vOTU vOTU-083309

vOTU: vOTU-083309

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-083309
Number of genomes	3
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B
Taxonomy (UHGV)	vFAM-00010 → vSUBFAM-02441 → vGENUS-03846 → vSUBGEN-16975 → vOTU-083309
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0223519
Biosample ID	N/A
Genome length (bp)	36,424 bps
CheckV completeness	93.41% (High-quality)
CDS count	50
CDS density	93.01%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	685	Host agreement	84.67
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	288	Host agreement	94.1

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 93.41)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0223519_1	phrog_18591	126.0	2e-37	N/A	unknown function
eggNOG-mapper	UHGV-0223519_1	1230343.CANP01000040_gene3044	181.0	0	N/A	N/A
PHROG	UHGV-0223519_2	phrog_443	65.5	1.3e-18	holin	lysis
UniRef90	UHGV-0223519_2	UniRef90_R6R2Q3	90.5	1.5e-22	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0223519_2	1298920.KI911353_gene2669	83.2	2.04e-20	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0223519_2	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0223519_2	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-0223519_3	phrog_1863	73.6	2.1e-22	N/A	unknown function
UniRef90	UHGV-0223519_3	UniRef90_UPI001F223E8B	91.3	1.62e-22	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-0223519_3	1203606.HMPREF1526_02027	77.4	8.02e-18	N/A	N/A
PHROG	UHGV-0223519_4	phrog_16164	72.5	3.3e-21	N/A	unknown function
structural_annotation	UHGV-0223519_4	PF16255,NF041897,COG2755	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0223519_5	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0223519_6	phrog_1194	62.9	4.8e-18	N/A	unknown function
eggNOG-mapper	UHGV-0223519_6	397290.C810_05238	93.2	2.05e-22	N/A	N/A
Pfam	UHGV-0223519_6	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0223519_6	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0223519_7	phrog_1535	467.8	0	tail length tape measure protein	tail
UniRef90	UHGV-0223519_7	UniRef90_A0A2N0ULX3	1429.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0223519_7	33035.JPJF01000093_gene2243	353.0	0	phage tail tape measure protein	N/A
COG	UHGV-0223519_7	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0223519_7	PF20155,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0223519_9	phrog_706	140.2	1.19993e-41	N/A	unknown function
UniRef90	UHGV-0223519_9	UniRef90_A0A2N0ULW2	365.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0223519_9	1160721.RBI_II00530	210.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0223519_9	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0223519_9	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0223519_10	phrog_11299	136.2	1.7e-40	N/A	unknown function
eggNOG-mapper	UHGV-0223519_10	1298920.KI911353_gene2067	75.1	0.00000000000000346	N/A	N/A
structural_annotation	UHGV-0223519_10	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0223519_11	phrog_3099	148.3	3.50325e-44	N/A	unknown function
eggNOG-mapper	UHGV-0223519_11	1160721.RBI_II00532	232.0	0	N/A	N/A
structural_annotation	UHGV-0223519_11	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0223519_12	phrog_3266	104.6	6.9e-31	tail completion	connector
eggNOG-mapper	UHGV-0223519_12	1449050.JNLE01000003_gene3885	143.0	7.56981e-42	N/A	N/A
structural_annotation	UHGV-0223519_12	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0223519_13	phrog_556	118.8	1.6e-35	minor head protein	head and packaging
UniRef90	UHGV-0223519_13	UniRef90_UPI00189BC4F9	184.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0223519_13	1449050.JNLE01000003_gene3886	177.0	0	N/A	N/A
Pfam	UHGV-0223519_13	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0223519_13	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0223519_14	phrog_3366	74.5	1.3e-21	N/A	unknown function
eggNOG-mapper	UHGV-0223519_14	1449050.JNLE01000003_gene3887	86.3	7.14e-20	N/A	N/A
Pfam	UHGV-0223519_14	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0223519_14	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-0223519_15	phrog_541	80.4	2e-23	head-tail adaptor	connector
UniRef90	UHGV-0223519_15	UniRef90_A0A371AQT0	109.0	1.94e-28	N/A	N/A
eggNOG-mapper	UHGV-0223519_15	1449050.JNLE01000003_gene3888	82.0	1.7e-18	N/A	N/A
PHROG	UHGV-0223519_16	phrog_544	290.3	0	major head protein	head and packaging
UniRef90	UHGV-0223519_16	UniRef90_UPI000F53CC4F	476.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0223519_16	936580.HMPREF1516_0718	328.0	0	N/A	N/A
