vOTU vOTU-083950

vOTU: vOTU-083950

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-083950
Number of genomes	28
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium → Faecalibacterium sp900539945
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00033 → vGENUS-01157 → vSUBGEN-20059 → vOTU-083950
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium → Faecalibacterium sp900539945
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0391592
Biosample ID	N/A
Genome length (bp)	33,358 bps
CheckV completeness	92.08% (High-quality)
CDS count	48
CDS density	92.67%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_A	Total connections	11	Host agreement	63.64
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium → Faecalibacterium sp900539945	Total connections	63	Host agreement	90.48

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 92.08)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0391592_1	K14059	161.7	0	int; integrase	N/A
PHROG	UHGV-0391592_1	phrog_1	144.7	8.1976e-43	integrase	integration and excision
UniRef90	UHGV-0391592_1	UniRef90_A0A316RZQ6	540.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0391592_1	693746.OBV_25530	278.0	0	Phage integrase family	N/A
Pfam	UHGV-0391592_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0391592_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0391592_1	PF00589,PF14659,MF_01808,NF007246,COG4973	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0391592_2	748224.HMPREF9436_01443	593.0	0	vancomycin resistance protein	N/A
COG	UHGV-0391592_2	COG2720	N/A	N/A	Vancomycin resistance protein YoaR (function unknown), contains peptidoglycan-binding and VanW domains	N/A
KOfam	UHGV-0391592_4	K22300	49.7	0.000000000000077	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0391592_4	phrog_2967	42.6	0.0000000000077	transcriptional regulator	transcription regulation
UniRef90	UHGV-0391592_4	UniRef90_E2ZIF0	192.0	0	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0391592_4	748224.HMPREF9436_01444	192.0	0	N/A	N/A
Pfam	UHGV-0391592_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0391592_4	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0391592_4	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0391592_6	PF13601,MF_01819,TIGR03433,COG1695	N/A	N/A	N/A	N/A
UniRef90	UHGV-0391592_10	UniRef90_A0A396LZ12	118.0	7.48e-32	N/A	N/A
Pfam	UHGV-0391592_10	PF12957	N/A	N/A	N/A	DUF3846
structural_annotation	UHGV-0391592_10	PF12957	N/A	N/A	N/A	N/A
UniRef90	UHGV-0391592_11	UniRef90_A0A2A7BGV7	76.3	1.58e-16	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0391592_11	PF05339	N/A	N/A	N/A	DUF739
COG	UHGV-0391592_11	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-0391592_11	PF05339,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0391592_13	PF12270,NF040944	N/A	N/A	N/A	N/A
UniRef90	UHGV-0391592_15	UniRef90_UPI001D0E65C2	161.0	0	N/A	N/A
structural_annotation	UHGV-0391592_15	PF12957	N/A	N/A	N/A	N/A
PHROG	UHGV-0391592_16	phrog_1733	76.0	4.1e-22	N/A	unknown function
eggNOG-mapper	UHGV-0391592_16	665956.HMPREF1032_03597	175.0	4.06377e-44	DNA binding	N/A
COG	UHGV-0391592_16	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0391592_16	PF03677	N/A	N/A	N/A	N/A
KOfam	UHGV-0391592_17	K03546	60.0	2.9e-17	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-0391592_17	phrog_1499	471.5	0	N/A	unknown function
UniRef90	UHGV-0391592_17	UniRef90_A0A3A6KBP8	745.0	0	Chromosome segregation protein SMC	N/A
eggNOG-mapper	UHGV-0391592_17	1235798.C817_04766	486.0	0	AAA ATPase domain	N/A
Pfam	UHGV-0391592_17	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-0391592_17	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0391592_17	PF11398,MF_00365,TIGR00634,COG0497	N/A	N/A	N/A	N/A
