vOTU vOTU-083002

vOTU: vOTU-083002

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-083002
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00033 → vGENUS-10366 → vSUBGEN-13460 → vOTU-083002
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium → Faecalibacterium sp900539945
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1517862
Biosample ID	SAMEA4545553
Genome length (bp)	32,551 bps
CheckV completeness	93.68% (High-quality)
CDS count	52
CDS density	90.56%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium → Faecalibacterium sp900539945	Total connections	18	Host agreement	77.78
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium → Faecalibacterium sp900539945	Total connections	27	Host agreement	92.59

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 93.68)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1517862_1	K14059	159.9	0	int; integrase	N/A
PHROG	UHGV-1517862_1	phrog_1	143.0	2.79979e-42	integrase	integration and excision
UniRef90	UHGV-1517862_1	UniRef90_A0A316RZQ6	543.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-1517862_1	693746.OBV_25530	281.0	0	Phage integrase family	N/A
Pfam	UHGV-1517862_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1517862_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1517862_1	PF00589,PF14659,MF_01808,NF007246,COG4973	N/A	N/A	N/A	N/A
UniRef90	UHGV-1517862_2	UniRef90_A0A542AKI0	68.9	0.00000000000793	Preprotein translocase subunit SecB	N/A
eggNOG-mapper	UHGV-1517862_2	1280668.ATVT01000017_gene1594	68.9	0.000000000000585	N/A	N/A
structural_annotation	UHGV-1517862_2	PF02556,MF_00821,NF004392,COG1952	N/A	N/A	N/A	N/A
KOfam	UHGV-1517862_3	K23779	70.6	3.4e-20	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
PHROG	UHGV-1517862_3	phrog_1373	63.2	3.8e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-1517862_3	UniRef90_UPI001CBC9967	195.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1517862_3	748224.HMPREF9436_03379	107.0	4.81e-28	sequence-specific DNA binding	N/A
PADLOC	UHGV-1517862_3	retron_type_VI_hth_cluster2_1	49.1	0.00000000000011	N/A	Retron
Pfam	UHGV-1517862_3	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1517862_3	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
PHROG	UHGV-1517862_4	phrog_2523	42.7	0.0000000000081	N/A	unknown function
structural_annotation	UHGV-1517862_4	PF05973,TIGR02683,COG4683	N/A	N/A	N/A	N/A
PHROG	UHGV-1517862_5	phrog_22683	156.7	0	N/A	unknown function
UniRef90	UHGV-1517862_5	UniRef90_A0A3E2U205	171.0	0	N/A	N/A
eggNOG-mapper	UHGV-1517862_5	1008453.HMPREF9957_0722	140.0	2.21966e-42	N/A	N/A
AcrCatalog	UHGV-1517862_5	cluster_3962	132.0	9.94922e-44	NA	N/A
Pfam	UHGV-1517862_5	PF13783	N/A	N/A	N/A	DUF4177
structural_annotation	UHGV-1517862_5	PF13783,NF008362,COG3499	N/A	N/A	N/A	N/A
KOfam	UHGV-1517862_6	K01356	151.0	1.26117e-44	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-1517862_6	phrog_4	126.1	3.3e-37	transcriptional repressor	transcription regulation
UniRef90	UHGV-1517862_6	UniRef90_A0A291T8H9	283.0	0	Repressor LexA	N/A
eggNOG-mapper	UHGV-1517862_6	748224.HMPREF9436_01793	169.0	0	N/A	N/A
Pfam	UHGV-1517862_6	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-1517862_6	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-1517862_6	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1517862_6	PF00717,PF01381,MF_00015,TIGR00498,COG1974	N/A	N/A	N/A	N/A
UniRef90	UHGV-1517862_7	UniRef90_B0PAK0	72.8	0.00000000000000203	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-1517862_7	445972.ANACOL_01800	72.8	3.41e-16	N/A	N/A
Pfam	UHGV-1517862_7	PF05339	N/A	N/A	N/A	DUF739
