vOTU vOTU-082636

vOTU: vOTU-082636

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-082636
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Agathobacter → ERR7738532_bin.160
Taxonomy (UHGV)	vFAM-00010 → vSUBFAM-00172 → vGENUS-00333 → vSUBGEN-20961 → vOTU-082636
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Copromonas
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0024297
Biosample ID	N/A
Genome length (bp)	46,680 bps
CheckV completeness	99.90% (High-quality)
CDS count	80
CDS density	88.78%
tRNA count	2
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Copromonas	Total connections	110	Host agreement	90
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Agathobacter → ERR7738532_bin.160	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0024297_1	phrog_581	230.9	0	minor head protein	head and packaging
UniRef90	UHGV-0024297_1	UniRef90_A0A1C6CDG2	612.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0024297_1	476272.RUMHYD_01761	395.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0024297_1	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0024297_1	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0024297_1	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0024297_2	phrog_1048	161.3	0	N/A	unknown function
UniRef90	UHGV-0024297_2	UniRef90_A0A416L221	325.0	0	N/A	N/A
eggNOG-mapper	UHGV-0024297_2	457412.RSAG_01107	253.0	0	N/A	N/A
Pfam	UHGV-0024297_2	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-0024297_2	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-0024297_2	PF11195	N/A	N/A	N/A	N/A
Pfam	UHGV-0024297_3	PF13229	N/A	N/A	Right handed beta helix region	Beta_helix
PHROG	UHGV-0024297_4	phrog_16164	143.5	0	N/A	unknown function
PHROG	UHGV-0024297_5	phrog_533	276.4	0	portal protein	head and packaging
UniRef90	UHGV-0024297_5	UniRef90_A0A1C6CDM8	943.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0024297_5	33035.JPJF01000106_gene3135	507.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-0024297_5	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0024297_6	K06909	415.7	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0024297_6	phrog_3717	168.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0024297_6	UniRef90_A0A1C6CDG5	1055.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-0024297_6	33035.JPJF01000106_gene3136	726.0	0	Terminase small subunit	N/A
Pfam	UHGV-0024297_6	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
Pfam	UHGV-0024297_6	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0024297_6	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0024297_6	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0024297_6	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0024297_6	PF04466,PF17288,PF03592,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0024297_7	665956.HMPREF1032_00638	69.7	0.0000000000000103	N/A	N/A
PHROG	UHGV-0024297_8	phrog_33130	120.5	3.4e-36	N/A	unknown function
UniRef90	UHGV-0024297_8	UniRef90_A0A3B9CD52	68.2	0.000000000000384	S1-like domain-containing protein	N/A
structural_annotation	UHGV-0024297_8	PF10922,MF_00839	N/A	N/A	N/A	N/A
PHROG	UHGV-0024297_9	phrog_23707	91.7	8.3e-27	N/A	unknown function
UniRef90	UHGV-0024297_9	UniRef90_A0A3A6L1C4	148.0	4.2039e-45	Alanine racemase	N/A
eggNOG-mapper	UHGV-0024297_9	411483.FAEPRAA2165_01889	83.2	1.16e-18	N/A	N/A
PHROG	UHGV-0024297_11	phrog_4572	105.8	2.3e-31	N/A	unknown function
eggNOG-mapper	UHGV-0024297_11	411902.CLOBOL_05688	88.2	4.12e-21	N/A	N/A
structural_annotation	UHGV-0024297_15	PF18313	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0024297_18	PF02888	N/A	N/A	N/A	N/A
PHROG	UHGV-0024297_19	phrog_7839	74.9	8.8e-22	N/A	unknown function
eggNOG-mapper	UHGV-0024297_19	1410650.JHWL01000003_gene2844	94.4	9.09e-23	N/A	N/A
