vOTU vOTU-083448

vOTU: vOTU-083448

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-083448
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-01067 → vGENUS-01090 → vSUBGEN-04555 → vOTU-083448
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Roseburia → Roseburia inulinivorans
Host range breadth	Species
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0009821
Biosample ID	N/A
Genome length (bp)	38,841 bps
CheckV completeness	97.06% (High-quality)
CDS count	43
CDS density	93.80%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Roseburia → Roseburia inulinivorans	Total connections	62	Host agreement	83.87
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Roseburia → Roseburia inulinivorans	Total connections	28	Host agreement	89.29

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 97.06)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0009821_2	K14059	118.3	1.1e-34	int; integrase	N/A
PHROG	UHGV-0009821_2	phrog_1	135.6	4.9e-40	integrase	integration and excision
UniRef90	UHGV-0009821_2	UniRef90_UPI00093149AF	308.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0009821_2	585394.RHOM_14030	273.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0009821_2	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0009821_2	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0009821_2	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0009821_4	1163671.JAGI01000002_gene1685	58.5	0.000000257	Flagellar rod assembly protein muramidase FlgJ	N/A
NCBIFam	UHGV-0009821_4	NF033223.2	N/A	N/A	YHYH domain-containing protein	N/A
COG	UHGV-0009821_4	COG1705	N/A	N/A	Flagellum-specific peptidoglycan hydrolase FlgJ	N/A
KOfam	UHGV-0009821_5	K07729	50.3	0.000000000000048	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0009821_5	phrog_3	43.0	0.000000000015	transcriptional repressor	transcription regulation
UniRef90	UHGV-0009821_5	UniRef90_A0A1Q6KGJ8	108.0	5.26e-29	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0009821_5	411470.RUMGNA_00189	91.7	3.12e-23	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0009821_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
KOfam	UHGV-0009821_7	K18830	67.2	1.1e-19	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0009821_7	phrog_2967	50.1	0.000000000000024	transcriptional regulator	transcription regulation
UniRef90	UHGV-0009821_7	UniRef90_A0A1Q6KH79	192.0	0	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0009821_7	1235793.C809_03587	157.0	0	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0009821_7	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0009821_7	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0009821_7	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0009821_8	411468.CLOSCI_00322	46.6	0.00000227	N/A	N/A
PHROG	UHGV-0009821_9	phrog_6058	65.0	7.5e-19	N/A	unknown function
UniRef90	UHGV-0009821_9	UniRef90_A0A0V8QBN7	68.9	0.000000000000263	Histone-lysine N-methyltransferase	N/A
eggNOG-mapper	UHGV-0009821_9	428125.CLOLEP_01347	69.3	0.000000000000026	N/A	N/A
structural_annotation	UHGV-0009821_9	PF12728,NF040990	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0009821_10	PF07408,MF_01560,TIGR00029,COG0268	N/A	N/A	N/A	N/A
PHROG	UHGV-0009821_13	phrog_3584	167.3	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0009821_13	411459.RUMOBE_00953	366.0	0	N/A	N/A
structural_annotation	UHGV-0009821_13	PF01446	N/A	N/A	N/A	N/A
KOfam	UHGV-0009821_14	K03469	57.2	3.5e-16	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-0009821_14	phrog_531	52.7	0.0000000000000078	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0009821_14	UniRef90_A0A1Q6KIM6	292.0	0	RNase H type-1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0009821_14	1120963.KB894491_gene1009	57.0	0.0000000382	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	N/A
