vOTU vOTU-083015

vOTU: vOTU-083015

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-083015
Number of genomes	1
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00213 → vGENUS-00449 → vSUBGEN-37661 → vOTU-083015
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0018405
Biosample ID	N/A
Genome length (bp)	42,319 bps
CheckV completeness	99.12% (High-quality)
CDS count	63
CDS density	91.93%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83	Total connections	149	Host agreement	92.62
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.12)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0018405_2	UniRef90_A0A8D9UH91	275.0	0	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0018405_2	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0018405_2	PF01381,PF21715,NF041951,TIGR04176,COG1476,COG1654	N/A	N/A	N/A	N/A
PHROG	UHGV-0018405_4	phrog_22529	46.8	0.00000000000036	N/A	unknown function
UniRef90	UHGV-0018405_4	UniRef90_A0A8D9UHA1	209.0	0	3D containing protein	N/A
eggNOG-mapper	UHGV-0018405_4	658088.HMPREF0987_02675	65.1	0.000000000483	peptidase	N/A
Pfam	UHGV-0018405_4	PF06725	N/A	N/A	3D domain	3D
COG	UHGV-0018405_4	COG3584	N/A	N/A	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	N/A
structural_annotation	UHGV-0018405_4	COG3584	N/A	N/A	N/A	N/A
UniRef90	UHGV-0018405_6	UniRef90_A0A8D9PDM8	134.0	6.54e-40	Pyocin activator protein	N/A
KOfam	UHGV-0018405_8	K22300	40.3	0.000000000055	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
Pfam	UHGV-0018405_8	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0018405_8	COG1426	N/A	N/A	N/A	N/A
UniRef90	UHGV-0018405_9	UniRef90_A0A8D9PDN2	130.0	2.21e-38	DNA-binding protein	N/A
structural_annotation	UHGV-0018405_9	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0018405_10	phrog_8	46.4	0.00000000000081	transcriptional regulator	transcription regulation
UniRef90	UHGV-0018405_10	UniRef90_A0A8D9UHB1	188.0	0	Repressor protein CI	N/A
eggNOG-mapper	UHGV-0018405_10	1297617.JPJD01000059_gene2644	54.3	0.000000111	addiction module antidote protein HigA	N/A
Pfam	UHGV-0018405_10	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0018405_10	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-0018405_10	PF12844,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0018405_12	UniRef90_A0A8D9UHA6	248.0	0	Helix-turn-helix XRE-family like protein	N/A
Pfam	UHGV-0018405_12	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0018405_12	PF12844,MF_00535,TIGR03070,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0018405_13	K14059	150.6	1.54143e-44	int; integrase	N/A
PHROG	UHGV-0018405_13	phrog_1	168.4	0	integrase	integration and excision
UniRef90	UHGV-0018405_13	UniRef90_A0A8D9UGU2	648.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0018405_13	693746.OBV_41260	301.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0018405_13	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0018405_13	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0018405_13	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0018405_14	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-0018405_15	phrog_20016	196.5	0	N/A	unknown function
UniRef90	UHGV-0018405_15	UniRef90_A0A285PT46	191.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0018405_15	397290.C810_05214	164.0	0	N/A	N/A
structural_annotation	UHGV-0018405_15	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0018405_16	phrog_16490	159.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0018405_16	1408437.JNJN01000043_gene803	145.0	1.67e-40	N/A	N/A
PHROG	UHGV-0018405_17	phrog_22984	82.4	4.2e-24	N/A	unknown function
PHROG	UHGV-0018405_18	phrog_21718	84.7	1.1e-24	N/A	unknown function
eggNOG-mapper	UHGV-0018405_18	397290.C810_05210	67.8	0.0000000000036	N/A	N/A
PHROG	UHGV-0018405_19	phrog_3754	92.6	4e-27	N/A	unknown function
eggNOG-mapper	UHGV-0018405_19	476272.RUMHYD_01764	160.0	0	N/A	N/A
PHROG	UHGV-0018405_20	phrog_22978	919.3	0	N/A	unknown function
UniRef90	UHGV-0018405_20	UniRef90_R5G452	330.0	0	PBECR5 domain-containing protein	N/A
eggNOG-mapper	UHGV-0018405_20	1410650.JHWL01000003_gene2814	260.0	0	N/A	N/A
Pfam	UHGV-0018405_20	PF18760	N/A	N/A	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
eggNOG-mapper	UHGV-0018405_21	1410650.JHWL01000003_gene2815	72.8	0.0000000000241	N/A	N/A
UniRef90	UHGV-0018405_22	UniRef90_A0A8D9UGT1	109.0	2.67e-28	Sigma C capsid protein	N/A
