vOTU vOTU-082786

vOTU: vOTU-082786

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-082786
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00040 → vSUBFAM-03454 → vGENUS-05048 → vSUBGEN-12926 → vOTU-082786
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales
Host range breadth	Order
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0148776
Biosample ID	SAMN05414994
Genome length (bp)	38,988 bps
CheckV completeness	99.57% (High-quality)
CDS count	57
CDS density	90.24%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales	Total connections	6	Host agreement	100
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.57)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0148776_1	phrog_4433	74.9	1.2e-21	N/A	unknown function
eggNOG-mapper	UHGV-0148776_1	886882.PPSC2_p0048	108.0	1.21e-25	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0148776_1	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
Pfam	UHGV-0148776_2	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
structural_annotation	UHGV-0148776_2	PF14354,TIGR03655	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0148776_4	693746.OBV_43260	73.9	1.06e-16	N/A	N/A
structural_annotation	UHGV-0148776_4	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
UniRef90	UHGV-0148776_5	UniRef90_UPI0018A07F89	56.2	0.000000016	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0148776_5	411473.RUMCAL_01355	49.3	0.00000544	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0148776_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
UniRef90	UHGV-0148776_6	UniRef90_A0A3R6WTB1	97.1	1.9e-19	YHYH domain-containing protein	N/A
eggNOG-mapper	UHGV-0148776_6	756499.Desde_3141	58.9	0.000000444	Bacterial Ig-like domain 2	N/A
NCBIFam	UHGV-0148776_6	NF033223.2	N/A	N/A	YHYH domain-containing protein	N/A
COG	UHGV-0148776_6	COG5492	N/A	N/A	N/A	N/A
PHROG	UHGV-0148776_7	phrog_8	41.7	0.000000000024	transcriptional regulator	transcription regulation
UniRef90	UHGV-0148776_7	UniRef90_A0A845R7R6	103.0	2.81e-25	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0148776_7	1226322.HMPREF1545_00148	50.1	0.00000764	Transcriptional	N/A
COG	UHGV-0148776_7	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
UniRef90	UHGV-0148776_8	UniRef90_A0A8D9UHA6	84.3	1.21e-17	Helix-turn-helix XRE-family like protein	N/A
Pfam	UHGV-0148776_8	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0148776_8	COG4636	N/A	N/A	Endonuclease, Uma2 family (restriction endonuclease fold)	N/A
structural_annotation	UHGV-0148776_8	PF01381,MF_02017,TIGR03070,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0148776_9	K14059	132.3	6.9e-39	int; integrase	N/A
PHROG	UHGV-0148776_9	phrog_1	150.9	1.12104e-44	integrase	integration and excision
UniRef90	UHGV-0148776_9	UniRef90_UPI000F051A1D	426.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0148776_9	693746.OBV_43340	395.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0148776_9	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0148776_9	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0148776_9	PF00589,PF13495,MF_02055,TIGR02225,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0148776_10	UniRef90_A0A843GWV6	109.0	3.78e-29	Rubrerythrin domain-containing protein	N/A
UniRef90	UHGV-0148776_13	UniRef90_A0A1C6JAI6	90.1	6.05e-22	RNA polymerase sigma factor, sigma-70 family	N/A
structural_annotation	UHGV-0148776_13	PF16509,MF_00245,NF001066,COG2739	N/A	N/A	N/A	N/A
UniRef90	UHGV-0148776_14	UniRef90_U2AS96	842.0	0	MuF_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0148776_14	693746.OBV_01590	645.0	0	N/A	N/A
eggNOG-mapper	UHGV-0148776_15	693746.OBV_01600	100.0	7.35e-20	N/A	N/A
KOfam	UHGV-0148776_16	K17733	130.2	1.8e-38	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	N/A
PHROG	UHGV-0148776_16	phrog_6523	120.0	2.7e-35	endolysin	lysis
UniRef90	UHGV-0148776_16	UniRef90_A0A8J6J9A0	214.0	0	M15 family metallopeptidase	N/A
eggNOG-mapper	UHGV-0148776_16	742738.HMPREF9460_00364	181.0	0	D-alanyl-D-alanine carboxypeptidase	N/A
Pfam	UHGV-0148776_16	PF13539	N/A	N/A	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
COG	UHGV-0148776_16	COG1876	N/A	N/A	LD-carboxypeptidase LdcB, LAS superfamily	N/A
structural_annotation	UHGV-0148776_16	PF02557,NF000472,COG2173	N/A	N/A	N/A	N/A