COG	UHGV-1517862_7	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-1517862_7	PF05339,NF002773,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1517862_8	748224.HMPREF9436_01443	260.0	0	vancomycin resistance protein	N/A
COG	UHGV-1517862_8	COG2720	N/A	N/A	Vancomycin resistance protein YoaR (function unknown), contains peptidoglycan-binding and VanW domains	N/A
KOfam	UHGV-1517862_10	K18830	71.1	1.7e-20	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1517862_10	phrog_8	57.3	1.5e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-1517862_10	UniRef90_A0A564SVW9	209.0	0	HTH-type transcriptional regulator ImmR	N/A
eggNOG-mapper	UHGV-1517862_10	748224.HMPREF9436_01444	187.0	0	N/A	N/A
Pfam	UHGV-1517862_10	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1517862_10	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1517862_10	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1517862_12	PF13601,MF_01819,TIGR03433,COG1695	N/A	N/A	N/A	N/A
PHROG	UHGV-1517862_16	phrog_130	161.0	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1517862_16	UniRef90_A0A291T8B4	338.0	0	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-1517862_16	718252.FP2_06840	290.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-1517862_16	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
COG	UHGV-1517862_16	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-1517862_16	PF02498,TIGR02681,COG3617	N/A	N/A	N/A	N/A
PHROG	UHGV-1517862_17	phrog_2232	190.4	0	N/A	unknown function
UniRef90	UHGV-1517862_17	UniRef90_A0A6A7K9D3	166.0	0	N/A	N/A
eggNOG-mapper	UHGV-1517862_17	748224.HMPREF9436_01448	540.0	0	N/A	N/A
Pfam	UHGV-1517862_17	PF14337	N/A	N/A	Abortive infection alpha	Abi_alpha
structural_annotation	UHGV-1517862_17	PF14337,TIGR03899	N/A	N/A	N/A	N/A
PHROG	UHGV-1517862_19	phrog_373	85.8	6.9e-25	anti-repressor	transcription regulation
UniRef90	UHGV-1517862_19	UniRef90_UPI0012DF9177	100.0	4.31e-26	Rha family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1517862_19	748224.HMPREF9436_01449	144.0	2.03048e-42	Phage regulatory protein Rha (Phage_pRha)	N/A
Pfam	UHGV-1517862_19	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
NCBIFam	UHGV-1517862_19	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
COG	UHGV-1517862_19	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
UniRef90	UHGV-1517862_21	UniRef90_A0A2A7BGV7	76.3	1.58e-16	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-1517862_21	PF05339	N/A	N/A	N/A	DUF739
COG	UHGV-1517862_21	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-1517862_21	PF05339,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-1517862_25	phrog_1733	71.9	1.1e-20	N/A	unknown function
eggNOG-mapper	UHGV-1517862_25	398512.JQKC01000009_gene428	68.2	0.00000000281	DNA binding	N/A
COG	UHGV-1517862_25	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-1517862_25	PF03677	N/A	N/A	N/A	N/A
PHROG	UHGV-1517862_26	phrog_38771	55.1	0.000000000000001	N/A	unknown function
PHROG	UHGV-1517862_27	phrog_674	136.0	2.9e-40	N/A	unknown function
UniRef90	UHGV-1517862_27	UniRef90_A0A3A6E846	430.0	0	N/A	N/A
eggNOG-mapper	UHGV-1517862_27	556268.OFAG_00840	78.6	0.0000000000000563	N/A	N/A
Pfam	UHGV-1517862_27	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-1517862_27	PF07083	N/A	N/A	N/A	N/A
PHROG	UHGV-1517862_28	phrog_2760	185.3	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1517862_28	UniRef90_A0A2A7BH07	399.0	0	Phage recombination protein Bet	N/A
eggNOG-mapper	UHGV-1517862_28	1235794.C811_01355	160.0	9.80909e-45	RecT family	N/A
Pfam	UHGV-1517862_28	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-1517862_28	TIGR01913.1	N/A	N/A	phage recombination protein Bet	N/A
