vOTU vOTU-082885

vOTU: vOTU-082885

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-082885
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-01365 → vGENUS-04011 → vSUBGEN-31373 → vOTU-082885
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae
Host range breadth	Family
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1500872
Biosample ID	SAMEA2338661
Genome length (bp)	35,706 bps
CheckV completeness	92.28% (High-quality)
CDS count	50
CDS density	87.18%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae	Total connections	18	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Agathobacter	Total connections	13	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 92.28)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1500872_1	K01447	110.9	1.5e-32	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1500872_1	phrog_670	131.3	8.5e-39	endolysin	lysis
UniRef90	UHGV-1500872_1	UniRef90_UPI00192054C9	285.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-1500872_1	1235802.C823_05611	205.0	0	Ami_2	N/A
Pfam	UHGV-1500872_1	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-1500872_1	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-1500872_1	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-1500872_2	phrog_443	59.3	1e-16	holin	lysis
UniRef90	UHGV-1500872_2	UniRef90_UPI001C0212A6	109.0	8e-30	holin	N/A
eggNOG-mapper	UHGV-1500872_2	626523.GCWU000342_01012	85.9	4.24e-21	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-1500872_2	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-1500872_2	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-1500872_3	phrog_4105	55.5	9.6e-16	N/A	unknown function
eggNOG-mapper	UHGV-1500872_3	521003.COLINT_02361	53.5	0.0000000827	N/A	N/A
PHROG	UHGV-1500872_4	phrog_19291	173.8	0	N/A	unknown function
eggNOG-mapper	UHGV-1500872_4	938288.HG326225_gene1129	157.0	3.52001e-40	N/A	N/A
structural_annotation	UHGV-1500872_4	PF02191,COG3823	N/A	N/A	N/A	N/A
UniRef90	UHGV-1500872_5	UniRef90_UPI0018994E65	125.0	3.19e-28	discoidin domain-containing protein	N/A
eggNOG-mapper	UHGV-1500872_5	243164.DET1075	245.0	0	N/A	N/A
PHROG	UHGV-1500872_6	phrog_6616	123.9	1.1e-36	tail protein	tail
eggNOG-mapper	UHGV-1500872_6	946235.CAER01000065_gene2433	201.0	0	N/A	N/A
PHROG	UHGV-1500872_7	phrog_1194	80.7	1.5e-23	N/A	unknown function
eggNOG-mapper	UHGV-1500872_7	33035.JPJF01000093_gene2242	145.0	8.82818e-44	N/A	N/A
structural_annotation	UHGV-1500872_7	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1500872_8	phrog_1535	498.6	0	tail length tape measure protein	tail
UniRef90	UHGV-1500872_8	UniRef90_A0A1C5RGR7	613.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1500872_8	33035.JPJF01000093_gene2243	731.0	0	phage tail tape measure protein	N/A
COG	UHGV-1500872_8	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-1500872_8	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-1500872_9	phrog_8355	112.6	9.1e-34	N/A	unknown function
UniRef90	UHGV-1500872_9	UniRef90_UPI001F1300CC	203.0	0	bacteriophage Gp15 family protein	N/A
eggNOG-mapper	UHGV-1500872_9	1280692.AUJL01000027_gene2152	112.0	1.7e-30	N/A	N/A
Pfam	UHGV-1500872_9	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1500872_9	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1500872_10	phrog_8300	90.2	1.6e-26	N/A	unknown function
eggNOG-mapper	UHGV-1500872_10	1282664.H354_06701	108.0	1.13e-29	N/A	N/A
structural_annotation	UHGV-1500872_10	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1500872_11	phrog_820	103.0	1.8e-30	major tail protein	tail
eggNOG-mapper	UHGV-1500872_11	33035.JPJF01000093_gene2246	216.0	0	N/A	N/A
structural_annotation	UHGV-1500872_11	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1500872_12	phrog_2595	76.0	4.2e-22	head-tail connector protein	connector
UniRef90	UHGV-1500872_12	UniRef90_UPI00164BAA81	242.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-1500872_12	1282664.H354_06686	109.0	7.95e-29	N/A	N/A
Pfam	UHGV-1500872_12	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-1500872_12	PF12691,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-1500872_13	phrog_556	50.9	0.000000000000026	minor head protein	head and packaging
eggNOG-mapper	UHGV-1500872_13	742740.HMPREF9474_03509	163.0	0	N/A	N/A
PHROG	UHGV-1500872_14	phrog_8710	147.8	2.10195e-44	N/A	unknown function
eggNOG-mapper	UHGV-1500872_14	742740.HMPREF9474_03508	157.0	0	N/A	N/A
structural_annotation	UHGV-1500872_14	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1500872_15	phrog_541	81.2	1.1e-23	head-tail adaptor	connector
eggNOG-mapper	UHGV-1500872_15	33035.JPJF01000093_gene2250	164.0	0	N/A	N/A