PHROG	UHGV-0391592_18	phrog_124	232.8	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0391592_18	UniRef90_UPI00122C2B12	555.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0391592_18	645991.Sgly_0321	358.0	0	AAA domain	N/A
Pfam	UHGV-0391592_18	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-0391592_18	PF13479,MF_00268,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-0391592_19	phrog_2698	194.6	0	N/A	unknown function
UniRef90	UHGV-0391592_19	UniRef90_A0A291T9B6	291.0	0	N/A	N/A
eggNOG-mapper	UHGV-0391592_19	394503.Ccel_3308	132.0	4.94e-37	N/A	N/A
structural_annotation	UHGV-0391592_19	PF05037	N/A	N/A	N/A	N/A
KOfam	UHGV-0391592_20	K17677	349.6	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-0391592_20	phrog_16	275.5	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0391592_20	UniRef90_A0A3A6K1C0	1000.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-0391592_20	610130.Closa_1369	768.0	0	DEAD-like helicases superfamily	N/A
PADLOC	UHGV-0391592_20	mREase_IV_00005	139.8	2.29995e-41	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0391592_20	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0391592_20	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0391592_20	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0391592_20	PF04851,PF16203,MF_01489,NF008521,COG1061	N/A	N/A	N/A	N/A
KOfam	UHGV-0391592_21	K07505	371.4	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-0391592_21	phrog_2597	1092.5	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0391592_21	UniRef90_A0A2A7AI73	1336.0	0	DNA primase	N/A
eggNOG-mapper	UHGV-0391592_21	742738.HMPREF9460_01357	875.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-0391592_21	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
Pfam	UHGV-0391592_21	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-0391592_21	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-0391592_21	PF13481,PF16793,PF08220,MF_00350,MF_00700,NF006606,NF001641,COG3598,COG3285	N/A	N/A	N/A	N/A
KOfam	UHGV-0391592_22	K01160	48.0	0.00000000000033	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0391592_22	phrog_140	93.3	2.7e-27	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0391592_22	UniRef90_UPI00122CFAB3	250.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0391592_22	394503.Ccel_3302	146.0	1.7236e-43	endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0391592_22	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0391592_22	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0391592_22	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0391592_23	phrog_36	78.3	1.1e-22	transcriptional regulator	transcription regulation
UniRef90	UHGV-0391592_23	UniRef90_A0A3A6JSY6	92.4	2.04e-21	Sigma-70 family RNA polymerase sigma factor	N/A
eggNOG-mapper	UHGV-0391592_23	748224.HMPREF9436_01463	101.0	1.29e-25	N/A	N/A
structural_annotation	UHGV-0391592_23	PF04545,MF_00674,NF005248,COG1595	N/A	N/A	N/A	N/A
PHROG	UHGV-0391592_24	phrog_338	99.9	3.1e-29	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0391592_24	UniRef90_A0A564SBG0	189.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0391592_24	1280698.AUJS01000007_gene1032	169.0	0	HNH endonuclease domain protein	N/A
Pfam	UHGV-0391592_24	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0391592_24	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0391592_24	PF01844,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-0391592_25	phrog_104	287.2	0	portal protein	head and packaging
UniRef90	UHGV-0391592_25	UniRef90_A0A564SBV0	691.0	0	Phage portal protein, SPP1 Gp6-like	N/A