COG	UHGV-1517862_28	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-1517862_28	PF03837,TIGR01913,COG3723	N/A	N/A	N/A	N/A
KOfam	UHGV-1517862_29	K03111	40.9	0.000000000042	ssb; single-strand DNA-binding protein	N/A
UniRef90	UHGV-1517862_29	UniRef90_UPI001CBB85F6	107.0	4.07e-26	single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1517862_29	PF00436,MF_00720,NF004512,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1517862_30	phrog_2514	73.0	3.4e-21	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1517862_30	UniRef90_A0A291T890	323.0	0	DnaB_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-1517862_30	445974.CLORAM_02950	95.5	1.74e-20	N/A	N/A
structural_annotation	UHGV-1517862_30	PF09681,MF_01819,TIGR01714,TIGR01446,COG3935	N/A	N/A	N/A	N/A
PHROG	UHGV-1517862_31	phrog_843	59.4	2.4e-17	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1517862_31	UniRef90_A0A6M0RCC5	106.0	5.34e-26	Holliday junction resolvase RecU	N/A
eggNOG-mapper	UHGV-1517862_31	386415.NT01CX_2186	110.0	4.26e-28	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	N/A
structural_annotation	UHGV-1517862_31	PF03838,MF_00130,NF002581,COG3331	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1517862_32	PF07374,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-1517862_33	phrog_338	57.8	2.3e-16	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1517862_33	UniRef90_UPI0015F33F36	214.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1517862_33	748224.HMPREF9436_01465	228.0	0	N/A	N/A
structural_annotation	UHGV-1517862_33	PF01844	N/A	N/A	N/A	N/A
UniRef90	UHGV-1517862_34	UniRef90_R6GFM0	88.2	5.27e-21	Conserved domain protein	N/A
structural_annotation	UHGV-1517862_34	PF19962	N/A	N/A	N/A	N/A
PHROG	UHGV-1517862_35	phrog_9	172.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-1517862_35	UniRef90_UPI001F1A3C47	624.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-1517862_35	748224.HMPREF9436_01467	834.0	0	phage terminase, large subunit	N/A
Pfam	UHGV-1517862_35	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1517862_35	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1517862_35	PF20441,PF03354,MF_04146,NF033889,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1517862_36	phrog_104	219.5	0	portal protein	head and packaging
UniRef90	UHGV-1517862_36	UniRef90_A0A3E2U200	760.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1517862_36	748224.HMPREF9436_01468	838.0	0	Phage portal protein, SPP1 Gp6-like	N/A
structural_annotation	UHGV-1517862_36	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1517862_37	phrog_193	120.7	1.6e-35	head maturation protease	head and packaging
UniRef90	UHGV-1517862_37	UniRef90_A0A6N8H118	337.0	0	CdiA_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1517862_37	748224.HMPREF9436_01469	404.0	0	N/A	N/A
Pfam	UHGV-1517862_37	PF03496	N/A	N/A	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
COG	UHGV-1517862_37	COG5529	N/A	N/A	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	N/A
structural_annotation	UHGV-1517862_37	PF03496,MF_04139,NF040688	N/A	N/A	N/A	N/A
PHROG	UHGV-1517862_39	phrog_1374	60.7	1.6e-17	N/A	unknown function
UniRef90	UHGV-1517862_39	UniRef90_A0A8F5MGK2	63.5	0.00000000000454	Membrane protein	N/A
eggNOG-mapper	UHGV-1517862_39	1519439.JPJG01000059_gene1913	60.8	0.0000000000111	N/A	N/A
structural_annotation	UHGV-1517862_39	TIGR04438	N/A	N/A	N/A	N/A
PHROG	UHGV-1517862_40	phrog_1793	91.2	1.4e-26	head scaffolding protein	head and packaging
UniRef90	UHGV-1517862_40	UniRef90_UPI001C03A2F1	122.0	1.65e-32	N/A	N/A