NCBIFam	UHGV-0223519_16	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0223519_16	PF05065,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0223519_17	phrog_194	92.8	4.8e-27	head scaffolding protein	head and packaging
UniRef90	UHGV-0223519_17	UniRef90_A0A2N0ULW9	283.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0223519_17	742765.HMPREF9457_02126	164.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0223519_17	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0223519_17	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0223519_18	phrog_2616	45.0	0.0000000000024	N/A	unknown function
structural_annotation	UHGV-0223519_18	PF01281	N/A	N/A	N/A	N/A
PHROG	UHGV-0223519_19	phrog_478	129.3	1.5e-38	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0223519_19	UniRef90_A0A285PT53	146.0	1.03976e-42	Prokaryotic membrane lipoprotein lipid attachment site profile	N/A
eggNOG-mapper	UHGV-0223519_19	478749.BRYFOR_08526	148.0	2.24208e-44	N/A	N/A
PHROG	UHGV-0223519_21	phrog_581	318.4	0	minor head protein	head and packaging
UniRef90	UHGV-0223519_21	UniRef90_A0A2N0ULU5	745.0	0	Putative ADP-ribosyltransferase Certhrax	N/A
eggNOG-mapper	UHGV-0223519_21	658655.HMPREF0988_02563	372.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0223519_21	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0223519_21	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0223519_21	PF06152,TIGR01641	N/A	N/A	N/A	N/A
PHROG	UHGV-0223519_22	phrog_533	327.2	0	portal protein	head and packaging
UniRef90	UHGV-0223519_22	UniRef90_A0A2N0ULU9	866.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0223519_22	1304866.K413DRAFT_3035	473.0	0	N/A	N/A
structural_annotation	UHGV-0223519_22	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0223519_23	K06909	397.5	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0223519_23	phrog_3717	145.7	7.00649e-45	terminase large subunit	head and packaging
UniRef90	UHGV-0223519_23	UniRef90_A0A2N0ULW5	1029.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-0223519_23	411461.DORFOR_01162	613.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0223519_23	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0223519_23	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0223519_23	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0223519_23	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0223519_23	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0223519_26	phrog_8684	99.7	1.4e-30	N/A	unknown function
UniRef90	UHGV-0223519_26	UniRef90_A0A374DV44	180.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0223519_26	411473.RUMCAL_00280	77.4	2.01e-16	YopX protein	N/A
Pfam	UHGV-0223519_26	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0223519_26	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0223519_26	PF09643,TIGR01671	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0223519_28	PF19824,MF_01506	N/A	N/A	N/A	N/A
KOfam	UHGV-0223519_30	K06919	102.6	4e-30	K06919; putative DNA primase/helicase	N/A
PHROG	UHGV-0223519_30	phrog_1829	828.5	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0223519_30	UniRef90_A0A2N0ULU7	1574.0	0	SF3 helicase domain-containing protein	N/A
eggNOG-mapper	UHGV-0223519_30	1410670.JHXF01000015_gene2274	873.0	0	Phage plasmid primase, P4 family	N/A
Pfam	UHGV-0223519_30	PF08706	N/A	N/A	D5 N terminal like	D5_N
Pfam	UHGV-0223519_30	PF19263	N/A	N/A	N/A	DUF5906
Pfam	UHGV-0223519_30	PF03288	N/A	N/A	Poxvirus D5 protein-like	Pox_D5
NCBIFam	UHGV-0223519_30	TIGR01613.1	N/A	N/A	phage/plasmid primase, P4 family	N/A
COG	UHGV-0223519_30	COG3378	N/A	N/A	DNA primase, phage- or plasmid-associated	N/A
structural_annotation	UHGV-0223519_30	PF08706,PF05272,PF02257,MF_04000,NF011296,COG3378,COG4983	N/A	N/A	N/A	N/A
PHROG	UHGV-0223519_31	phrog_378	106.4	2.9e-31	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0223519_31	UniRef90_A0A374ND86	399.0	0	N/A	N/A
eggNOG-mapper	UHGV-0223519_31	1410670.JHXF01000015_gene2272	154.0	5.60519e-45	N/A	N/A
Pfam	UHGV-0223519_31	PF05037	N/A	N/A	N/A	DUF669
structural_annotation	UHGV-0223519_31	PF05037,NF004948	N/A	N/A	N/A	N/A
PHROG	UHGV-0223519_32	phrog_5702	75.1	3.3e-22	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0223519_32	UniRef90_A0A374N329	207.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0223519_32	1410670.JHXF01000015_gene2271	150.0	0	VRR_NUC	N/A
Pfam	UHGV-0223519_32	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-0223519_32	PF01870,MF_00130,NF002581,COG1591	N/A	N/A	N/A	N/A
KOfam	UHGV-0223519_33	K19789	326.7	0	radD; DNA repair protein RadD	N/A
PHROG	UHGV-0223519_33	phrog_16	281.4	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0223519_33	UniRef90_A0A374N1T8	914.0	0	Helicase	N/A
eggNOG-mapper	UHGV-0223519_33	1410670.JHXF01000015_gene2270	561.0	0	helicase	N/A
