vOTU vOTU-083563

vOTU: vOTU-083563

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-083563
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00767 → vGENUS-01576 → vSUBGEN-38989 → vOTU-083563
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae
Host range breadth	Family
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0036139
Biosample ID	N/A
Genome length (bp)	39,587 bps
CheckV completeness	99.90% (High-quality)
CDS count	58
CDS density	90.95%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae	Total connections	50	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Dorea → Dorea formicigenerans	Total connections	15	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0036139_2	K14059	176.2	0	int; integrase	N/A
PHROG	UHGV-0036139_2	phrog_1	159.0	0	integrase	integration and excision
UniRef90	UHGV-0036139_2	UniRef90_B0G4D9	709.0	0	Site-specific recombinase, phage integrase family	N/A
eggNOG-mapper	UHGV-0036139_2	411461.DORFOR_01126	709.0	0	Phage integrase family	N/A
Pfam	UHGV-0036139_2	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0036139_2	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0036139_2	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0036139_2	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0036139_3	PF12869,PF01336,NF012035,COG4085	N/A	N/A	N/A	N/A
KOfam	UHGV-0036139_5	K22300	52.5	0.000000000000011	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0036139_5	phrog_8	41.5	0.000000000018	transcriptional regulator	transcription regulation
UniRef90	UHGV-0036139_5	UniRef90_A0A413QMZ1	269.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0036139_5	471875.RUMLAC_01755	104.0	5.06e-27	sequence-specific DNA binding	N/A
Pfam	UHGV-0036139_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0036139_5	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0036139_5	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0036139_11	phrog_36464	58.8	1.2e-16	N/A	unknown function
eggNOG-mapper	UHGV-0036139_11	411461.DORFOR_01136	157.0	0	N/A	N/A
structural_annotation	UHGV-0036139_11	PF09035	N/A	N/A	N/A	N/A
PHROG	UHGV-0036139_13	phrog_3584	124.1	1e-36	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0036139_13	411461.DORFOR_01138	499.0	0	N/A	N/A
structural_annotation	UHGV-0036139_13	PF01446	N/A	N/A	N/A	N/A
KOfam	UHGV-0036139_15	K03469	41.1	0.000000000031	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-0036139_15	phrog_531	47.8	0.00000000000027	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0036139_15	UniRef90_A0A1M6MV17	147.0	9.44475e-43	Ribonuclease HI	N/A
eggNOG-mapper	UHGV-0036139_15	411461.DORFOR_01140	292.0	0	RNA-DNA hybrid ribonuclease activity	N/A
COG	UHGV-0036139_15	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0036139_15	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
KOfam	UHGV-0036139_16	K00571	93.5	2.8e-27	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0036139_16	phrog_23224	215.0	0	DNA methyltransferase	other
UniRef90	UHGV-0036139_16	UniRef90_A0A396PTY1	406.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0036139_16	1214217.ALNF01000014_gene1390	326.0	0	N-4 methylation of cytosine	N/A
PADLOC	UHGV-0036139_16	MTase_II_00172	51.2	9e-28	Type II methyltransferase	RM
Pfam	UHGV-0036139_16	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0036139_16	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0036139_16	PF01555,NF010253,COG0863	N/A	N/A	N/A	N/A
KOfam	UHGV-0036139_17	K03497	135.6	5.4e-40	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0036139_17	phrog_6218	192.4	0	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0036139_17	UniRef90_B0G4F7	853.0	0	ParB-like protein	N/A