PHROG	UHGV-1500872_16	phrog_1378	70.8	1.3e-20	N/A	unknown function
eggNOG-mapper	UHGV-1500872_16	1280692.AUJL01000027_gene2159	65.1	0.00000000000167	N/A	N/A
PHROG	UHGV-1500872_17	phrog_422	343.1	0	major head protein	head and packaging
UniRef90	UHGV-1500872_17	UniRef90_A0A3R6PT58	513.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-1500872_17	33035.JPJF01000093_gene2252	511.0	0	N/A	N/A
structural_annotation	UHGV-1500872_17	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1500872_18	phrog_2303	150.3	1.12104e-44	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-1500872_18	1304866.K413DRAFT_0806	176.0	0	N/A	N/A
PHROG	UHGV-1500872_19	phrog_581	247.2	0	minor head protein	head and packaging
UniRef90	UHGV-1500872_19	UniRef90_UPI00164A2DDC	627.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-1500872_19	33035.JPJF01000093_gene2255	500.0	0	N/A	N/A
Pfam	UHGV-1500872_19	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
Pfam	UHGV-1500872_19	PF18451	N/A	N/A	Contact-dependent growth inhibition CdiA C-terminal domain	CdiA_C
COG	UHGV-1500872_19	COG5585	N/A	N/A	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	N/A
structural_annotation	UHGV-1500872_19	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-1500872_20	phrog_533	290.7	0	portal protein	head and packaging
UniRef90	UHGV-1500872_20	UniRef90_UPI001F14233C	935.0	0	capsid protein	N/A
eggNOG-mapper	UHGV-1500872_20	1282664.H354_06626	536.0	0	N/A	N/A
structural_annotation	UHGV-1500872_20	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-1500872_21	K06909	94.6	1.3e-27	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1500872_21	phrog_10250	47.4	0.000000000000025	N/A	unknown function
UniRef90	UHGV-1500872_21	UniRef90_UPI00164A3891	936.0	0	terminase	N/A
eggNOG-mapper	UHGV-1500872_21	394503.Ccel_3050	660.0	0	Phage terminase, large subunit, PBSX family	N/A
COG	UHGV-1500872_21	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1500872_21	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1500872_22	phrog_309	199.9	0	terminase small subunit	head and packaging
UniRef90	UHGV-1500872_22	UniRef90_UPI00164CAAF8	274.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1500872_22	1232453.BAIF02000011_gene3351	190.0	0	HNH endonuclease	N/A
Pfam	UHGV-1500872_22	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1500872_22	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
structural_annotation	UHGV-1500872_22	PF07141	N/A	N/A	N/A	N/A
PHROG	UHGV-1500872_23	phrog_36	71.2	1.6e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-1500872_23	UniRef90_A0A173S7S0	283.0	0	RNA polymerase sigma-70 factor, sigma-B/F/G subfamily	N/A
eggNOG-mapper	UHGV-1500872_23	1235800.C819_02243	124.0	3.19e-34	N/A	N/A
structural_annotation	UHGV-1500872_23	PF07374,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
KOfam	UHGV-1500872_24	K18843	49.1	0.00000000000012	hicB; antitoxin HicB	N/A
PHROG	UHGV-1500872_24	phrog_497	66.5	5.1e-19	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1500872_24	UniRef90_A0A391P6Z9	199.0	0	Antitoxin HicB	N/A
eggNOG-mapper	UHGV-1500872_24	1122925.KB895394_gene1703	150.0	2.8026e-45	HicB_like antitoxin of bacterial toxin-antitoxin system	N/A
Pfam	UHGV-1500872_24	PF15919	N/A	N/A	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
COG	UHGV-1500872_24	COG1598	N/A	N/A	Antitoxin component HicB of the HicAB toxin-antitoxin system	N/A
structural_annotation	UHGV-1500872_24	PF15919,COG1598	N/A	N/A	N/A	N/A
UniRef90	UHGV-1500872_25	UniRef90_A0A374DR94	308.0	0	HEPN_RiboL-PSP domain-containing protein	N/A
eggNOG-mapper	UHGV-1500872_25	985665.HPL003_22485	107.0	3.4e-26	N/A	N/A
Pfam	UHGV-1500872_25	PF18735	N/A	N/A	RiboL-PSP-HEPN	HEPN_RiboL-PSP
KOfam	UHGV-1500872_28	K07741	98.3	9.2e-29	antB; anti-repressor protein	N/A
PHROG	UHGV-1500872_28	phrog_5817	104.8	1.1e-30	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1500872_28	UniRef90_A0A415TWU5	483.0	0	AntA domain-containing protein	N/A
eggNOG-mapper	UHGV-1500872_28	1235802.C823_01054	137.0	2.22e-36	AntA/AntB antirepressor	N/A
Pfam	UHGV-1500872_28	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
COG	UHGV-1500872_28	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-1500872_28	PF09669,TIGR02681,COG3646	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1500872_29	PF07878,NF010256,COG4691	N/A	N/A	N/A	N/A
KOfam	UHGV-1500872_30	K18830	58.0	1.3e-16	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1500872_30	phrog_8	69.5	6.9e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-1500872_30	UniRef90_A0A3R6AG27	108.0	4.56e-27	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1500872_30	509191.AEDB02000078_gene1436	65.5	0.0000000000222	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