PADLOC	UHGV-0223519_33	mREase_IV_00005	112.9	1.2e-34	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0223519_33	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0223519_33	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0223519_33	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0223519_33	PF04851,PF00271,MF_01489,TIGR04095,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-0223519_34	phrog_1366	226.0	0	N/A	unknown function
UniRef90	UHGV-0223519_34	UniRef90_R6S946	435.0	0	AAA domain-containing protein	N/A
eggNOG-mapper	UHGV-0223519_34	1410670.JHXF01000015_gene2269	400.0	0	AAA domain	N/A
Pfam	UHGV-0223519_34	PF13479	N/A	N/A	AAA domain	AAA_24
COG	UHGV-0223519_34	COG0468	N/A	N/A	RecA/RadA recombinase	N/A
structural_annotation	UHGV-0223519_34	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-0223519_35	phrog_253	101.2	3.9e-31	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0223519_35	UniRef90_UPI0019171ADA	180.0	0	siphovirus Gp157 family protein	N/A
eggNOG-mapper	UHGV-0223519_35	1027396.LMOSA_21290	58.2	0.0000000429	Siphovirus Gp157	N/A
Pfam	UHGV-0223519_35	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0223519_35	PF05565	N/A	N/A	N/A	N/A
PHROG	UHGV-0223519_36	phrog_15609	100.1	2.4e-29	N/A	unknown function
UniRef90	UHGV-0223519_36	UniRef90_A0A373SLQ6	153.0	2.02e-40	N/A	N/A
eggNOG-mapper	UHGV-0223519_36	641112.ACOK01000073_gene2872	114.0	4.17e-27	N/A	N/A
structural_annotation	UHGV-0223519_36	PF11300,NF033725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0223519_38	1235835.C814_03153	47.0	0.00000706	N/A	N/A
structural_annotation	UHGV-0223519_38	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-0223519_40	phrog_2232	219.8	0	N/A	unknown function
UniRef90	UHGV-0223519_40	UniRef90_UPI00164B82D7	422.0	0	N/A	N/A
eggNOG-mapper	UHGV-0223519_40	748224.HMPREF9436_01448	166.0	0	N/A	N/A
Pfam	UHGV-0223519_40	PF14337	N/A	N/A	Abortive infection alpha	Abi_alpha
structural_annotation	UHGV-0223519_40	PF14337,TIGR03899	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0223519_42	PF11614,TIGR02588,COG2847	N/A	N/A	N/A	N/A
KOfam	UHGV-0223519_45	K18830	58.4	1.6e-16	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0223519_45	phrog_8	43.5	0.0000000000019	transcriptional regulator	transcription regulation
UniRef90	UHGV-0223519_45	UniRef90_A0A1G5CKS8	190.0	0	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
eggNOG-mapper	UHGV-0223519_45	537013.CLOSTMETH_02500	97.1	1.95e-24	N/A	N/A
Pfam	UHGV-0223519_45	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0223519_45	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0223519_45	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0223519_46	phrog_16442	141.3	5.4006e-42	N/A	unknown function
UniRef90	UHGV-0223519_46	UniRef90_A0A373KW38	327.0	0	Nucleotide-binding protein	N/A
eggNOG-mapper	UHGV-0223519_46	397291.C804_06293	194.0	0	Predicted nucleotide-binding protein containing TIR-like domain	N/A
PADLOC	UHGV-0223519_46	Effector_00069	47.9	0.00000000000019	TIR	CBASS
Pfam	UHGV-0223519_46	PF10137	N/A	N/A	CAP12/Pycsar effector protein, TIR domain	CAP12-PCTIR_TIR
COG	UHGV-0223519_46	COG4271	N/A	N/A	Predicted nucleotide-binding protein containing TIR -like domain	N/A
structural_annotation	UHGV-0223519_46	PF10137,COG4271	N/A	N/A	N/A	N/A
PHROG	UHGV-0223519_47	phrog_10226	176.2	0	N/A	unknown function
eggNOG-mapper	UHGV-0223519_47	431943.CKL_3226	179.0	0	N/A	N/A
KOfam	UHGV-0223519_49	K22299	57.4	3.8e-16	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0223519_49	phrog_8	62.0	1.4e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0223519_49	UniRef90_A0A374NFM5	128.0	9e-38	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0223519_49	1567011.A0A0A7RUJ5_9VIRU	68.9	0.0000000000000138	protein disulfide oxidoreductase activity	N/A
PADLOC	UHGV-0223519_49	retron_type_VI_hth_cluster2_1	45.7	0.0000000000019	N/A	Retron
Pfam	UHGV-0223519_49	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0223519_49	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0223519_50	K14059	153.7	2.8026e-45	int; integrase	N/A
PHROG	UHGV-0223519_50	phrog_1	167.7	0	integrase	integration and excision
UniRef90	UHGV-0223519_50	UniRef90_A0A412L7T7	694.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0223519_50	1540257.JQMW01000011_gene2033	323.0	0	Phage integrase family	N/A
Pfam	UHGV-0223519_50	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0223519_50	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0223519_50	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0223519	Yes	36,424	41	93	1
UHGV-1796269	No	19,554	42	45	1
UHGV-1592854	No	16,914	42	41	1