vOTU vOTU-082904

vOTU: vOTU-082904

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-082904
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00162 → vSUBFAM-02752 → vGENUS-23442 → vSUBGEN-46048 → vOTU-082904
Host lineage	Bacteria → Firmicutes → Bacilli → Haloplasmatales_A → Turicibacteraceae → Turicibacter → Turicibacter sanguinis
Host range breadth	Species
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0111754
Biosample ID	N/A
Genome length (bp)	35,339 bps
CheckV completeness	91.24% (High-quality)
CDS count	63
CDS density	93.02%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage		Total connections		Host agreement
PHIST-predicted host lineage	Bacteria → Firmicutes → Bacilli → Haloplasmatales_A → Turicibacteraceae → Turicibacter → Turicibacter sanguinis	Total connections	11	Host agreement	81.82

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 91.24)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0111754_2	K01447	86.4	5.2e-25	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0111754_2	phrog_3088	225.2	0	amidase	lysis
UniRef90	UHGV-0111754_2	UniRef90_A0A6G2CIG0	451.0	0	SPOR domain-containing protein	N/A
eggNOG-mapper	UHGV-0111754_2	702450.CUW_0552	454.0	0	Ami_2	N/A
Pfam	UHGV-0111754_2	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0111754_2	PF05036	N/A	N/A	SPOR domain	SPOR
COG	UHGV-0111754_2	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-0111754_2	PF01510,PF08460,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-0111754_3	phrog_1129	85.0	5.3e-25	holin	lysis
UniRef90	UHGV-0111754_3	UniRef90_A0A6A8SI90	166.0	0	Holin	N/A
eggNOG-mapper	UHGV-0111754_3	702450.CUW_0551	166.0	0	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0111754_3	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0111754_3	PF06946	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0111754_4	1280689.AUJC01000007_gene3301	102.0	1.86e-27	N/A	N/A
KOfam	UHGV-0111754_6	K03651	46.7	0.00000000000046	cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]	N/A
UniRef90	UHGV-0111754_6	UniRef90_UPI0016833E0D	95.9	2.28e-19	metallophosphoesterase	N/A
eggNOG-mapper	UHGV-0111754_6	1449063.JMLS01000002_gene1488	64.7	0.00000000508	Calcineurin-like phosphoesterase	N/A
Pfam	UHGV-0111754_6	PF00149	N/A	N/A	Calcineurin-like phosphoesterase	Metallophos
COG	UHGV-0111754_6	COG1409	N/A	N/A	3',5'-cyclic AMP phosphodiesterase CpdA	N/A
PHROG	UHGV-0111754_8	phrog_21231	47.3	0.00000000000013	virion structural protein	head and packaging
UniRef90	UHGV-0111754_8	UniRef90_UPI001896CF9D	118.0	2.96e-25	BppU family phage baseplate upper protein	N/A
eggNOG-mapper	UHGV-0111754_8	1321778.HMPREF1982_03560	87.4	0.00000000000000146	N/A	N/A
Pfam	UHGV-0111754_8	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
COG	UHGV-0111754_8	COG2755	N/A	N/A	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	N/A
PHROG	UHGV-0111754_9	phrog_1067	181.2	0	minor head protein	head and packaging
UniRef90	UHGV-0111754_9	UniRef90_UPI0006C3E53B	1068.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0111754_9	702450.CUW_0547	240.0	0	N/A	N/A
Pfam	UHGV-0111754_9	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0111754_9	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0111754_9	COG4926	N/A	N/A	Phage-related protein	N/A
UniRef90	UHGV-0111754_10	UniRef90_A0A0E1KYU8	82.8	0.00000000000000106	Phage tail family protein	N/A
eggNOG-mapper	UHGV-0111754_10	536233.CLO_1578	65.1	0.00000000053	N/A	N/A
COG	UHGV-0111754_10	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0111754_10	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-0111754_11	K03529	48.7	4e-16	smc; chromosome segregation protein	N/A
PHROG	UHGV-0111754_11	phrog_1533	505.3	0	tail length tape measure protein	tail
UniRef90	UHGV-0111754_11	UniRef90_A0A844JPI8	1185.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0111754_11	190478.Q8SBP1_9CAUD	394.0	0	peptidoglycan catabolic process	N/A
Pfam	UHGV-0111754_11	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0111754_11	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
structural_annotation	UHGV-0111754_11	PF10145,PF16789,TIGR01760,TIGR02473,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0111754_14	phrog_88	108.8	5.1e-32	major tail protein	tail
UniRef90	UHGV-0111754_14	UniRef90_UPI001EEACF29	73.6	0.000000000000857	phage tail protein	N/A
eggNOG-mapper	UHGV-0111754_14	1391647.AVSV01000039_gene1105	95.1	9.67e-22	domain, Protein	N/A
NCBIFam	UHGV-0111754_14	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-0111754_14	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0111754_14	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0111754_15	phrog_78	45.6	0.0000000000015	tail terminator	connector
UniRef90	UHGV-0111754_15	UniRef90_A0A8A2NP64	78.2	2.48e-16	Prohead protease	N/A