Pfam	UHGV-0009821_14	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-0009821_14	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0009821_14	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0009821_15	1280698.AUJS01000007_gene1016	150.0	3.92364e-44	N/A	N/A
PHROG	UHGV-0009821_16	phrog_4433	84.7	3.6e-28	N/A	unknown function
eggNOG-mapper	UHGV-0009821_16	742738.HMPREF9460_01792	123.0	3.99e-33	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0009821_16	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0009821_16	PF12120,NF000318	N/A	N/A	N/A	N/A
PHROG	UHGV-0009821_17	phrog_8470	218.4	0	N/A	unknown function
UniRef90	UHGV-0009821_17	UniRef90_UPI000E4BB21C	645.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0009821_17	742733.HMPREF9469_00219	306.0	0	PcfJ-like protein	N/A
Pfam	UHGV-0009821_17	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0009821_17	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0009821_18	phrog_15077	110.7	2.5e-32	N/A	unknown function
UniRef90	UHGV-0009821_18	UniRef90_A0A174WLY0	247.0	0	N/A	N/A
eggNOG-mapper	UHGV-0009821_18	483218.BACPEC_01165	226.0	0	N/A	N/A
structural_annotation	UHGV-0009821_18	PF11300,NF033725	N/A	N/A	N/A	N/A
UniRef90	UHGV-0009821_19	UniRef90_UPI00164A90AD	120.0	8.73e-33	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0009821_19	1235800.C819_02254	103.0	1.04e-26	HNH nucleases	N/A
UniRef90	UHGV-0009821_21	UniRef90_A0A412FGY3	119.0	1.08e-32	YopX domain-containing protein	N/A
Pfam	UHGV-0009821_21	PF09643	N/A	N/A	YopX protein	YopX
structural_annotation	UHGV-0009821_21	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-0009821_22	phrog_625	57.1	2.3e-16	N/A	unknown function
UniRef90	UHGV-0009821_22	UniRef90_UPI0015F9766F	185.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0009821_22	411463.EUBVEN_00477	119.0	1.06e-33	N/A	N/A
UniRef90	UHGV-0009821_24	UniRef90_A0A6L9HMX6	266.0	0	N/A	N/A
eggNOG-mapper	UHGV-0009821_24	585394.RHOM_04340	280.0	0	N/A	N/A
Pfam	UHGV-0009821_24	PF14199	N/A	N/A	N/A	DUF4317
structural_annotation	UHGV-0009821_24	PF14199,MF_00730,NF001557,COG3081	N/A	N/A	N/A	N/A
PHROG	UHGV-0009821_25	phrog_24386	344.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0009821_25	742740.HMPREF9474_02291	293.0	0	phosphatase activity	N/A
COG	UHGV-0009821_25	COG0561	N/A	N/A	Hydroxymethylpyrimidine pyrophosphatase and other HAD family phosphatases	N/A
structural_annotation	UHGV-0009821_25	TIGR01689	N/A	N/A	N/A	N/A
KOfam	UHGV-0009821_26	K07474	101.8	1.2e-29	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0009821_26	phrog_2606	172.8	0	terminase small subunit	head and packaging
UniRef90	UHGV-0009821_26	UniRef90_A0A4P9C628	165.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0009821_26	411461.DORFOR_01162	140.0	5.84e-35	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0009821_26	PF06056	N/A	N/A	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
Pfam	UHGV-0009821_26	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0009821_26	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0009821_26	PF03592,PF06056,NF040601,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-0009821_27	K06909	93.4	2.9e-27	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0009821_27	phrog_979	207.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-0009821_27	UniRef90_A0A2V2D4K5	690.0	0	Terminase-like family protein	N/A
eggNOG-mapper	UHGV-0009821_27	411483.FAEPRAA2165_01044	667.0	0	Terminase-like family	N/A
Pfam	UHGV-0009821_27	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0009821_27	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0009821_27	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0009821_28	phrog_156	331.9	0	portal protein	head and packaging
UniRef90	UHGV-0009821_28	UniRef90_A0A8D9UH10	507.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-0009821_28	748224.HMPREF9436_01396	518.0	0	N/A	N/A
