0173631_44	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0173631_44	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0173631_44	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0173631_45	phrog_270	120.4	2.2e-35	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0173631_45	UniRef90_A0A3A6E2X3	103.0	2.07e-23	N/A	N/A
eggNOG-mapper	UHGV-0173631_45	768710.DesyoDRAFT_5236	97.8	1.09e-21	DnaD domain protein	N/A
Pfam	UHGV-0173631_45	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-0173631_45	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0173631_45	PF05584,MF_01819,TIGR01610,COG3355	N/A	N/A	N/A	N/A
KOfam	UHGV-0173631_46	K02314	230.2	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0173631_46	phrog_19	218.4	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0173631_46	UniRef90_UPI001F1C052D	434.0	0	replicative DNA helicase	N/A
eggNOG-mapper	UHGV-0173631_46	1203606.HMPREF1526_01325	163.0	6.31986e-43	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-0173631_46	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0173631_46	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0173631_46	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0173631_46	PF03796,PF00772,MF_04155,NF005240,COG0305	N/A	N/A	N/A	N/A
KOfam	UHGV-0173631_47	K01160	45.1	0.0000000000027	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0173631_47	phrog_1682	72.0	1e-20	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0173631_47	UniRef90_UPI0009406B47	97.4	1.23e-23	endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0173631_47	60520.HR47_13580	93.6	6.86e-23	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
COG	UHGV-0173631_47	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0173631_47	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0173631_48	phrog_2245	81.5	1.1e-23	nucleoside triphosphate pyrophosphohydrolase	other
eggNOG-mapper	UHGV-0173631_48	1499683.CCFF01000005_gene41	60.8	0.000000000072	N/A	N/A
structural_annotation	UHGV-0173631_48	NF001611,COG1694	N/A	N/A	N/A	N/A
PHROG	UHGV-0173631_49	phrog_111	165.9	0	DNA methyltransferase	other
UniRef90	UHGV-0173631_49	UniRef90_UPI000B356992	219.0	0	adenine methyltransferase	N/A
eggNOG-mapper	UHGV-0173631_49	760568.Desku_0784	206.0	0	DNA N-6-adenine-methyltransferase	N/A
PADLOC	UHGV-0173631_49	oMTase_00015	184.3	0	orphan methyltransferase	RM
Pfam	UHGV-0173631_49	PF05869	N/A	N/A	DNA N-6-adenine-methyltransferase (Dam)	Dam
structural_annotation	UHGV-0173631_49	PF05869,MF_03187,TIGR01712,COG2263	N/A	N/A	N/A	N/A
PHROG	UHGV-0173631_50	phrog_236	83.9	4.2e-24	nucleotide kinase	other
UniRef90	UHGV-0173631_50	UniRef90_A0A8D9PGN7	82.0	3.63e-17	Nucelotide kinase	N/A
eggNOG-mapper	UHGV-0173631_50	227720.Q858M9_9CAUD	65.1	0.00000000000665	N/A	N/A
Pfam	UHGV-0173631_50	PF11753	N/A	N/A	N/A	DUF3310
PHROG	UHGV-0173631_52	phrog_757	224.2	0	DNA methyltransferase	other
UniRef90	UHGV-0173631_52	UniRef90_UPI0006A41431	248.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0173631_52	1235790.C805_00032	270.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0173631_52	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0173631_52	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0173631_53	phrog_1233	54.7	0.0000000000000021	N/A	unknown function
UniRef90	UHGV-0173631_53	UniRef90_A0A116RB38	56.6	0.0000000235	N/A	N/A
eggNOG-mapper	UHGV-0173631_53	764299.STRIC_2132	51.2	0.000000473	N/A	N/A
Pfam	UHGV-0173631_53	PF10263	N/A	N/A	SprT-like family	SprT-like
structural_annotation	UHGV-0173631_53	PF06114	N/A	N/A	N/A	N/A
PHROG	UHGV-0173631_58	phrog_6721	292.6	0	N/A	unknown function
eggNOG-mapper	UHGV-0173631_58	665950.HMPREF1025_01974	266.0	0	N/A	N/A
structural_annotation	UHGV-0173631_58	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
PHROG	UHGV-0173631_60	phrog_36	75.0	1.3e-21	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0173631_60	469618.FVAG_00790	50.4	0.00000549	N/A	N/A
Pfam	UHGV-0173631_60	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-0173631_60	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0173631_60	PF04545,MF_00674,NF009180,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-0173631_61	phrog_5070	92.0	4.6e-27	N/A	unknown function
structural_annotation	UHGV-0173631_61	MF_01691,NF040481	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0173631	Yes	40,494	55	91	1
UHGV-0210853	No	27,696	55	63	1