PHROG	UHGV-0024297_22	phrog_757	124.3	6.9e-37	DNA methyltransferase	other
UniRef90	UHGV-0024297_22	UniRef90_A0A349YFI2	174.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0024297_22	1095750.HMPREF9970_0173	186.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0024297_22	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
PHROG	UHGV-0024297_23	phrog_757	47.5	0.00000000000023	DNA methyltransferase	other
UniRef90	UHGV-0024297_23	UniRef90_A0A7J2R6L5	70.9	0.00000000000000372	DNA cytosine methyltransferase (Fragment)	N/A
eggNOG-mapper	UHGV-0024297_23	748224.HMPREF9436_03069	94.0	3.84e-23	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0024297_23	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
PHROG	UHGV-0024297_26	phrog_16304	130.1	1.8e-38	N/A	unknown function
UniRef90	UHGV-0024297_26	UniRef90_A0A1C6CBN6	371.0	0	N/A	N/A
eggNOG-mapper	UHGV-0024297_26	33035.JPJF01000122_gene2459	130.0	4.4e-34	N/A	N/A
Pfam	UHGV-0024297_26	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-0024297_26	PF19808	N/A	N/A	N/A	N/A
PHROG	UHGV-0024297_27	phrog_244	67.7	2.3e-19	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0024297_27	742740.HMPREF9474_03491	180.0	0	N/A	N/A
structural_annotation	UHGV-0024297_27	PF01870,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
PHROG	UHGV-0024297_28	phrog_2113	57.0	2.3e-16	N/A	unknown function
structural_annotation	UHGV-0024297_28	PF21715,TIGR04176,COG1654	N/A	N/A	N/A	N/A
PHROG	UHGV-0024297_29	phrog_7566	91.3	5.8e-27	N/A	unknown function
UniRef90	UHGV-0024297_29	UniRef90_UPI001CD6F8EA	137.0	4.18e-40	phosphoenolpyruvate carboxykinase	N/A
eggNOG-mapper	UHGV-0024297_29	1304866.K413DRAFT_1198	48.9	0.00000386	N/A	N/A
PHROG	UHGV-0024297_30	phrog_72	44.2	0.0000000000021	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0024297_30	1304866.K413DRAFT_1197	109.0	1.3e-27	N/A	N/A
structural_annotation	UHGV-0024297_30	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0024297_31	phrog_155	126.0	2.5e-37	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0024297_31	UniRef90_A0A1C6CBK6	274.0	0	ERF superfamily	N/A
eggNOG-mapper	UHGV-0024297_31	1304866.K413DRAFT_1196	228.0	0	ERF superfamily	N/A
Pfam	UHGV-0024297_31	PF04404	N/A	N/A	ERF superfamily	ERF
COG	UHGV-0024297_31	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0024297_31	PF04404,TIGR00607,COG4712	N/A	N/A	N/A	N/A
UniRef90	UHGV-0024297_34	UniRef90_UPI001BC23C38	77.4	2.21e-16	Nitrogenase molybdenum-iron protein subunit beta	N/A
AcrCatalog	UHGV-0024297_36	cluster_17974	58.5	0.00000000000000337	NA	N/A
Pfam	UHGV-0024297_39	PF13455	N/A	N/A	Meiotically up-regulated gene 113	MUG113
structural_annotation	UHGV-0024297_39	PF10544	N/A	N/A	N/A	N/A
UniRef90	UHGV-0024297_42	UniRef90_A0A2N5PI32	103.0	1.57e-27	N/A	N/A
eggNOG-mapper	UHGV-0024297_42	411470.RUMGNA_03231	103.0	2.64e-28	N/A	N/A
Pfam	UHGV-0024297_42	PF05339	N/A	N/A	N/A	DUF739
COG	UHGV-0024297_42	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-0024297_42	PF05339,MF_00535,NF002773,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0024297_43	phrog_2967	47.4	0.00000000000036	transcriptional regulator	transcription regulation
UniRef90	UHGV-0024297_43	UniRef90_UPI001D029144	163.0	0	transcriptional regulator	N/A
eggNOG-mapper	UHGV-0024297_43	457412.RSAG_00795	123.0	4e-34	sequence-specific DNA binding	N/A
COG	UHGV-0024297_43	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0024297_43	PF01381,NF007257,COG3655	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0024297_45	1408311.JNJM01000013_gene2316	196.0	0	N/A	N/A
UniRef90	UHGV-0024297_46	UniRef90_UPI00098874B1	110.0	4.06e-29	N/A	N/A
eggNOG-mapper	UHGV-0024297_46	257314.LJ_1744	102.0	5.71e-27	N/A	N/A
Pfam	UHGV-0024297_46	PF05987	N/A	N/A	N/A	DUF898