structural_annotation	UHGV-0009821_28	PF16510,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
KOfam	UHGV-0009821_29	K07584	72.8	5.6e-21	N/A	N/A
PHROG	UHGV-0009821_29	phrog_4478	80.0	1.8e-23	peptidase	other
UniRef90	UHGV-0009821_29	UniRef90_A0A7X8QR99	63.9	0.000000000105	Ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-0009821_29	1347392.CCEZ01000026_gene2980	56.6	0.0000000112	Cysteine protease Prp	N/A
Pfam	UHGV-0009821_29	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0009821_29	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0009821_29	NF011130,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0009821_30	phrog_13908	270.3	0	N/A	unknown function
eggNOG-mapper	UHGV-0009821_30	1410650.JHWL01000003_gene2831	105.0	1.98e-23	N/A	N/A
PHROG	UHGV-0009821_31	phrog_1357	254.0	0	major head protein	head and packaging
UniRef90	UHGV-0009821_31	UniRef90_A0A3R6PQZ4	408.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0009821_31	748224.HMPREF9436_01399	353.0	0	N/A	N/A
NCBIFam	UHGV-0009821_31	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0009821_31	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0009821_32	phrog_15239	59.0	7.5e-17	N/A	unknown function
PHROG	UHGV-0009821_33	phrog_12105	123.0	1.4e-36	N/A	unknown function
eggNOG-mapper	UHGV-0009821_33	1226322.HMPREF1545_03850	73.9	0.00000000000000349	N/A	N/A
PHROG	UHGV-0009821_34	phrog_511	267.1	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0009821_34	1410650.JHWL01000003_gene2827	313.0	0	N/A	N/A
structural_annotation	UHGV-0009821_34	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0009821_36	phrog_21397	48.5	0.000000000000092	N/A	unknown function
eggNOG-mapper	UHGV-0009821_36	1410650.JHWL01000003_gene2815	127.0	2.64e-30	N/A	N/A
PHROG	UHGV-0009821_37	phrog_22978	573.0	0	N/A	unknown function
eggNOG-mapper	UHGV-0009821_37	1410650.JHWL01000003_gene2814	607.0	0	N/A	N/A
Pfam	UHGV-0009821_37	PF18812	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3	PBECR3
PHROG	UHGV-0009821_38	phrog_1419	71.4	6.5e-21	tail protein	tail
UniRef90	UHGV-0009821_38	UniRef90_A0A1I0BH39	218.0	0	BppU_N domain-containing protein	N/A
eggNOG-mapper	UHGV-0009821_38	397288.C806_02170	75.9	0.000000000000637	N/A	N/A
Pfam	UHGV-0009821_38	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
KOfam	UHGV-0009821_40	K03733	69.2	7.3e-20	xerC; integrase/recombinase XerC	N/A
PHROG	UHGV-0009821_40	phrog_1	76.2	5.8e-22	integrase	integration and excision
UniRef90	UHGV-0009821_40	UniRef90_F9Q506	78.2	9.87e-16	Phage integrase, N-terminal SAM domain protein	N/A
eggNOG-mapper	UHGV-0009821_40	397287.C807_01352	88.6	2.61e-19	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0009821_40	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0009821_40	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
PHROG	UHGV-0009821_41	phrog_1863	70.5	1.3e-20	N/A	unknown function
eggNOG-mapper	UHGV-0009821_41	665956.HMPREF1032_03922	105.0	7.4e-29	N/A	N/A
PHROG	UHGV-0009821_42	phrog_1129	91.2	5.8e-27	holin	lysis
UniRef90	UHGV-0009821_42	UniRef90_A0A412KF76	167.0	0	Holin	N/A
eggNOG-mapper	UHGV-0009821_42	1256908.HMPREF0373_00463	162.0	0	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0009821_42	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0009821_42	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0009821_43	phrog_1048	85.3	2.5e-25	N/A	unknown function
UniRef90	UHGV-0009821_43	UniRef90_A0A352P8A0	254.0	0	N/A	N/A
eggNOG-mapper	UHGV-0009821_43	457412.RSAG_01107	186.0	0	N/A	N/A
Pfam	UHGV-0009821_43	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-0009821_43	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-0009821_43	PF11195	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0009821	Yes	38,841	40	97	1