eggNOG-mapper	UHGV-0036139_17	411461.DORFOR_01144	853.0	0	Belongs to the ParB family	N/A
Pfam	UHGV-0036139_17	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
NCBIFam	UHGV-0036139_17	TIGR00180.1	N/A	N/A	ParB/RepB/Spo0J family partition protein	N/A
COG	UHGV-0036139_17	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0036139_17	PF02195,PF18579,MF_02015,TIGR00180,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-0036139_18	phrog_7566	101.3	4.8e-30	N/A	unknown function
eggNOG-mapper	UHGV-0036139_18	411461.DORFOR_01145	259.0	0	N/A	N/A
structural_annotation	UHGV-0036139_19	PF08169,MF_01549,TIGR00405	N/A	N/A	N/A	N/A
PHROG	UHGV-0036139_20	phrog_31991	113.6	8e-34	N/A	unknown function
PHROG	UHGV-0036139_21	phrog_38110	120.7	3.3e-36	N/A	unknown function
UniRef90	UHGV-0036139_22	UniRef90_A0A8B3AJ48	105.0	9.9e-27	AsnC family protein	N/A
structural_annotation	UHGV-0036139_22	PF00196,TIGR04381,COG2771	N/A	N/A	N/A	N/A
PHROG	UHGV-0036139_23	phrog_15198	52.4	0.0000000000000089	N/A	unknown function
UniRef90	UHGV-0036139_23	UniRef90_UPI0003FFA2C8	183.0	0	N/A	N/A
eggNOG-mapper	UHGV-0036139_23	1256908.HMPREF0373_00667	101.0	7.23e-26	N/A	N/A
Pfam	UHGV-0036139_23	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0036139_23	PF04448	N/A	N/A	N/A	N/A
PHROG	UHGV-0036139_24	phrog_15198	45.3	0.0000000000013	N/A	unknown function
UniRef90	UHGV-0036139_24	UniRef90_B0G4G8	202.0	0	N/A	N/A
eggNOG-mapper	UHGV-0036139_24	411461.DORFOR_01155	202.0	0	N/A	N/A
Pfam	UHGV-0036139_24	PF04448	N/A	N/A	N/A	DUF551
eggNOG-mapper	UHGV-0036139_25	411461.DORFOR_01156	384.0	0	N/A	N/A
KOfam	UHGV-0036139_26	K07171	78.2	1.4e-22	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	N/A
PHROG	UHGV-0036139_26	phrog_1936	108.4	3.5e-32	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0036139_26	UniRef90_UPI0015711440	184.0	0	type II toxin-antitoxin system PemK/MazF family toxin	N/A
eggNOG-mapper	UHGV-0036139_26	411461.DORFOR_01157	410.0	0	N/A	N/A
Pfam	UHGV-0036139_26	PF02452	N/A	N/A	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
COG	UHGV-0036139_26	COG2337	N/A	N/A	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	N/A
structural_annotation	UHGV-0036139_26	PF02452,NF007386,COG2337	N/A	N/A	N/A	N/A
PHROG	UHGV-0036139_29	phrog_11237	117.8	7.2e-35	N/A	unknown function
eggNOG-mapper	UHGV-0036139_29	411461.DORFOR_01161	280.0	0	N/A	N/A
KOfam	UHGV-0036139_30	K06909	446.8	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0036139_30	phrog_2606	340.6	0	terminase small subunit	head and packaging
UniRef90	UHGV-0036139_30	UniRef90_B0G4H5	1296.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-0036139_30	411461.DORFOR_01162	1296.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0036139_30	PF06056	N/A	N/A	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
Pfam	UHGV-0036139_30	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
Pfam	UHGV-0036139_30	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0036139_30	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0036139_30	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0036139_30	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0036139_30	PF04466,PF17288,PF06056,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0036139_31	phrog_533	337.0	0	portal protein	head and packaging
UniRef90	UHGV-0036139_31	UniRef90_B0G4H6	872.0	0	Putative phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0036139_31	411461.DORFOR_01163	872.0	0	N/A	N/A
structural_annotation	UHGV-0036139_31	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0036139_32	phrog_581	282.9	0	minor head protein	head and packaging