PADLOC	UHGV-1500872_30	retron_type_VI_hth_cluster2_1	48.0	0.00000000000014	N/A	Retron
Pfam	UHGV-1500872_30	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1500872_30	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1500872_30	PF01381,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-1500872_33	phrog_2011	215.3	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1500872_33	UniRef90_J9GA63	300.0	0	Prophage antirepressor-related protein	N/A
eggNOG-mapper	UHGV-1500872_33	573061.Clocel_3584	153.0	7.97339e-43	Prophage antirepressor	N/A
Pfam	UHGV-1500872_33	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
COG	UHGV-1500872_33	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-1500872_33	PF02498,NF033622,COG3617	N/A	N/A	N/A	N/A
PHROG	UHGV-1500872_36	phrog_2514	87.7	1.1e-25	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1500872_36	742733.HMPREF9469_01845	172.0	0	N/A	N/A
structural_annotation	UHGV-1500872_36	PF10771,MF_01177,TIGR01714,COG5529	N/A	N/A	N/A	N/A
PHROG	UHGV-1500872_37	phrog_1682	57.2	3e-16	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1500872_37	UniRef90_A0A412FH46	129.0	9.43e-37	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1500872_37	1235790.C805_00029	120.0	3.32e-34	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
Pfam	UHGV-1500872_37	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1500872_37	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1500872_37	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-1500872_39	phrog_7566	96.5	1.5e-28	N/A	unknown function
UniRef90	UHGV-1500872_39	UniRef90_A0A412KF94	179.0	0	Phosphoenolpyruvate carboxykinase	N/A
eggNOG-mapper	UHGV-1500872_39	411902.CLOBOL_05695	54.7	0.0000000198	N/A	N/A
PHROG	UHGV-1500872_40	phrog_72	58.0	1.4e-16	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1500872_40	1304866.K413DRAFT_1197	117.0	6.64e-31	N/A	N/A
PHROG	UHGV-1500872_41	phrog_155	125.7	3.4e-37	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1500872_41	UniRef90_UPI001C031D02	335.0	0	ERF family protein	N/A
eggNOG-mapper	UHGV-1500872_41	357809.Cphy_2988	217.0	0	ERF superfamily	N/A
Pfam	UHGV-1500872_41	PF04404	N/A	N/A	ERF superfamily	ERF
COG	UHGV-1500872_41	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1500872_41	PF04404,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-1500872_42	phrog_674	168.0	0	N/A	unknown function
UniRef90	UHGV-1500872_42	UniRef90_UPI001C01FE50	290.0	0	N/A	N/A
eggNOG-mapper	UHGV-1500872_42	658655.HMPREF0988_02587	144.0	2e-38	N/A	N/A
Pfam	UHGV-1500872_42	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-1500872_42	PF07083	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1500872_44	PF12750	N/A	N/A	N/A	N/A
KOfam	UHGV-1500872_48	K07729	41.6	0.000000000024	K07729; putative transcriptional regulator	N/A
UniRef90	UHGV-1500872_48	UniRef90_A0A417QHZ7	103.0	1.95e-27	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1500872_48	706433.HMPREF9430_01294	83.6	5.16e-20	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1500872_48	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
KOfam	UHGV-1500872_49	K07729	56.5	6.6e-16	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-1500872_49	phrog_8	69.2	8.8e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-1500872_49	UniRef90_A0A417QIC0	192.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1500872_49	1111454.HMPREF1250_1028	89.0	3.35e-21	carbohydrate binding	N/A
PADLOC	UHGV-1500872_49	retron_type_VI_hth_cluster2_1	50.3	0.000000000000055	N/A	Retron
Pfam	UHGV-1500872_49	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1500872_49	COG2390	N/A	N/A	DNA-binding transcriptional regulator LsrR, DeoR family	N/A
structural_annotation	UHGV-1500872_49	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1500872_50	K07448	122.0	5.4e-36	mrr; restriction system protein	N/A
PHROG	UHGV-1500872_50	phrog_19856	56.0	3.9e-16	N/A	unknown function
UniRef90	UHGV-1500872_50	UniRef90_A0A143XQ54	218.0	0	DNA translocase FtsK	N/A
eggNOG-mapper	UHGV-1500872_50	1235790.C805_00010	184.0	0	Restriction endonuclease	N/A
PADLOC	UHGV-1500872_50	ZorD1_00005	74.0	1.4e-21	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
Pfam	UHGV-1500872_50	PF09397	N/A	N/A	Ftsk gamma domain	FtsK_gamma
Pfam	UHGV-1500872_50	PF04471	N/A	N/A	Restriction endonuclease	Mrr_cat
COG	UHGV-1500872_50	COG1787	N/A	N/A	Endonuclease, HJR/Mrr/RecB family	N/A
structural_annotation	UHGV-1500872_50	PF04471,PF09397,NF003162,COG1787	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1500872	Yes	35,706	40	92	1
UHGV-1836707	No	11,609	41	30	1
UHGV-0058324	No	11,535	41	30	1