eggNOG-mapper	UHGV-0391592_25	665950.HMPREF1025_02537	560.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0391592_25	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0391592_25	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-0391592_26	K11044	54.2	1.7e-16	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	N/A
PHROG	UHGV-0391592_26	phrog_2494	280.0	0	minor head protein	head and packaging
UniRef90	UHGV-0391592_26	UniRef90_UPI001F3BD4CE	224.0	0	polymorphic toxin type 50 domain-containing protein	N/A
eggNOG-mapper	UHGV-0391592_26	1280698.AUJS01000007_gene1034	221.0	0	cell adhesion	N/A
Pfam	UHGV-0391592_26	PF03496	N/A	N/A	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
COG	UHGV-0391592_26	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0391592_26	PF03496	N/A	N/A	N/A	N/A
PHROG	UHGV-0391592_28	phrog_17688	324.1	0	N/A	unknown function
UniRef90	UHGV-0391592_28	UniRef90_A0A564SCG0	797.0	0	Phage Terminase	N/A
eggNOG-mapper	UHGV-0391592_28	936375.HMPREF1152_0677	634.0	0	phage terminase, large subunit	N/A
COG	UHGV-0391592_28	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0391592_28	PF20441,PF03354,MF_04146,NF033889,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0391592_29	phrog_233	85.2	8e-25	head scaffolding protein	head and packaging
UniRef90	UHGV-0391592_29	UniRef90_A0A2S0L5H5	91.3	7.9e-21	Phage scaffold protein	N/A
eggNOG-mapper	UHGV-0391592_29	706433.HMPREF9430_01266	85.5	2.67e-19	N/A	N/A
structural_annotation	UHGV-0391592_29	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-0391592_30	phrog_32396	128.2	2.2e-38	N/A	unknown function
UniRef90	UHGV-0391592_30	UniRef90_A0A564SB39	540.0	0	Phage capsid family protein	N/A
eggNOG-mapper	UHGV-0391592_30	1321784.HMPREF1987_01073	366.0	0	Phage capsid family	N/A
Pfam	UHGV-0391592_30	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0391592_30	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-0391592_30	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0391592_32	phrog_137	108.7	3.1e-32	head-tail adaptor Ad1	connector
UniRef90	UHGV-0391592_32	UniRef90_A0A564SC88	208.0	0	Phage protein Gp19/Gp15/Gp42	N/A
eggNOG-mapper	UHGV-0391592_32	768726.HMPREF9178_1061	156.0	0	Phage protein Gp19/Gp15/Gp42	N/A
Pfam	UHGV-0391592_32	PF09355	N/A	N/A	N/A	Phage_Gp19
structural_annotation	UHGV-0391592_32	PF09355	N/A	N/A	N/A	N/A
PHROG	UHGV-0391592_33	phrog_501	78.4	8.1e-23	head closure Hc1	connector
UniRef90	UHGV-0391592_33	UniRef90_G2SN45	117.0	6.77e-32	N/A	N/A
eggNOG-mapper	UHGV-0391592_33	748224.HMPREF9436_00693	135.0	7.35001e-40	N/A	N/A
structural_annotation	UHGV-0391592_33	PF12206,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0391592_34	phrog_387	52.7	0.0000000000000066	neck protein	connector
eggNOG-mapper	UHGV-0391592_34	908337.HMPREF9257_0534	59.3	0.000000000104	N/A	N/A
PHROG	UHGV-0391592_35	phrog_123	43.5	0.0000000000054	tail terminator	connector
eggNOG-mapper	UHGV-0391592_35	748224.HMPREF9436_00695	172.0	0	N/A	N/A
structural_annotation	UHGV-0391592_35	PF06141	N/A	N/A	N/A	N/A
PHROG	UHGV-0391592_36	phrog_117	180.8	0	major tail protein	tail
UniRef90	UHGV-0391592_36	UniRef90_E2ZGB2	303.0	0	Prophage LambdaSa1, structural protein	N/A
eggNOG-mapper	UHGV-0391592_36	748224.HMPREF9436_00696	303.0	0	domain, Protein	N/A
COG	UHGV-0391592_36	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0391592_36	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0391592_37	phrog_1526	74.4	1.2e-21	N/A	unknown function
UniRef90	UHGV-0391592_37	UniRef90_A0A123T5V6	60.8	0.000000000373	N/A	N/A
eggNOG-mapper	UHGV-0391592_37	1214184.ALKY01000039_gene911	59.7	0.000000000177	N/A	N/A