eggNOG-mapper	UHGV-0111754_15	1196031.ALEG01000039_gene1821	51.2	0.00000117	N/A	N/A
structural_annotation	UHGV-0111754_15	PF05657	N/A	N/A	N/A	N/A
UniRef90	UHGV-0111754_16	UniRef90_A0A0A7RUF1	53.9	0.000000974	Head-tail adaptor protein	N/A
eggNOG-mapper	UHGV-0111754_16	536232.CLM_2051	50.8	0.00000246	N/A	N/A
structural_annotation	UHGV-0111754_16	PF04883,TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0111754_17	phrog_25	61.6	1.4e-17	head closure Hc1	connector
UniRef90	UHGV-0111754_17	UniRef90_A0A844JR27	245.0	0	Phage head closure protein	N/A
eggNOG-mapper	UHGV-0111754_17	1292035.H476_3504	101.0	3.1e-26	Phage head-tail joining protein	N/A
Pfam	UHGV-0111754_17	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0111754_17	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-0111754_17	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0111754_17	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0111754_18	phrog_40	52.1	0.00000000000001	head-tail adaptor Ad1	connector
UniRef90	UHGV-0111754_18	UniRef90_UPI0005DAB1A7	102.0	2.13e-26	head-tail connector protein	N/A
eggNOG-mapper	UHGV-0111754_18	1391647.AVSV01000039_gene1101	61.2	0.000000000058	Phage gp6-like head-tail connector protein	N/A
Pfam	UHGV-0111754_18	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
NCBIFam	UHGV-0111754_18	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-0111754_18	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0111754_19	phrog_10	111.2	1.1e-32	major head protein	head and packaging
UniRef90	UHGV-0111754_19	UniRef90_A0A6I1BCB3	835.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0111754_19	97138.C820_00614	483.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0111754_19	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0111754_19	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0111754_19	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0111754_19	PF05065,PF19962,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0111754_20	K06904	119.0	5.9e-35	N/A	N/A
PHROG	UHGV-0111754_20	phrog_80	144.7	9.09443e-43	head maturation protease	head and packaging
UniRef90	UHGV-0111754_20	UniRef90_A0A844JPI9	406.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0111754_20	1123288.SOV_2c03620	252.0	0	Caudovirus prohead serine protease	N/A
Pfam	UHGV-0111754_20	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0111754_20	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0111754_20	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0111754_20	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0111754_21	phrog_12	160.1	0	portal protein	head and packaging
UniRef90	UHGV-0111754_21	UniRef90_A0A844JPJ4	778.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0111754_21	1211817.CCAT010000007_gene1039	469.0	0	Portal protein	N/A
Pfam	UHGV-0111754_21	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0111754_21	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0111754_21	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0111754_22	phrog_9	275.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-0111754_22	UniRef90_A0A844JPW5	1131.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0111754_22	457396.CSBG_01046	753.0	0	Terminase	N/A
Pfam	UHGV-0111754_22	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0111754_22	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0111754_22	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0111754_22	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0111754_23	phrog_1066	62.7	6.1e-18	N/A	unknown function
UniRef90	UHGV-0111754_23	UniRef90_A0A844JSL5	195.0	0	Zinc-binding protein	N/A
eggNOG-mapper	UHGV-0111754_23	457396.CSBG_01045	139.0	9.0706e-42	N/A	N/A
structural_annotation	UHGV-0111754_23	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0111754_24	phrog_4581	113.8	1.4e-33	terminase small subunit	head and packaging
UniRef90	UHGV-0111754_24	UniRef90_A0A844JQT7	483.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0111754_24	1211817.CCAT010000007_gene1042	243.0	0	HNH endonuclease	N/A
Pfam	UHGV-0111754_24	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0111754_24	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0111754_24	PF13671,MF_03171,NF005251,NF008448,COG4639	N/A	N/A	N/A	N/A
PHROG	UHGV-0111754_25	phrog_309	141.8	2.90069e-42	terminase small subunit	head and packaging
UniRef90	UHGV-0111754_25	UniRef90_A0A844JNS5	288.0	0	Transposase	N/A
eggNOG-mapper	UHGV-0111754_25	500633.CLOHIR_01443	132.0	1.44e-37	HNH endonuclease	N/A
Pfam	UHGV-0111754_25	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
COG	UHGV-0111754_25	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
structural_annotation	UHGV-0111754_25	PF07141	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0111754_26	PF06530,MF_00245,NF008895,COG1595	N/A	N/A	N/A	N/A
