vOTU vOTU-082582

vOTU: vOTU-082582

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-082582
Number of genomes	2
Taxonomy (ICTV)	Bacteria → Firmicutes
Taxonomy (UHGV)	vFAM-00025 → vSUBFAM-03061 → vGENUS-14462 → vSUBGEN-24301 → vOTU-082582
Host lineage	Bacteria → Firmicutes → Bacilli → RF39 → UBA660
Host range breadth	Family
Lifestyle	temperate (Evidence: integrase)

Representative genome
Genome ID	UHGV-0012925
Biosample ID	SAMEA4765905
Genome length (bp)	38,744 bps
CheckV completeness	99.90% (High-quality)
CDS count	69
CDS density	94.24%
tRNA count	1
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → RF39 → UBA660	Total connections	6	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes	Total connections	3	Host agreement	66.67

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0012925_1	phrog_7566	75.5	6.3e-22	N/A	unknown function
UniRef90	UHGV-0012925_1	UniRef90_A0A371ATG2	61.2	0.00000000285	Phosphoenolpyruvate carboxykinase	N/A
eggNOG-mapper	UHGV-0012925_1	1118057.CAGX01000020_gene1648	52.4	0.000000862	N/A	N/A
KOfam	UHGV-0012925_5	K07273	166.0	0	acm; lysozyme	N/A
PHROG	UHGV-0012925_5	phrog_291	142.3	4.1002e-42	endolysin	lysis
UniRef90	UHGV-0012925_5	UniRef90_A0A416S3Y6	204.0	0	LysM peptidoglycan-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0012925_5	398512.JQKC01000068_gene4270	204.0	0	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0012925_5	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-0012925_5	PF08230	N/A	N/A	CW_7 repeat	CW_7
Pfam	UHGV-0012925_5	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-0012925_5	COG0810	N/A	N/A	Periplasmic protein TonB, links inner and outer membranes	N/A
structural_annotation	UHGV-0012925_5	PF01183,PF01476,TIGR02899,NF007360,COG3757,COG1388	N/A	N/A	N/A	N/A
PHROG	UHGV-0012925_6	phrog_199	62.6	5.2e-18	holin	lysis
UniRef90	UHGV-0012925_6	UniRef90_UPI001E4FA8BC	57.4	0.000000035	phage holin family protein	N/A
eggNOG-mapper	UHGV-0012925_6	1280689.AUJC01000003_gene982	52.4	0.000000682	Bacteriophage holin family	N/A
Pfam	UHGV-0012925_6	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0012925_6	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0012925_6	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0012925_6	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-0012925_7	phrog_23208	63.7	1.8e-18	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0012925_7	476272.RUMHYD_00002	79.0	0.00000000000232	N/A	N/A
eggNOG-mapper	UHGV-0012925_8	658659.HMPREF0983_03295	98.6	3.82e-18	N/A	N/A
Pfam	UHGV-0012925_8	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
structural_annotation	UHGV-0012925_8	PF05113,TIGR01665,NF041249,COG4379	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0012925_9	PF20458,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0012925_10	phrog_1535	120.2	0	tail length tape measure protein	tail
UniRef90	UHGV-0012925_10	UniRef90_A0A810PX76	86.3	0.0000000000000744	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0012925_10	1140002.I570_01433	94.4	5.96e-17	SLT domain	N/A
COG	UHGV-0012925_10	COG3953	N/A	N/A	SLT domain protein	N/A
PHROG	UHGV-0012925_11	phrog_706	132.2	3.5e-39	N/A	unknown function
UniRef90	UHGV-0012925_11	UniRef90_A0A1V6D632	153.0	9.52883e-44	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0012925_11	645991.Sgly_0348	153.0	1.12104e-44	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0012925_11	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0012925_11	PF06854	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0012925_12	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0012925_13	phrog_3099	80.9	1.7e-23	N/A	unknown function
eggNOG-mapper	UHGV-0012925_13	1304866.K413DRAFT_3043	75.5	0.0000000000000105	N/A	N/A
structural_annotation	UHGV-0012925_13	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0012925_14	phrog_3266	111.8	4e-33	tail completion	connector
UniRef90	UHGV-0012925_14	UniRef90_A0A846K5J6	94.7	5.77e-22	Chloramphenicol resistance protein	N/A
eggNOG-mapper	UHGV-0012925_14	536233.CLO_0890	96.7	1.71e-23	N/A	N/A
structural_annotation	UHGV-0012925_14	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0012925_15	phrog_556	57.4	2.2e-16	minor head protein	head and packaging
UniRef90	UHGV-0012925_15	UniRef90_F2JQ09	80.1	3.71e-16	Minor capsid	N/A
eggNOG-mapper	UHGV-0012925_15	642492.Clole_0824	80.1	6.23e-17	Minor capsid protein	N/A
PHROG	UHGV-0012925_16	phrog_3366	67.0	3.4e-19	N/A	unknown function
structural_annotation	UHGV-0012925_16	PF20536	N/A	N/A	N/A	N/A
PHROG	UHGV-0012925_17	phrog_541	97.6	9.6e-29	head-tail adaptor	connector
eggNOG-mapper	UHGV-0012925_17	545697.HMPREF0216_02851	72.0	0.0000000000000169	N/A	N/A
PHROG	UHGV-0012925_19	phrog_422	211.4	0	major head protein	head and packaging