PHROG	UHGV-0391592_38	phrog_1633	50.6	0.000000000000034	N/A	unknown function
UniRef90	UHGV-0391592_38	UniRef90_UPI001C392A95	61.2	0.00000000066	N/A	N/A
PHROG	UHGV-0391592_39	phrog_28775	253.1	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0391592_39	748224.HMPREF9436_00699	923.0	0	Phage tail tape measure protein, TP901 family	N/A
COG	UHGV-0391592_39	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-0391592_40	phrog_36410	46.7	0.00000000000046	N/A	unknown function
UniRef90	UHGV-0391592_40	UniRef90_A0A564T4N7	391.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0391592_40	748224.HMPREF9436_00700	513.0	0	Phage tail protein	N/A
structural_annotation	UHGV-0391592_40	PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0391592_41	phrog_538	124.7	6.8e-37	minor tail protein	tail
UniRef90	UHGV-0391592_41	UniRef90_A0A4U7JBL2	84.7	0.00000000000000791	Siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-0391592_41	755731.Clo1100_0557	92.4	2.63e-18	Siphovirus ReqiPepy6 Gp37-like protein	N/A
Pfam	UHGV-0391592_41	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-0391592_41	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0391592_42	phrog_9534	251.8	0	head protein	head and packaging
eggNOG-mapper	UHGV-0391592_42	748224.HMPREF9436_00702	314.0	0	COG NOG18825 non supervised orthologous group	N/A
structural_annotation	UHGV-0391592_42	PF21567	N/A	N/A	N/A	N/A
PHROG	UHGV-0391592_43	phrog_1382	46.1	0.00000000000037	N/A	unknown function
UniRef90	UHGV-0391592_43	UniRef90_A0A6N9P4T5	48.1	0.00000266	ASCH domain-containing protein	N/A
NCBIFam	UHGV-0391592_43	NF040910.1	N/A	N/A	CD1375 family protein	N/A
KOfam	UHGV-0391592_44	K08640	104.2	2e-30	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	N/A
PHROG	UHGV-0391592_44	phrog_894	116.4	2.7e-34	endolysin	lysis
UniRef90	UHGV-0391592_44	UniRef90_A0A3C0D0L9	240.0	0	Peptidase M15	N/A
eggNOG-mapper	UHGV-0391592_44	748224.HMPREF9436_03320	234.0	0	Peptidase M15	N/A
Pfam	UHGV-0391592_44	PF08291	N/A	N/A	Peptidase M15	Peptidase_M15_3
COG	UHGV-0391592_44	COG3108	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0391592_44	PF05951,COG3108	N/A	N/A	N/A	N/A
PHROG	UHGV-0391592_46	phrog_1863	71.5	6.4e-21	N/A	unknown function
eggNOG-mapper	UHGV-0391592_46	748224.HMPREF9436_01412	133.0	6.02001e-40	N/A	N/A
PHROG	UHGV-0391592_47	phrog_263	81.2	8e-24	holin	lysis
UniRef90	UHGV-0391592_47	UniRef90_A0A3E2UFE4	122.0	7.44e-35	Phage holin	N/A
eggNOG-mapper	UHGV-0391592_47	748224.HMPREF9436_01413	120.0	1.18e-34	SPP1 phage holin	N/A
Pfam	UHGV-0391592_47	PF04688	N/A	N/A	SPP1 phage holin	Holin_SPP1
NCBIFam	UHGV-0391592_47	TIGR01592.1	N/A	N/A	phage holin	N/A
structural_annotation	UHGV-0391592_47	PF04688,TIGR01592	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0391592	Yes	33,358	61	92	1
UHGV-1526668	No	31,036	61	85	1
UHGV-2134043	No	30,477	61	84	1
UHGV-1387108	No	31,415	60	83	1
UHGV-1451028	No	26,896	63	68	1
UHGV-1379880	No	21,984	63	63	1
UHGV-1525163	No	24,662	60	63	1
UHGV-1449143	No	24,892	63	62	1
UHGV-1383476	No	23,253	63	59	1
UHGV-1487947	No	19,806	63	58	1
UHGV-1395740	No	19,395	62	56	1
UHGV-1428036	No	20,975	63	56	1
UHGV-0156230	No	19,241	59	53	1
UHGV-1640199	No	16,385	63	48	1
UHGV-1637796	No	16,316	63	47	1
UHGV-1803631	No	15,844	63	46	1
UHGV-1809752	No	15,836	62	46	1
UHGV-1749628	No	15,459	62	45	1
UHGV-1765116	No	15,340	62	44	1
UHGV-1770221	No	15,093	62	44	1
UHGV-1698232	No	14,667	63	43	1
UHGV-1764957	No	15,123	62	43	1
UHGV-0392961	No	15,147	59	43	1
UHGV-1652188	No	14,270	63	41	1
UHGV-2144527	No	12,601	58	34	1
UHGV-1579005	No	11,530	63	33	1
UHGV-1788653	No	10,930	63	32	1
UHGV-0067713	No	10,063	64	29	1