UniRef90	UHGV-0036139_32	UniRef90_A0A173RCB2	855.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0036139_32	411461.DORFOR_01164	1144.0	0	N/A	N/A
Pfam	UHGV-0036139_32	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0036139_32	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0036139_32	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0036139_33	phrog_355	55.1	0.0000000000000013	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0036139_33	UniRef90_A0A415UCX1	159.0	0	N/A	N/A
eggNOG-mapper	UHGV-0036139_33	411461.DORFOR_01165	194.0	0	N/A	N/A
structural_annotation	UHGV-0036139_33	PF14359	N/A	N/A	N/A	N/A
PHROG	UHGV-0036139_34	phrog_194	98.8	6.1e-29	head scaffolding protein	head and packaging
UniRef90	UHGV-0036139_34	UniRef90_A0A173RCF7	236.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0036139_34	411461.DORFOR_01166	391.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0036139_34	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0036139_34	PF06810,MF_02110	N/A	N/A	N/A	N/A
PHROG	UHGV-0036139_35	phrog_283	203.2	0	major head protein	head and packaging
UniRef90	UHGV-0036139_35	UniRef90_A0A173REC9	549.0	0	p22 coat protein-gene protein 5	N/A
eggNOG-mapper	UHGV-0036139_35	411461.DORFOR_01167	665.0	0	P22 coat protein - gene protein 5	N/A
Pfam	UHGV-0036139_35	PF11651	N/A	N/A	P22 coat protein - gene protein 5	P22_CoatProtein
structural_annotation	UHGV-0036139_35	PF11651,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0036139_36	phrog_541	79.3	4.2e-23	head-tail adaptor	connector
eggNOG-mapper	UHGV-0036139_36	411902.CLOBOL_00133	67.4	0.00000000000109	N/A	N/A
PHROG	UHGV-0036139_37	phrog_3366	96.3	2.6e-28	N/A	unknown function
eggNOG-mapper	UHGV-0036139_37	573061.Clocel_3539	64.7	0.0000000000263	N/A	N/A
Pfam	UHGV-0036139_37	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0036139_37	PF20536	N/A	N/A	N/A	N/A
PHROG	UHGV-0036139_38	phrog_556	61.7	1e-17	minor head protein	head and packaging
UniRef90	UHGV-0036139_38	UniRef90_UPI001E609FF9	216.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0036139_38	411461.DORFOR_01170	284.0	0	Minor capsid protein	N/A
Pfam	UHGV-0036139_38	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0036139_38	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0036139_39	phrog_3266	77.6	1.5e-22	tail completion	connector
structural_annotation	UHGV-0036139_39	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0036139_40	phrog_820	100.2	1.7e-29	major tail protein	tail
UniRef90	UHGV-0036139_40	UniRef90_A0A412UWV6	254.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0036139_40	411461.DORFOR_01172	339.0	0	N/A	N/A
structural_annotation	UHGV-0036139_40	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0036139_41	phrog_4450	59.1	9.2e-17	N/A	unknown function
UniRef90	UHGV-0036139_41	UniRef90_A0A7X3SKC0	102.0	6.99e-26	AP endonuclease	N/A
eggNOG-mapper	UHGV-0036139_41	931276.Cspa_c07520	56.2	0.0000000141	N/A	N/A
Pfam	UHGV-0036139_41	PF20378	N/A	N/A	N/A	DUF6673
PHROG	UHGV-0036139_42	phrog_706	157.0	0	N/A	unknown function
UniRef90	UHGV-0036139_42	UniRef90_B0G4I7	385.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0036139_42	411461.DORFOR_01174	385.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0036139_42	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0036139_42	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0036139_43	phrog_19074	449.9	0	N/A	unknown function
UniRef90	UHGV-0036139_43	UniRef90_A0A413QNB2	1847.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0036139_43	411461.DORFOR_01175	1893.0	0	phage tail tape measure protein	N/A