PHROG	UHGV-0018405_23	phrog_511	226.7	0	internal virion protein	head and packaging
UniRef90	UHGV-0018405_23	UniRef90_A0A8D9UH72	812.0	0	Stabilization protein (Fragment)	N/A
eggNOG-mapper	UHGV-0018405_23	1226322.HMPREF1545_00785	312.0	0	N/A	N/A
structural_annotation	UHGV-0018405_23	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0018405_24	phrog_12105	82.8	1.3e-24	N/A	unknown function
eggNOG-mapper	UHGV-0018405_24	1519439.JPJG01000060_gene1891	64.7	0.00000000000894	N/A	N/A
KOfam	UHGV-0018405_25	K01448	49.0	0.000000000000086	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0018405_25	phrog_1493	72.9	5.4e-21	endolysin	lysis
UniRef90	UHGV-0018405_25	UniRef90_A0A810PUG7	211.0	0	SPOR domain-containing protein	N/A
eggNOG-mapper	UHGV-0018405_25	994573.T472_0212035	84.0	1.75e-16	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0018405_25	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-0018405_25	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0018405_25	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0018405_25	PF01520,PF01471,MF_00562,TIGR02883,TIGR03979,COG0860,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-0018405_26	phrog_881	84.4	6.5e-25	holin	lysis
UniRef90	UHGV-0018405_26	UniRef90_UPI00189D3A4F	83.6	1.49e-19	phage holin	N/A
eggNOG-mapper	UHGV-0018405_26	742740.HMPREF9474_02251	83.6	2.78e-20	Putative phage holin Dp-1	N/A
Pfam	UHGV-0018405_26	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-0018405_26	PF16938,COG3237	N/A	N/A	N/A	N/A
PHROG	UHGV-0018405_27	phrog_4105	99.1	2.6e-29	N/A	unknown function
UniRef90	UHGV-0018405_27	UniRef90_A0A8D9UHA9	140.0	3.20001e-41	Holin protein	N/A
eggNOG-mapper	UHGV-0018405_27	742733.HMPREF9469_05011	117.0	5.98e-33	N/A	N/A
PHROG	UHGV-0018405_28	phrog_2310	50.9	0.000000000000015	N/A	unknown function
eggNOG-mapper	UHGV-0018405_28	931276.Cspa_c27110	51.2	0.0000000344	N/A	N/A
Pfam	UHGV-0018405_30	PF21722	N/A	N/A	Glycine-rich domain	Gly_rich_2
structural_annotation	UHGV-0018405_30	PF21722	N/A	N/A	N/A	N/A
PHROG	UHGV-0018405_31	phrog_3904	67.6	1.3e-34	tail fiber protein	tail
UniRef90	UHGV-0018405_31	UniRef90_A0A8D9PDI4	271.0	0	Collagen I alpha 1	N/A
eggNOG-mapper	UHGV-0018405_31	1203606.HMPREF1526_02029	69.7	0.000000000522	Collagen triple helix repeat (20 copies)	N/A
COG	UHGV-0018405_31	COG1409	N/A	N/A	3',5'-cyclic AMP phosphodiesterase CpdA	N/A
structural_annotation	UHGV-0018405_31	PF10651,NF033814	N/A	N/A	N/A	N/A
PHROG	UHGV-0018405_32	phrog_15239	88.3	3.7e-26	N/A	unknown function
eggNOG-mapper	UHGV-0018405_32	1449126.JQKL01000003_gene1694	51.6	0.00000193	N/A	N/A
PHROG	UHGV-0018405_33	phrog_1357	260.7	0	major head protein	head and packaging
UniRef90	UHGV-0018405_33	UniRef90_A0A8D9UH64	704.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-0018405_33	1449126.JQKL01000003_gene1695	420.0	0	N/A	N/A
Pfam	UHGV-0018405_33	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0018405_33	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0018405_33	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0018405_34	phrog_13908	300.2	0	N/A	unknown function
UniRef90	UHGV-0018405_34	UniRef90_A0A174CZ20	114.0	3.88e-25	Predicted ribosomal protein	N/A
eggNOG-mapper	UHGV-0018405_34	1410650.JHWL01000003_gene2831	120.0	3.76e-29	N/A	N/A
UniRef90	UHGV-0018405_35	UniRef90_A0A8D9PDR6	165.0	0	YsxB-like protein	N/A
structural_annotation	UHGV-0018405_35	NF011128,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0018405_36	phrog_156	331.7	0	portal protein	head and packaging
UniRef90	UHGV-0018405_36	UniRef90_A0A8D9UH10	1125.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-0018405_36	748224.HMPREF9436_01396	533.0	0	N/A	N/A
structural_annotation	UHGV-0018405_36	PF16510,MF_04120,TIGR01538,COG4383	N/A	N/A	N/A	N/A
KOfam	UHGV-0018405_37	K06909	121.1	1.1e-35	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0018405_37	phrog_979	197.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-0018405_37	UniRef90_A0A8D9PDR5	951.0	0	Large subunit terminase	N/A
eggNOG-mapper	UHGV-0018405_37	657322.FPR_02290	611.0	0	Terminase-like family	N/A
Pfam	UHGV-0018405_37	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0018405_37	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0018405_37	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0018405_38	phrog_606	78.0	1.2e-22	terminase small subunit	head and packaging
UniRef90	UHGV-0018405_38	UniRef90_UPI00195648BB	189.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0018405_38	397290.C810_05185	144.0	4.21931e-42	DNA-packaging protein gp3	N/A