PHROG	UHGV-0111754_27	phrog_2245	80.7	2.1e-23	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-0111754_27	UniRef90_A0A844JSD9	114.0	6e-31	MazG domain-containing protein	N/A
eggNOG-mapper	UHGV-0111754_27	1499683.CCFF01000005_gene41	55.8	0.000000007	N/A	N/A
structural_annotation	UHGV-0111754_27	PF12643,MF_01020,TIGR03188	N/A	N/A	N/A	N/A
PHROG	UHGV-0111754_28	phrog_7934	45.0	0.000000000002	N/A	unknown function
KOfam	UHGV-0111754_37	K03111	141.0	1.29998e-41	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0111754_37	phrog_44	159.1	0	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0111754_37	UniRef90_A0A6I1BC99	340.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0111754_37	702450.CUW_0167	184.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0111754_37	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0111754_37	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0111754_37	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0111754_37	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0111754_37	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0111754_39	K03091	41.4	0.000000000026	sigH; RNA polymerase sporulation-specific sigma factor	N/A
UniRef90	UHGV-0111754_39	UniRef90_A0A6I1BHM8	296.0	0	Sigma70_r2 domain-containing protein	N/A
PHROG	UHGV-0111754_40	phrog_398	189.7	0	N/A	unknown function
UniRef90	UHGV-0111754_40	UniRef90_UPI0006C0DACF	145.0	1.14e-39	putative HNHc nuclease	N/A
eggNOG-mapper	UHGV-0111754_40	33035.JPJF01000122_gene2462	117.0	1.93e-29	Putative HNHc nuclease	N/A
Pfam	UHGV-0111754_40	PF16784	N/A	N/A	Putative HNHc nuclease	HNHc_6
PHROG	UHGV-0111754_43	phrog_3584	225.8	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0111754_43	1321814.HMPREF9089_00921	209.0	0	N/A	N/A
structural_annotation	UHGV-0111754_43	PF21578	N/A	N/A	N/A	N/A
KOfam	UHGV-0111754_47	K07729	54.5	0.0000000000000029	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0111754_47	phrog_3	45.5	0.0000000000031	transcriptional repressor	transcription regulation
UniRef90	UHGV-0111754_47	UniRef90_A0A844JSP3	105.0	1.13e-28	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0111754_47	198094.BA_2318	48.5	0.000000765	sequence-specific DNA binding	N/A
Pfam	UHGV-0111754_47	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0111754_47	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0111754_47	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0111754_51	phrog_6996	72.8	4.6e-21	N/A	unknown function
UniRef90	UHGV-0111754_55	UniRef90_A0A844JRB6	160.0	0	Helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0111754_55	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
KOfam	UHGV-0111754_57	K22300	65.7	1e-18	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0111754_57	phrog_2328	58.6	1.1e-16	transcriptional repressor	transcription regulation
UniRef90	UHGV-0111754_57	UniRef90_A0A844JTA0	223.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0111754_57	1196322.A370_04535	131.0	3.17e-38	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0111754_57	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0111754_57	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
KOfam	UHGV-0111754_59	K18831	46.2	0.00000000000085	higA; HTH-type transcriptional regulator / antitoxin HigA	N/A
UniRef90	UHGV-0111754_59	UniRef90_A0A844JQA5	137.0	2.97005e-41	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0111754_59	1540257.JQMW01000013_gene774	58.9	0.0000000000923	N/A	N/A
Pfam	UHGV-0111754_59	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0111754_59	PF21291,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0111754_60	K22299	46.8	1.5e-16	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0111754_60	phrog_8	67.5	3.8e-21	transcriptional regulator	transcription regulation
UniRef90	UHGV-0111754_60	UniRef90_A0A844JSD7	515.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0111754_60	445971.ANASTE_01585	70.1	0.00000000000741	sequence-specific DNA binding	N/A
Pfam	UHGV-0111754_60	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0111754_60	COG1426	N/A	N/A	N/A	N/A
KOfam	UHGV-0111754_61	K14059	280.9	0	int; integrase	N/A
PHROG	UHGV-0111754_61	phrog_1	245.5	0	integrase	integration and excision
UniRef90	UHGV-0111754_61	UniRef90_A0A844JU38	715.0	0	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0111754_61	702450.CUW_0508	373.0	0	Phage integrase family	N/A
Pfam	UHGV-0111754_61	PF14657	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_4
Pfam	UHGV-0111754_61	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0111754_61	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0111754_61	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0111754_61	PF00589,PF02920,PF14659,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0111754	Yes	35,339	34	91	1
UHGV-1859134	No	16,920	36	44	1