PHROG	UHGV-0148776_17	phrog_872	157.2	0	N/A	unknown function
UniRef90	UHGV-0148776_17	UniRef90_A0A8J6M9F5	225.0	0	N/A	N/A
eggNOG-mapper	UHGV-0148776_17	1226322.HMPREF1545_00781	177.0	0	N/A	N/A
Pfam	UHGV-0148776_17	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-0148776_17	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-0148776_17	PF11195	N/A	N/A	N/A	N/A
PHROG	UHGV-0148776_18	phrog_297	45.1	0.0000000000016	holin	lysis
UniRef90	UHGV-0148776_18	UniRef90_A0A417BWY3	127.0	3.81e-36	Phage holin	N/A
eggNOG-mapper	UHGV-0148776_18	1408437.JNJN01000039_gene392	93.2	6.8e-24	COG COG5546 Small integral membrane protein	N/A
Pfam	UHGV-0148776_18	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
NCBIFam	UHGV-0148776_18	TIGR01598.1	N/A	N/A	phage holin	N/A
COG	UHGV-0148776_18	COG5546	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0148776_18	COG5546	N/A	N/A	N/A	N/A
PHROG	UHGV-0148776_19	phrog_23092	75.2	8.3e-22	N/A	unknown function
eggNOG-mapper	UHGV-0148776_19	1226322.HMPREF1545_00780	80.1	7.45e-18	N/A	N/A
PHROG	UHGV-0148776_20	phrog_4105	63.3	4.1e-18	N/A	unknown function
KOfam	UHGV-0148776_22	K19719	240.3	0	COL2A; collagen type II alpha	N/A
PHROG	UHGV-0148776_22	phrog_819	160.7	0	tail protein	tail
Pfam	UHGV-0148776_22	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
PHROG	UHGV-0148776_23	phrog_156	114.1	8.9e-35	portal protein	head and packaging
eggNOG-mapper	UHGV-0148776_23	693746.OBV_01670	706.0	0	N/A	N/A
structural_annotation	UHGV-0148776_23	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0148776_24	phrog_3287	50.0	0.0000000000000016	virion structural protein	head and packaging
UniRef90	UHGV-0148776_24	UniRef90_A0A4D7ASB8	574.0	0	N/A	N/A
eggNOG-mapper	UHGV-0148776_24	693746.OBV_01680	608.0	0	N/A	N/A
structural_annotation	UHGV-0148776_24	PF11134,MF_03027,NF010237,TIGR03511,COG2319	N/A	N/A	N/A	N/A
KOfam	UHGV-0148776_25	K06909	135.3	5.70001e-40	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0148776_25	phrog_979	155.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-0148776_25	UniRef90_A0A4D7AXL6	626.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0148776_25	693746.OBV_01690	617.0	0	phage Terminase large subunit	N/A
Pfam	UHGV-0148776_25	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0148776_25	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0148776_25	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0148776_26	phrog_422	128.4	6.2e-38	major head protein	head and packaging
UniRef90	UHGV-0148776_26	UniRef90_A0A6A8VJ17	253.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0148776_26	764291.STRUR_2102	200.0	0	N/A	N/A
structural_annotation	UHGV-0148776_26	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0148776_27	755731.Clo1100_2435	59.3	0.000000253	N/A	N/A
eggNOG-mapper	UHGV-0148776_28	1519439.JPJG01000011_gene57	80.1	2.71e-17	N/A	N/A
structural_annotation	UHGV-0148776_28	PF11650	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0148776_30	PF16677	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0148776_31	1519439.JPJG01000053_gene1371	47.8	0.00000145	N/A	N/A
eggNOG-mapper	UHGV-0148776_32	547042.BACCOPRO_02157	61.2	0.0000000000368	MutS domain I	N/A
COG	UHGV-0148776_32	COG0249	N/A	N/A	DNA mismatch repair ATPase MutS	N/A
PHROG	UHGV-0148776_35	phrog_757	198.8	0	DNA methyltransferase	other
UniRef90	UHGV-0148776_35	UniRef90_A0A355KVL2	352.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0148776_35	748224.HMPREF9436_03069	352.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0148776_35	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0148776_35	PF00145,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0148776_39	phrog_22543	46.5	0.00000000000036	N/A	unknown function
UniRef90	UHGV-0148776_39	UniRef90_A0A8D9PDK2	62.4	0.00000000012	Zinc-ribbon containing domain	N/A
eggNOG-mapper	UHGV-0148776_41	1232449.BAHV02000016_gene1829	133.0	2.49e-38	N/A	N/A
PHROG	UHGV-0148776_42	phrog_38832	47.8	0.00000000000025	N/A	unknown function
eggNOG-mapper	UHGV-0148776_42	665956.HMPREF1032_00143	50.8	0.00000363	N/A	N/A