Pfam	UHGV-0018405_38	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0018405_38	PF16677	N/A	N/A	N/A	N/A
UniRef90	UHGV-0018405_44	UniRef90_A0A8D9PDK1	73.6	0.0000000000000165	Anti-repressor	N/A
PHROG	UHGV-0018405_45	phrog_111	143.4	1.10002e-42	DNA methyltransferase	other
UniRef90	UHGV-0018405_45	UniRef90_A0A1L5KS67	194.0	0	DNA N-6-adenine-methyltransferase (Dam)	N/A
eggNOG-mapper	UHGV-0018405_45	479437.Elen_2611	179.0	0	DNA N-6-adenine-methyltransferase (Dam)	N/A
PADLOC	UHGV-0018405_45	oMTase_00015	165.1	0	orphan methyltransferase	RM
Pfam	UHGV-0018405_45	PF05869	N/A	N/A	DNA N-6-adenine-methyltransferase (Dam)	Dam
COG	UHGV-0018405_45	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0018405_45	PF05869,TIGR01712,COG0338	N/A	N/A	N/A	N/A
KOfam	UHGV-0018405_46	K00558	42.8	6.2e-18	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0018405_46	phrog_16427	79.9	1.8e-23	DNA methyltransferase	other
UniRef90	UHGV-0018405_46	UniRef90_A0A6L5TDR3	253.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0018405_46	657322.FPR_26610	240.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
Pfam	UHGV-0018405_46	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0018405_46	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
eggNOG-mapper	UHGV-0018405_47	1232443.BAIA02000103_gene2903	75.5	0.00000000000000487	N/A	N/A
PHROG	UHGV-0018405_48	phrog_190	111.8	5e-33	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0018405_48	UniRef90_A0A8D9PDD6	260.0	0	Endonuclease	N/A
eggNOG-mapper	UHGV-0018405_48	1226322.HMPREF1545_00295	120.0	1.59e-32	N/A	N/A
Pfam	UHGV-0018405_48	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0018405_48	PF06356	N/A	N/A	N/A	N/A
UniRef90	UHGV-0018405_50	UniRef90_A0A8D9PDS1	51.6	0.00000768	Replisome organizer	N/A
structural_annotation	UHGV-0018405_50	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-0018405_51	phrog_15768	45.1	0.000000000002	N/A	unknown function
UniRef90	UHGV-0018405_51	UniRef90_UPI0019563B2C	78.2	6.88e-17	N/A	N/A
eggNOG-mapper	UHGV-0018405_51	1121344.JHZO01000003_gene982	58.2	0.00000000435	N/A	N/A
Pfam	UHGV-0018405_51	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-0018405_51	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-0018405_54	K03111	147.8	9.94922e-44	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0018405_54	phrog_44	149.4	1.82169e-44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0018405_54	UniRef90_A0A810QFR8	195.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0018405_54	693746.OBV_12860	195.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0018405_54	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0018405_54	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0018405_54	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0018405_54	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0018405_54	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0018405_55	PF12844,MF_00535,NF041951,COG5499	N/A	N/A	N/A	N/A
PHROG	UHGV-0018405_56	phrog_7566	98.9	2.6e-29	N/A	unknown function
UniRef90	UHGV-0018405_56	UniRef90_A0A8D9UHC0	179.0	0	Recombination enhancement function protein nuclease	N/A
eggNOG-mapper	UHGV-0018405_56	693746.OBV_24070	119.0	1.28e-33	N/A	N/A
PHROG	UHGV-0018405_57	phrog_72	42.2	0.0000000000051	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0018405_57	UniRef90_A0A8D9PDS2	309.0	0	NinB protein	N/A
eggNOG-mapper	UHGV-0018405_57	445972.ANACOL_01825	124.0	1.47e-33	N/A	N/A
structural_annotation	UHGV-0018405_57	PF05772	N/A	N/A	N/A	N/A
UniRef90	UHGV-0018405_58	UniRef90_B0PAM4	159.0	0	YqaJ domain-containing protein	N/A
structural_annotation	UHGV-0018405_58	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
UniRef90	UHGV-0018405_59	UniRef90_A0A845QLQ8	191.0	0	N/A	N/A
eggNOG-mapper	UHGV-0018405_59	33035.JPJF01000135_gene5082	116.0	1.44e-29	N/A	N/A
Pfam	UHGV-0018405_59	PF06378	N/A	N/A	N/A	DUF1071
structural_annotation	UHGV-0018405_59	PF06378,TIGR00607,COG5055	N/A	N/A	N/A	N/A
UniRef90	UHGV-0018405_62	UniRef90_A0A8D9UH91	271.0	0	HTH cro/C1-type domain-containing protein	N/A
structural_annotation	UHGV-0018405_62	PF01381,PF21715,NF041951,TIGR04176,COG1476,COG1654	N/A	N/A	N/A	N/A
PHROG	UHGV-0018405_63	phrog_27197	64.0	2.5e-18	N/A	unknown function
COG	UHGV-0018405_63	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0018405	Yes	42,319	56	99	1