COG	UHGV-0024297_46	COG4269	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0024297_46	PF20403	N/A	N/A	N/A	N/A
KOfam	UHGV-0024297_47	K14059	146.3	3.79752e-43	int; integrase	N/A
PHROG	UHGV-0024297_47	phrog_1	144.5	9.79508e-43	integrase	integration and excision
UniRef90	UHGV-0024297_47	UniRef90_A0A1C6C970	713.0	0	Site-specific recombinase XerD	N/A
eggNOG-mapper	UHGV-0024297_47	1304866.K413DRAFT_1180	386.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0024297_47	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0024297_47	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0024297_47	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0024297_48	K17733	150.9	8.40779e-45	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	N/A
PHROG	UHGV-0024297_48	phrog_2649	131.6	7.6e-39	endolysin	lysis
UniRef90	UHGV-0024297_48	UniRef90_A0A1C5W0J0	508.0	0	Peptidoglycan L-alanyl-D-glutamate endopeptidase CwlK	N/A
eggNOG-mapper	UHGV-0024297_48	411902.CLOBOL_06235	325.0	0	D-alanyl-D-alanine carboxypeptidase	N/A
AcrCatalog	UHGV-0024297_48	cluster_9940	79.0	3.18e-20	NA	N/A
Pfam	UHGV-0024297_48	PF13539	N/A	N/A	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
COG	UHGV-0024297_48	COG1876	N/A	N/A	LD-carboxypeptidase LdcB, LAS superfamily	N/A
structural_annotation	UHGV-0024297_48	PF02557,PF19127,MF_01924,NF007557,TIGR04035,COG2173	N/A	N/A	N/A	N/A
UniRef90	UHGV-0024297_49	UniRef90_UPI0011582918	214.0	0	fibronectin type III domain-containing protein	N/A
eggNOG-mapper	UHGV-0024297_49	632245.CLP_1288	62.0	0.000000153	cellulose 1,4-beta-cellobiosidase activity	N/A
Pfam	UHGV-0024297_49	PF00041	N/A	N/A	Fibronectin type III domain	fn3
COG	UHGV-0024297_49	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
structural_annotation	UHGV-0024297_49	PF00041,NF033814,COG3979	N/A	N/A	N/A	N/A
UniRef90	UHGV-0024297_51	UniRef90_UPI0011584BB4	195.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-0024297_52	1304866.K413DRAFT_0769	114.0	2.6e-30	N/A	N/A
PHROG	UHGV-0024297_53	phrog_18725	71.0	2.1e-20	N/A	unknown function
eggNOG-mapper	UHGV-0024297_53	411902.CLOBOL_00123	134.0	9.84e-39	N/A	N/A
PHROG	UHGV-0024297_54	phrog_13879	151.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0024297_54	411902.CLOBOL_00124	681.0	0	N/A	N/A
structural_annotation	UHGV-0024297_54	PF14594,PF21114,MF_00813,NF033848,TIGR02961,COG4379,COG4266	N/A	N/A	N/A	N/A
PHROG	UHGV-0024297_55	phrog_1194	63.0	4.4e-18	N/A	unknown function
eggNOG-mapper	UHGV-0024297_55	411902.CLOBOL_00125	132.0	5.07e-38	N/A	N/A
structural_annotation	UHGV-0024297_55	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0024297_56	phrog_1535	193.8	0	tail length tape measure protein	tail
UniRef90	UHGV-0024297_56	UniRef90_A0A1C6CG40	1194.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0024297_56	411459.RUMOBE_01384	225.0	0	phage tail tape measure protein	N/A
COG	UHGV-0024297_56	COG5412	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-0024297_57	phrog_706	122.0	4.7e-36	N/A	unknown function
UniRef90	UHGV-0024297_57	UniRef90_A0A1C6CG51	352.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0024297_57	411459.RUMOBE_01383	193.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0024297_57	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0024297_57	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0024297_58	phrog_11299	70.0	3.7e-20	N/A	unknown function
eggNOG-mapper	UHGV-0024297_58	476272.RUMHYD_01783	82.8	3.34e-18	N/A	N/A
structural_annotation	UHGV-0024297_58	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0024297_59	phrog_3099	122.0	4e-36	N/A	unknown function
eggNOG-mapper	UHGV-0024297_59	33035.JPJF01000106_gene3126	198.0	0	N/A	N/A
structural_annotation	UHGV-0024297_59	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0024297_60	phrog_3266	89.8	2.5e-26	tail completion	connector