UniRef90	UHGV-0012925_19	UniRef90_W0U896	217.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0012925_19	1123263.AUKY01000051_gene1080	241.0	0	N/A	N/A
structural_annotation	UHGV-0012925_19	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
UniRef90	UHGV-0012925_20	UniRef90_UPI00117868A2	108.0	4.29e-26	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0012925_20	545697.HMPREF0216_02848	76.3	0.0000000000000138	Phage minor structural protein GP20	N/A
Pfam	UHGV-0012925_20	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
PHROG	UHGV-0012925_21	phrog_918	118.0	3e-35	N/A	unknown function
UniRef90	UHGV-0012925_21	UniRef90_UPI00115A7D93	125.0	5.79e-36	N/A	N/A
eggNOG-mapper	UHGV-0012925_21	1321782.HMPREF1986_00359	124.0	4.07e-36	N/A	N/A
Pfam	UHGV-0012925_21	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-0012925_21	PF19791	N/A	N/A	N/A	N/A
PHROG	UHGV-0012925_22	phrog_872	84.7	1.2e-24	N/A	unknown function
UniRef90	UHGV-0012925_22	UniRef90_UPI0009DC16A7	129.0	1.87e-37	N/A	N/A
eggNOG-mapper	UHGV-0012925_22	1280692.AUJL01000027_gene2162	128.0	9.8e-38	N/A	N/A
Pfam	UHGV-0012925_22	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-0012925_22	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-0012925_22	PF11195	N/A	N/A	N/A	N/A
PHROG	UHGV-0012925_24	phrog_581	219.2	0	minor head protein	head and packaging
UniRef90	UHGV-0012925_24	UniRef90_R5XZV2	203.0	0	Protein gp4	N/A
eggNOG-mapper	UHGV-0012925_24	642492.Clole_0816	136.0	1.53e-31	N/A	N/A
Pfam	UHGV-0012925_24	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0012925_24	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0012925_24	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0012925_25	phrog_533	286.7	0	portal protein	head and packaging
UniRef90	UHGV-0012925_25	UniRef90_R6Y8H1	451.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0012925_25	545697.HMPREF0216_02845	313.0	0	N/A	N/A
Pfam	UHGV-0012925_25	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0012925_25	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0012925_26	K06909	192.6	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0012925_26	phrog_10250	107.5	8.3e-32	N/A	unknown function
UniRef90	UHGV-0012925_26	UniRef90_A0A3B8SL24	723.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0012925_26	428127.EUBDOL_01229	540.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0012925_26	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
NCBIFam	UHGV-0012925_26	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0012925_26	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0012925_26	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
Pfam	UHGV-0012925_29	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
structural_annotation	UHGV-0012925_29	PF04545,MF_00674,NF008895,COG1595	N/A	N/A	N/A	N/A
PHROG	UHGV-0012925_30	phrog_388	41.1	0.0000000000014	nucleotidyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0012925_30	UniRef90_A0A8D9UHX4	78.6	0.000000000000271	RNA repair pathway DNA polymerase beta family	N/A
eggNOG-mapper	UHGV-0012925_30	498761.HM1_0723	55.1	0.00000553	Predicted nucleotidyltransferase	N/A
structural_annotation	UHGV-0012925_30	PF10127,NF000079,COG3541	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0012925_31	PF09871,TIGR00739	N/A	N/A	N/A	N/A
PHROG	UHGV-0012925_35	phrog_11947	50.2	0.000000000000042	N/A	unknown function
Pfam	UHGV-0012925_41	PF07453	N/A	N/A	NUMOD1 domain	NUMOD1
structural_annotation	UHGV-0012925_41	PF07453	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0012925_45	PF01485	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0012925_47	718252.FP2_01040	83.6	8.05e-18	N/A	N/A
structural_annotation	UHGV-0012925_47	PF05772,NF007281	N/A	N/A	N/A	N/A
KOfam	UHGV-0012925_49	K03111	135.4	6.50001e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0012925_49	phrog_44	145.9	2.29813e-43	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0012925_49	UniRef90_A0A350H2L8	147.0	1.41952e-42	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0012925_49	148814.JI66_07160	125.0	8.03e-35	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0012925_49	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0012925_49	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0012925_49	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0012925_49	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0012925_49	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0012925_53	phrog_4601	46.1	0.00000000000075	N/A	unknown function
PHROG	UHGV-0012925_54	phrog_1934	137.1	5.90003e-41	N/A	unknown function
UniRef90	UHGV-0012925_54	UniRef90_UPI001C10229F	127.0	5.57e-35	N/A	N/A