Pfam	UHGV-0036139_43	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0036139_43	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0036139_43	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0036139_43	PF10145,TIGR01760,NF011901	N/A	N/A	N/A	N/A
PHROG	UHGV-0036139_44	phrog_33	47.0	0.00000000000059	distal tail protein Dit	tail
UniRef90	UHGV-0036139_44	UniRef90_UPI0015709E93	291.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0036139_44	411461.DORFOR_01176	539.0	0	N/A	N/A
structural_annotation	UHGV-0036139_44	PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0036139_45	phrog_538	188.8	0	minor tail protein	tail
UniRef90	UHGV-0036139_45	UniRef90_UPI001E2C8064	314.0	0	siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-0036139_45	411461.DORFOR_01177	639.0	0	N/A	N/A
structural_annotation	UHGV-0036139_45	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0036139_46	phrog_13141	142.8	1.80067e-42	N/A	unknown function
UniRef90	UHGV-0036139_46	UniRef90_UPI00156D68EE	256.0	0	H-type lectin domain-containing protein	N/A
eggNOG-mapper	UHGV-0036139_46	411461.DORFOR_01178	310.0	0	N/A	N/A
structural_annotation	UHGV-0036139_46	PF20747	N/A	N/A	N/A	N/A
PHROG	UHGV-0036139_47	phrog_19111	59.2	4.5e-17	N/A	unknown function
eggNOG-mapper	UHGV-0036139_47	1232443.BAIA02000078_gene14	91.3	4.69e-17	nuclear chromosome segregation	N/A
COG	UHGV-0036139_47	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0036139_48	PF16323	N/A	N/A	N/A	N/A
PHROG	UHGV-0036139_49	phrog_12931	104.8	3.4e-31	N/A	unknown function
eggNOG-mapper	UHGV-0036139_49	1280698.AUJS01000007_gene1052	231.0	0	N/A	N/A
eggNOG-mapper	UHGV-0036139_50	1280698.AUJS01000007_gene1053	108.0	1.36e-30	N/A	N/A
eggNOG-mapper	UHGV-0036139_52	476272.RUMHYD_00002	121.0	7.95e-26	N/A	N/A
UniRef90	UHGV-0036139_53	UniRef90_A0A415H5B1	287.0	0	ArsR family transcriptional regulator	N/A
structural_annotation	UHGV-0036139_53	PF01978,MF_01909,NF033788,COG1675	N/A	N/A	N/A	N/A
PHROG	UHGV-0036139_54	phrog_4105	54.4	0.0000000000000022	N/A	unknown function
eggNOG-mapper	UHGV-0036139_54	537013.CLOSTMETH_01753	55.1	0.0000000171	N/A	N/A
PHROG	UHGV-0036139_55	phrog_443	52.8	0.000000000000011	holin	lysis
UniRef90	UHGV-0036139_55	UniRef90_UPI001570A68C	124.0	1.39e-35	holin	N/A
eggNOG-mapper	UHGV-0036139_55	411462.DORLON_00825	87.4	5.92e-22	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0036139_55	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0036139_55	PF16945	N/A	N/A	N/A	N/A
KOfam	UHGV-0036139_56	K01447	75.6	9.2e-22	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0036139_56	phrog_35436	154.6	0	amidase	lysis
UniRef90	UHGV-0036139_56	UniRef90_A0A415H551	462.0	0	MurNAc-LAA domain-containing protein	N/A
eggNOG-mapper	UHGV-0036139_56	1280698.AUJS01000007_gene1059	261.0	0	Ami_2	N/A
Pfam	UHGV-0036139_56	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0036139_56	PF07538	N/A	N/A	Clostridial hydrophobic W	ChW
COG	UHGV-0036139_56	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
structural_annotation	UHGV-0036139_56	PF01520,TIGR02883,COG5492,COG0860	N/A	N/A	N/A	N/A
KOfam	UHGV-0036139_58	K22300	50.4	0.00000000000005	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0036139_58	phrog_8	70.6	3.2e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-0036139_58	UniRef90_B0G4K1	131.0	7.66e-39	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0036139_58	411461.DORFOR_01188	131.0	1.28e-39	transcriptional regulator, XRE family	N/A
Pfam	UHGV-0036139_58	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0036139_58	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0036139_58	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0036139	Yes	39,587	42	100	1
UHGV-0043079	No	23,720	43	62	1