vOTU vOTU-082905

vOTU: vOTU-082905

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-082905
Number of genomes	3
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira → Lachnospira sp000436475
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00117 → vGENUS-00572 → vSUBGEN-46047 → vOTU-082905
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira
Host range breadth	Genus
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-2030334
Biosample ID	SAMEA2737693
Genome length (bp)	35,383 bps
CheckV completeness	93.36% (High-quality)
CDS count	46
CDS density	92.32%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira	Total connections	937	Host agreement	98.72
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira → Lachnospira sp000436475	Total connections	125	Host agreement	92

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 93.36)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-2030334_1	K07273	91.8	9.3e-27	acm; lysozyme	N/A
PHROG	UHGV-2030334_1	phrog_291	78.4	1.1e-22	endolysin	lysis
UniRef90	UHGV-2030334_1	UniRef90_A0A174PB89	661.0	0	Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	N/A
eggNOG-mapper	UHGV-2030334_1	469596.HMPREF9488_01959	138.0	5.44e-35	Glycosyl hydrolase family 25	N/A
Pfam	UHGV-2030334_1	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-2030334_1	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-2030334_1	PF01183,PF11623,COG3757,COG2139	N/A	N/A	N/A	N/A
PHROG	UHGV-2030334_2	phrog_199	76.2	3.7e-22	holin	lysis
UniRef90	UHGV-2030334_2	UniRef90_A0A3B8UJ75	268.0	0	Holin	N/A
eggNOG-mapper	UHGV-2030334_2	483218.BACPEC_01140	213.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-2030334_2	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-2030334_2	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-2030334_2	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-2030334_2	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-2030334_5	phrog_6616	166.8	0	tail protein	tail
UniRef90	UHGV-2030334_5	UniRef90_A0A8D9PGP3	541.0	0	Minor structural protein	N/A
eggNOG-mapper	UHGV-2030334_5	1294142.CINTURNW_1706	266.0	0	Phage minor structural protein	N/A
COG	UHGV-2030334_5	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-2030334_5	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-2030334_6	phrog_1401	49.3	0.000000000000076	N/A	unknown function
UniRef90	UHGV-2030334_6	UniRef90_UPI001D00FC65	59.7	0.00000000842	N/A	N/A
eggNOG-mapper	UHGV-2030334_6	1294142.CINTURNW_1041	52.8	0.000000645	N/A	N/A
structural_annotation	UHGV-2030334_6	PF07761	N/A	N/A	N/A	N/A
PHROG	UHGV-2030334_7	phrog_1194	78.8	5.5e-23	N/A	unknown function
eggNOG-mapper	UHGV-2030334_7	33035.JPJF01000093_gene2242	156.0	0	N/A	N/A
structural_annotation	UHGV-2030334_7	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-2030334_8	phrog_1535	282.9	0	tail length tape measure protein	tail
UniRef90	UHGV-2030334_8	UniRef90_A0A1C5PIN9	486.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-2030334_8	1280689.AUJC01000003_gene976	374.0	0	phage tail tape measure protein	N/A
COG	UHGV-2030334_8	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-2030334_8	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-2030334_9	phrog_8355	100.9	4.1e-30	N/A	unknown function
UniRef90	UHGV-2030334_9	UniRef90_UPI0006BBA9AA	132.0	1e-37	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-2030334_9	1415775.U729_2613	110.0	4.87e-30	N/A	N/A
Pfam	UHGV-2030334_9	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-2030334_9	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-2030334_10	phrog_8300	69.8	2.9e-20	N/A	unknown function
eggNOG-mapper	UHGV-2030334_10	1151292.QEW_2425	70.1	0.0000000000000419	N/A	N/A
structural_annotation	UHGV-2030334_10	PF06896	N/A	N/A	N/A	N/A
PHROG	UHGV-2030334_11	phrog_820	108.4	4.2e-32	major tail protein	tail
UniRef90	UHGV-2030334_11	UniRef90_T3DDR1	186.0	0	Phage major tail 2 family protein	N/A
eggNOG-mapper	UHGV-2030334_11	1151292.QEW_2426	186.0	0	N/A	N/A
structural_annotation	UHGV-2030334_11	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-2030334_12	phrog_2595	101.9	4.7e-30	head-tail connector protein	connector
UniRef90	UHGV-2030334_12	UniRef90_UPI001D068DAC	148.0	1.97583e-43	minor capsid protein	N/A
eggNOG-mapper	UHGV-2030334_12	742740.HMPREF9474_03510	130.0	4.55e-37	N/A	N/A
Pfam	UHGV-2030334_12	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-2030334_12	PF12691,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-2030334_13	phrog_556	57.3	2.1e-16	minor head protein	head and packaging