eggNOG-mapper	UHGV-0012925_54	445972.ANACOL_00149	86.7	8.69e-20	COG NOG19595 non supervised orthologous group	N/A
Pfam	UHGV-0012925_54	PF11672	N/A	N/A	zinc-finger-containing domain	DUF3268
structural_annotation	UHGV-0012925_54	PF11672	N/A	N/A	N/A	N/A
PHROG	UHGV-0012925_55	phrog_392	129.7	2.9e-38	metal-dependent hydrolase	other
UniRef90	UHGV-0012925_55	UniRef90_A0A353JB44	345.0	0	Lactamase_B domain-containing protein	N/A
eggNOG-mapper	UHGV-0012925_55	665956.HMPREF1032_03101	203.0	0	May be involved in the transport of PQQ or its precursor to the periplasm	N/A
Pfam	UHGV-0012925_55	PF12706	N/A	N/A	Beta-lactamase superfamily domain	Lactamase_B_2
COG	UHGV-0012925_55	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
structural_annotation	UHGV-0012925_55	PF12706,MF_01818,TIGR03307,COG1234	N/A	N/A	N/A	N/A
PHROG	UHGV-0012925_56	phrog_2760	189.8	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0012925_56	UniRef90_A0A353JB43	396.0	0	Phage recombination protein Bet	N/A
eggNOG-mapper	UHGV-0012925_56	526218.Sterm_1235	196.0	0	Phage recombination protein Bet	N/A
Pfam	UHGV-0012925_56	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0012925_56	TIGR01913.1	N/A	N/A	phage recombination protein Bet	N/A
COG	UHGV-0012925_56	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0012925_56	PF03837,TIGR01913,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-0012925_57	phrog_674	93.5	2.3e-27	N/A	unknown function
UniRef90	UHGV-0012925_57	UniRef90_UPI0019159DFB	115.0	4.8e-27	N/A	N/A
eggNOG-mapper	UHGV-0012925_57	1408437.JNJN01000039_gene373	117.0	2.2e-28	N/A	N/A
Pfam	UHGV-0012925_57	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-0012925_57	PF07083	N/A	N/A	N/A	N/A
UniRef90	UHGV-0012925_58	UniRef90_UPI00164C43FE	59.3	0.00000000034	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0012925_58	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-0012925_58	PF14090,NF040939,COG4738	N/A	N/A	N/A	N/A
KOfam	UHGV-0012925_60	K02086	47.4	0.00000000000019	dnaD; DNA replication protein	N/A
PHROG	UHGV-0012925_60	phrog_5708	168.7	0	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0012925_60	UniRef90_A0A1H0YQC4	132.0	3.6e-33	DnaD and phage-associated domain-containing protein	N/A
eggNOG-mapper	UHGV-0012925_60	1123318.KB904586_gene527	115.0	2.32e-27	DnaD domain protein	N/A
Pfam	UHGV-0012925_60	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-0012925_60	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
COG	UHGV-0012925_60	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0012925_60	PF09524,PF09681,TIGR02220,TIGR01714	N/A	N/A	N/A	N/A
PHROG	UHGV-0012925_61	phrog_989	44.5	0.0000000000016	N/A	unknown function
KOfam	UHGV-0012925_66	K01356	100.0	3.9e-29	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0012925_66	phrog_4	97.2	2.4e-28	transcriptional repressor	transcription regulation
UniRef90	UHGV-0012925_66	UniRef90_A0A2G5NUP7	148.0	3.69004e-41	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0012925_66	1321820.HMPREF1983_00958	131.0	5.26e-35	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0012925_66	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0012925_66	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0012925_66	PF00717,PF01381,MF_00015,TIGR00498,COG2932	N/A	N/A	N/A	N/A
KOfam	UHGV-0012925_67	K07449	122.8	2.6e-36	K07449; similar to archaeal holliday junction resolvase and Mrr protein	N/A
PHROG	UHGV-0012925_67	phrog_13700	53.7	0.0000000000000013	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0012925_67	UniRef90_R9KQA1	149.0	1.53e-37	Ftsk_gamma domain-containing protein	N/A
eggNOG-mapper	UHGV-0012925_67	397290.C810_01426	149.0	2.56e-38	Restriction endonuclease	N/A
PADLOC	UHGV-0012925_67	ZorD1_00005	57.1	1.8e-16	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
Pfam	UHGV-0012925_67	PF09397	N/A	N/A	Ftsk gamma domain	FtsK_gamma
Pfam	UHGV-0012925_67	PF04471	N/A	N/A	Restriction endonuclease	Mrr_cat
Pfam	UHGV-0012925_67	PF09851	N/A	N/A	Short C-terminal domain	SHOCT
COG	UHGV-0012925_67	COG1674	N/A	N/A	DNA segregation ATPase FtsK/SpoIIIE or related protein	N/A
KOfam	UHGV-0012925_68	K14059	187.2	0	int; integrase	N/A
PHROG	UHGV-0012925_68	phrog_1	159.7	0	integrase	integration and excision
UniRef90	UHGV-0012925_68	UniRef90_R7IG47	389.0	0	Putative phage integrase	N/A
eggNOG-mapper	UHGV-0012925_68	1231377.C426_0909	95.1	1.05e-18	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0012925_68	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0012925_68	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0012925_68	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0012925_68	PF00589,PF14659,PF14657,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0012925	Yes	38,744	27	100	1
UHGV-0009276	No	38,744	27	100	1