KOfam	UHGV-0148776_44	K00390	90.9	1.7e-26	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0148776_44	phrog_424	111.7	6.1e-33	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0148776_44	UniRef90_UPI001D087498	430.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-0148776_44	1408437.JNJN01000032_gene2312	313.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-0148776_44	BrxP_00001	68.6	3.1e-20	BrxP	BREX
Pfam	UHGV-0148776_44	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0148776_44	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0148776_44	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
KOfam	UHGV-0148776_47	K00571	106.3	3.7e-31	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0148776_47	phrog_67	97.8	2.1e-29	DNA methyltransferase	other
UniRef90	UHGV-0148776_47	UniRef90_A0A1C6E5W1	468.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0148776_47	910314.HMPREF9220_0636	389.0	0	Belongs to the N(4) N(6)-methyltransferase family	N/A
PADLOC	UHGV-0148776_47	MTase_II_00157	88.2	4.4e-26	Type II methyltransferase	RM
Pfam	UHGV-0148776_47	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0148776_47	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0148776_47	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
KOfam	UHGV-0148776_48	K01160	62.6	1.2e-17	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0148776_48	phrog_34	56.7	5.3e-16	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0148776_48	UniRef90_UPI001897698E	127.0	2.13e-35	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0148776_48	796940.HMPREF9628_00163	121.0	1.02e-33	Endodeoxyribonuclease RusA	N/A
COG	UHGV-0148776_48	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0148776_48	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0148776_49	phrog_15768	62.4	6.8e-18	N/A	unknown function
eggNOG-mapper	UHGV-0148776_49	1410650.JHWL01000003_gene2848	63.2	0.00000000519	N/A	N/A
Pfam	UHGV-0148776_49	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-0148776_49	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-0148776_50	K03111	137.9	1.2e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0148776_50	phrog_44	135.1	4.9e-40	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0148776_50	UniRef90_A0A350TKS2	160.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0148776_50	1226322.HMPREF1545_04080	155.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0148776_50	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0148776_50	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0148776_50	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0148776_50	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0148776_50	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0148776_51	K07451	41.4	0.000000000025	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0148776_51	phrog_7370	66.4	4.1e-19	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0148776_51	UniRef90_UPI001C122365	139.0	1.79e-40	HNH endonuclease	N/A
Pfam	UHGV-0148776_51	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0148776_51	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
UniRef90	UHGV-0148776_52	UniRef90_A0A8D9PDS2	125.0	8.38e-34	NinB protein	N/A
eggNOG-mapper	UHGV-0148776_52	445972.ANACOL_01825	94.4	1.46e-22	N/A	N/A
PHROG	UHGV-0148776_53	phrog_14970	187.8	0	N/A	unknown function
UniRef90	UHGV-0148776_53	UniRef90_UPI00164BFA28	187.0	0	Rad52/Rad22 family DNA repair protein	N/A
eggNOG-mapper	UHGV-0148776_53	411470.RUMGNA_02193	147.0	8.9543e-43	double-strand break repair protein	N/A
Pfam	UHGV-0148776_53	PF04098	N/A	N/A	Rad52/22 family double-strand break repair protein	Rad52_Rad22
COG	UHGV-0148776_53	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-0148776_53	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
KOfam	UHGV-0148776_57	K24213	43.7	0.0000000000023	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	N/A
PHROG	UHGV-0148776_57	phrog_27197	47.1	0.00000000000052	N/A	unknown function
eggNOG-mapper	UHGV-0148776_57	886882.PPSC2_p0363	72.4	0.00000000000277	regulation of DNA-templated transcription, elongation	N/A
Pfam	UHGV-0148776_57	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0148776_57	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0148776_57	NF007410	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0148776	Yes	38,988	51	100	1
UHGV-0296300	No	38,878	51	99	1
UHGV-0202113	No	24,177	52	62	1