eggNOG-mapper	UHGV-2030334_13	483218.BACPEC_01151	139.0	7.36999e-41	N/A	N/A
PHROG	UHGV-2030334_14	phrog_8710	127.9	3.3e-38	N/A	unknown function
eggNOG-mapper	UHGV-2030334_14	742740.HMPREF9474_03508	125.0	7.06e-36	N/A	N/A
structural_annotation	UHGV-2030334_14	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-2030334_15	phrog_541	65.9	6.1e-19	head-tail adaptor	connector
eggNOG-mapper	UHGV-2030334_15	33035.JPJF01000093_gene2250	144.0	4.38606e-43	N/A	N/A
PHROG	UHGV-2030334_16	phrog_1378	74.2	1.2e-21	N/A	unknown function
eggNOG-mapper	UHGV-2030334_16	742740.HMPREF9474_03506	69.7	0.0000000000000373	N/A	N/A
PHROG	UHGV-2030334_17	phrog_422	359.5	0	major head protein	head and packaging
UniRef90	UHGV-2030334_17	UniRef90_A0A356C4N2	560.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-2030334_17	742740.HMPREF9474_03505	475.0	0	N/A	N/A
PHROG	UHGV-2030334_18	phrog_2303	148.1	5.60519e-44	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-2030334_18	483218.BACPEC_01156	147.0	1.76003e-41	N/A	N/A
PHROG	UHGV-2030334_19	phrog_355	64.4	1.7e-18	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2030334_19	UniRef90_A0A415G5B2	145.0	1.52742e-43	N/A	N/A
eggNOG-mapper	UHGV-2030334_19	1256908.HMPREF0373_00479	143.0	1.98984e-43	N/A	N/A
Pfam	UHGV-2030334_19	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-2030334_19	PF14359	N/A	N/A	N/A	N/A
UniRef90	UHGV-2030334_21	UniRef90_UPI00066D3680	130.0	1.34e-33	minor capsid protein	N/A
eggNOG-mapper	UHGV-2030334_21	1194526.A284_07065	111.0	5.79e-27	head morphogenesis protein, SPP1 gp7 family	N/A
COG	UHGV-2030334_21	COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-2030334_22	phrog_581	198.3	0	minor head protein	head and packaging
UniRef90	UHGV-2030334_22	UniRef90_A0A3D5LQU4	487.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-2030334_22	33035.JPJF01000093_gene2255	379.0	0	N/A	N/A
Pfam	UHGV-2030334_22	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-2030334_22	COG5585	N/A	N/A	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	N/A
structural_annotation	UHGV-2030334_22	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-2030334_23	phrog_533	274.1	0	portal protein	head and packaging
UniRef90	UHGV-2030334_23	UniRef90_A0A3D5LTG9	966.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-2030334_23	33035.JPJF01000093_gene2257	571.0	0	N/A	N/A
structural_annotation	UHGV-2030334_23	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-2030334_24	K06909	104.4	1.4e-30	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-2030334_24	phrog_2	73.8	3.4e-21	terminase large subunit	head and packaging
UniRef90	UHGV-2030334_24	UniRef90_A0A413YU24	930.0	0	Terminase	N/A
eggNOG-mapper	UHGV-2030334_24	1391647.AVSV01000003_gene1802	526.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-2030334_24	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-2030334_24	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-2030334_24	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-2030334_25	phrog_2538	90.7	1.3e-26	terminase small subunit	head and packaging
UniRef90	UHGV-2030334_25	UniRef90_A0A1C5UE81	145.0	2.05991e-42	HTH_Tnp_1_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-2030334_25	1139219.I569_01387	62.8	0.0000000000598	Helix-turn-helix of insertion element transposase	N/A
Pfam	UHGV-2030334_25	PF13022	N/A	N/A	Helix-turn-helix of insertion element transposase	HTH_Tnp_1_2
structural_annotation	UHGV-2030334_25	PF13022	N/A	N/A	N/A	N/A
PHROG	UHGV-2030334_26	phrog_36	41.5	0.000000000021	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-2030334_26	397290.C810_01391	140.0	1.22e-40	N/A	N/A
structural_annotation	UHGV-2030334_26	PF02996	N/A	N/A	N/A	N/A
UniRef90	UHGV-2030334_27	UniRef90_A0A417WAJ1	109.0	2.76e-29	HNH endonuclease	N/A
eggNOG-mapper	UHGV-2030334_27	1235800.C819_02254	100.0	3.25e-26	HNH nucleases	N/A
PHROG	UHGV-2030334_28	phrog_355	71.1	1.3e-20	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2030334_28	UniRef90_A0A1C5VVJ6	73.6	0.0000000000000291	Nucleoside 2-deoxyribosyltransferase	N/A
eggNOG-mapper	UHGV-2030334_28	1116375.VEJY3_09830	63.2	0.0000000000502	N/A	N/A
Pfam	UHGV-2030334_28	PF14359	N/A	N/A	N/A	DUF4406
COG	UHGV-2030334_28	COG3613	N/A	N/A	Nucleoside 2-deoxyribosyltransferase	N/A
structural_annotation	UHGV-2030334_28	PF14359,TIGR03646,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-2030334_29	phrog_15077	105.1	9.3e-33	N/A	unknown function