eggNOG-mapper	UHGV-0024297_60	476272.RUMHYD_01781	145.0	2.9105e-42	N/A	N/A
structural_annotation	UHGV-0024297_60	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0024297_61	phrog_556	56.6	4.6e-17	minor head protein	head and packaging
UniRef90	UHGV-0024297_61	UniRef90_UPI0008B4CFF0	229.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0024297_61	476272.RUMHYD_01780	175.0	0	N/A	N/A
structural_annotation	UHGV-0024297_61	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0024297_62	phrog_3366	99.7	2e-29	N/A	unknown function
eggNOG-mapper	UHGV-0024297_62	476272.RUMHYD_01779	149.0	6.30584e-44	N/A	N/A
structural_annotation	UHGV-0024297_62	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0024297_64	phrog_8680	229.5	0	N/A	unknown function
UniRef90	UHGV-0024297_64	UniRef90_A0A412EKN2	402.0	0	N/A	N/A
eggNOG-mapper	UHGV-0024297_64	411470.RUMGNA_02208	282.0	0	N/A	N/A
Pfam	UHGV-0024297_64	PF14386	N/A	N/A	N/A	DUF4417
structural_annotation	UHGV-0024297_64	PF14386	N/A	N/A	N/A	N/A
PHROG	UHGV-0024297_65	phrog_18218	138.9	1.40004e-41	N/A	unknown function
UniRef90	UHGV-0024297_65	UniRef90_A0A8D9PGR5	154.0	0	Holin	N/A
eggNOG-mapper	UHGV-0024297_65	411902.CLOBOL_03424	80.9	2.44e-18	N/A	N/A
structural_annotation	UHGV-0024297_65	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0024297_66	phrog_355	58.4	1.3e-16	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0024297_66	UniRef90_UPI0018A09237	156.0	0	N/A	N/A
eggNOG-mapper	UHGV-0024297_66	397290.C810_05229	145.0	4.76441e-44	N/A	N/A
Pfam	UHGV-0024297_66	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-0024297_66	PF14359,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-0024297_68	phrog_541	101.2	4.7e-30	head-tail adaptor	connector
eggNOG-mapper	UHGV-0024297_68	642492.Clole_0822	68.2	0.00000000000169	N/A	N/A
PHROG	UHGV-0024297_69	phrog_247	220.3	0	major head protein	head and packaging
UniRef90	UHGV-0024297_69	UniRef90_UPI001BA5448B	289.0	0	major capsid protein	N/A
eggNOG-mapper	UHGV-0024297_69	33035.JPJF01000106_gene3132	556.0	0	N/A	N/A
structural_annotation	UHGV-0024297_69	PF20036,MF_04113,TIGR04387,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-0024297_70	UniRef90_UPI001C0EBA51	274.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0024297_70	742765.HMPREF9457_02126	75.5	0.0000000000000435	COG NOG36366 non supervised orthologous group	N/A
structural_annotation	UHGV-0024297_72	PF00210,MF_01441,NF011597,COG1528	N/A	N/A	N/A	N/A
PHROG	UHGV-0024297_73	phrog_20016	75.4	5.7e-22	N/A	unknown function
UniRef90	UHGV-0024297_73	UniRef90_A0A316MV88	233.0	0	BclA_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0024297_73	1226322.HMPREF1545_00077	70.9	0.000000000000128	N/A	N/A
structural_annotation	UHGV-0024297_73	PF18573,NF033147	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0024297_74	476272.RUMHYD_01770	61.6	0.000000000161	N/A	N/A
UniRef90	UHGV-0024297_75	UniRef90_R7BK61	174.0	0	NUMOD1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0024297_75	1499689.CCNN01000004_gene307	64.7	0.00000000151	Intron-encoded nuclease repeat 2	N/A
structural_annotation	UHGV-0024297_75	PF15653,PF20987,TIGR01453	N/A	N/A	N/A	N/A
PHROG	UHGV-0024297_78	phrog_21718	70.4	3.1e-20	N/A	unknown function
eggNOG-mapper	UHGV-0024297_78	1235790.C805_00058	99.4	3.24e-24	N/A	N/A
UniRef90	UHGV-0024297_79	UniRef90_A0A417UWY7	118.0	9.91e-33	CTP synthase	N/A
eggNOG-mapper	UHGV-0024297_79	476272.RUMHYD_01766	52.8	0.000000106	N/A	N/A
eggNOG-mapper	UHGV-0024297_80	33035.JPJF01000106_gene3134	72.8	0.0000000000000846	Phage minor capsid protein 2	N/A
COG	UHGV-0024297_80	COG2369	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0024297	Yes	46,680	46	100	1