eggNOG-mapper	UHGV-1517862_40	1123263.AUKY01000068_gene501	133.0	2.24e-37	N/A	N/A
structural_annotation	UHGV-1517862_40	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-1517862_41	phrog_10	141.5	6.8005e-42	major head protein	head and packaging
UniRef90	UHGV-1517862_41	UniRef90_A0A1Y4TJU9	459.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1517862_41	748224.HMPREF9436_00690	483.0	0	Phage capsid family	N/A
Pfam	UHGV-1517862_41	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1517862_41	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1517862_41	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1517862_41	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1517862_42	phrog_137	66.0	4.8e-19	head-tail adaptor Ad1	connector
UniRef90	UHGV-1517862_42	UniRef90_E2ZGA8	215.0	0	Phage protein Gp19/Gp15/Gp42	N/A
eggNOG-mapper	UHGV-1517862_42	762211.BSTEL_0628	50.8	0.00000285	Phage protein Gp19/Gp15/Gp42	N/A
structural_annotation	UHGV-1517862_42	PF09355	N/A	N/A	N/A	N/A
PHROG	UHGV-1517862_43	phrog_501	71.8	9.9e-21	head closure Hc1	connector
UniRef90	UHGV-1517862_43	UniRef90_R6CEU4	119.0	1.9e-32	N/A	N/A
eggNOG-mapper	UHGV-1517862_43	748224.HMPREF9436_00693	184.0	0	N/A	N/A
structural_annotation	UHGV-1517862_43	PF12206,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1517862_44	phrog_387	72.9	2.9e-21	neck protein	connector
UniRef90	UHGV-1517862_44	UniRef90_A0A4U9XLC1	69.7	0.00000000000014	N/A	N/A
eggNOG-mapper	UHGV-1517862_44	748224.HMPREF9436_00694	161.0	0	N/A	N/A
PHROG	UHGV-1517862_45	phrog_123	64.0	2.7e-18	tail terminator	connector
eggNOG-mapper	UHGV-1517862_45	748224.HMPREF9436_00695	112.0	1.19e-30	N/A	N/A
structural_annotation	UHGV-1517862_45	PF06141	N/A	N/A	N/A	N/A
PHROG	UHGV-1517862_46	phrog_117	182.4	0	major tail protein	tail
UniRef90	UHGV-1517862_46	UniRef90_E2ZGB2	296.0	0	Prophage LambdaSa1, structural protein	N/A
eggNOG-mapper	UHGV-1517862_46	748224.HMPREF9436_00696	296.0	0	domain, Protein	N/A
COG	UHGV-1517862_46	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1517862_46	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1517862_47	phrog_1526	74.2	1.5e-21	N/A	unknown function
UniRef90	UHGV-1517862_47	UniRef90_F3MWB0	61.6	0.000000000149	N/A	N/A
structural_annotation	UHGV-1517862_48	PF17318	N/A	N/A	N/A	N/A
PHROG	UHGV-1517862_49	phrog_28775	280.2	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1517862_49	748224.HMPREF9436_00699	1112.0	0	Phage tail tape measure protein, TP901 family	N/A
COG	UHGV-1517862_49	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-1517862_50	phrog_33	57.5	3.2e-16	distal tail protein Dit	tail
UniRef90	UHGV-1517862_50	UniRef90_A0A564T4N7	388.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-1517862_50	748224.HMPREF9436_00700	427.0	0	Phage tail protein	N/A
structural_annotation	UHGV-1517862_50	PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1517862_51	phrog_538	146.8	1.30321e-43	minor tail protein	tail
UniRef90	UHGV-1517862_51	UniRef90_UPI001C0C4E4F	68.9	0.00000000242	siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-1517862_51	748224.HMPREF9436_03324	160.0	8.68805e-44	N/A	N/A
Pfam	UHGV-1517862_51	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-1517862_51	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-1517862_52	phrog_9534	253.8	0	head protein	head and packaging
eggNOG-mapper	UHGV-1517862_52	748224.HMPREF9436_00702	291.0	0	COG NOG18825 non supervised orthologous group	N/A
structural_annotation	UHGV-1517862_52	PF21567	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1517862	Yes	32,551	59	94	1
UHGV-1448552	No	24,572	62	71	1
UHGV-1728650	No	15,137	63	43	1