UniRef90	UHGV-2030334_29	UniRef90_A0A174WLY0	191.0	0	N/A	N/A
eggNOG-mapper	UHGV-2030334_29	483218.BACPEC_01165	196.0	0	N/A	N/A
structural_annotation	UHGV-2030334_29	PF11300,NF033725	N/A	N/A	N/A	N/A
PHROG	UHGV-2030334_30	phrog_8470	278.0	0	N/A	unknown function
UniRef90	UHGV-2030334_30	UniRef90_UPI001D08730A	179.0	3.36312e-44	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-2030334_30	483218.BACPEC_01166	365.0	0	PcfJ-like protein	N/A
Pfam	UHGV-2030334_30	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-2030334_30	PF14284	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2030334_31	483218.BACPEC_01167	196.0	0	N/A	N/A
structural_annotation	UHGV-2030334_32	PF02179,NF011863	N/A	N/A	N/A	N/A
KOfam	UHGV-2030334_33	K03469	67.8	2.3e-19	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-2030334_33	phrog_531	61.0	2.2e-17	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2030334_33	UniRef90_A0A3B8UHR5	312.0	0	RNase H type-1 domain-containing protein	N/A
eggNOG-mapper	UHGV-2030334_33	941824.TCEL_01720	77.0	9.26e-16	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	N/A
Pfam	UHGV-2030334_33	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-2030334_33	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-2030334_33	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
PHROG	UHGV-2030334_34	phrog_3584	157.2	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-2030334_34	642492.Clole_0725	145.0	5.70001e-40	N/A	N/A
structural_annotation	UHGV-2030334_34	PF21578	N/A	N/A	N/A	N/A
PHROG	UHGV-2030334_38	phrog_20040	40.7	0.000000000025	N/A	unknown function
eggNOG-mapper	UHGV-2030334_38	1538644.KO02_12130	104.0	1.22e-28	N/A	N/A
PHROG	UHGV-2030334_39	phrog_478	127.1	6.8e-38	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-2030334_39	UniRef90_A0A373Q857	176.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-2030334_39	478749.BRYFOR_08526	102.0	4.29e-26	N/A	N/A
UniRef90	UHGV-2030334_41	UniRef90_A0A356C6B4	126.0	7.95e-37	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-2030334_41	706433.HMPREF9430_01294	83.2	2.26e-20	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-2030334_41	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-2030334_41	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-2030334_42	K22299	58.7	1.4e-16	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-2030334_42	phrog_8	70.5	3.3e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-2030334_42	UniRef90_A0A413YU20	232.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-2030334_42	553973.CLOHYLEM_07297	87.8	8.91e-21	Transcriptional	N/A
PADLOC	UHGV-2030334_42	retron_type_VI_hth_cluster2_1	53.2	0.0000000000000055	N/A	Retron
Pfam	UHGV-2030334_42	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2030334_42	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-2030334_42	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-2030334_43	phrog_20886	47.1	0.00000000000028	N/A	unknown function
UniRef90	UHGV-2030334_43	UniRef90_A0A660M5N1	55.8	0.0000000122	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-2030334_43	476272.RUMHYD_02825	58.5	0.000000000767	N/A	N/A
structural_annotation	UHGV-2030334_43	PF06114	N/A	N/A	N/A	N/A
PHROG	UHGV-2030334_44	phrog_3845	67.2	3.2e-19	N/A	unknown function
eggNOG-mapper	UHGV-2030334_44	768710.DesyoDRAFT_5205	108.0	6.62e-27	PFAM Tellurite resistance protein TerB	N/A
COG	UHGV-2030334_44	COG3793	N/A	N/A	Tellurite resistance protein TerB	N/A
PHROG	UHGV-2030334_45	phrog_1847	341.7	0	N/A	unknown function
UniRef90	UHGV-2030334_45	UniRef90_A0A174S171	676.0	0	Membrane-bound metallopeptidase	N/A
eggNOG-mapper	UHGV-2030334_45	483218.BACPEC_01182	592.0	0	T5orf172	N/A
Pfam	UHGV-2030334_45	PF13455	N/A	N/A	Meiotically up-regulated gene 113	MUG113
COG	UHGV-2030334_45	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-2030334_45	PF13250,NF041454	N/A	N/A	N/A	N/A
PHROG	UHGV-2030334_46	phrog_2158	188.2	0	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-2030334_46	UniRef90_B0MB90	249.0	0	Abi-like protein	N/A
eggNOG-mapper	UHGV-2030334_46	411490.ANACAC_00817	249.0	0	Abi-like protein	N/A
PADLOC	UHGV-2030334_46	AbiD	131.4	1.3e-38	AbiD	Abi
Pfam	UHGV-2030334_46	PF07751	N/A	N/A	Abi-like protein	Abi_2
COG	UHGV-2030334_46	COG4823	N/A	N/A	Abortive infection bacteriophage resistance protein	N/A
structural_annotation	UHGV-2030334_46	PF07751,COG4823	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-2030334	Yes	35,383	37	93	1
UHGV-0009268	No	26,910	38	71	1
UHGV-0011292	No	26,866	38	71	1