vOTU vOTU-083971

vOTU: vOTU-083971

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-083971
Number of genomes	3
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Mediterraneibacter → Mediterraneibacter faecis
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00146 → vGENUS-00309 → vSUBGEN-35451 → vOTU-083971
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Mediterraneibacter → Mediterraneibacter faecis
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0149998
Biosample ID	SAMN05971480
Genome length (bp)	36,312 bps
CheckV completeness	99.90% (High-quality)
CDS count	50
CDS density	92.04%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Mediterraneibacter → Mediterraneibacter faecis	Total connections	324	Host agreement	73.46
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Mediterraneibacter → Mediterraneibacter faecis	Total connections	84	Host agreement	85.71

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0149998_1	K07273	183.9	0	acm; lysozyme	N/A
PHROG	UHGV-0149998_1	phrog_291	140.5	1.40004e-41	endolysin	lysis
UniRef90	UHGV-0149998_1	UniRef90_UPI000E4940E5	690.0	0	glycoside hydrolase family 25 protein	N/A
eggNOG-mapper	UHGV-0149998_1	515620.EUBELI_01316	199.0	0	Glycoside Hydrolase Family 25-like lysozyme endolysin	N/A
Pfam	UHGV-0149998_1	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0149998_1	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0149998_1	PF01183,NF003627,COG3757,COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0149998_2	PF13384,NF001074,COG3677	N/A	N/A	N/A	N/A
PHROG	UHGV-0149998_3	phrog_18218	134.8	2.5e-40	N/A	unknown function
UniRef90	UHGV-0149998_3	UniRef90_A0A373SUI3	192.0	0	Ribonuclease	N/A
eggNOG-mapper	UHGV-0149998_3	658655.HMPREF0988_02546	154.0	0	N/A	N/A
structural_annotation	UHGV-0149998_3	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0149998_4	phrog_1863	60.5	4.9e-18	N/A	unknown function
eggNOG-mapper	UHGV-0149998_4	1226322.HMPREF1545_04027	64.3	0.00000000000142	N/A	N/A
PHROG	UHGV-0149998_6	phrog_28673	174.6	0	tail protein	tail
UniRef90	UHGV-0149998_6	UniRef90_A0A1I0NKV5	139.0	1.6e-32	Cell shape-determining protein MreC	N/A
eggNOG-mapper	UHGV-0149998_6	1540090.A0A0A0RS40_9CAUD	160.0	3.69e-39	N/A	N/A
structural_annotation	UHGV-0149998_6	PF14606,NF007819	N/A	N/A	N/A	N/A
KOfam	UHGV-0149998_7	K10804	53.5	0.0000000000000027	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	N/A
Pfam	UHGV-0149998_7	PF13472	N/A	N/A	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
PHROG	UHGV-0149998_8	phrog_11037	132.4	4.8e-39	N/A	unknown function
UniRef90	UHGV-0149998_8	UniRef90_A0A1Q6K9M8	643.0	0	NlpC/P60 domain-containing protein	N/A
eggNOG-mapper	UHGV-0149998_8	33035.JPJF01000093_gene2240	321.0	0	NlpC/P60 family	N/A
Pfam	UHGV-0149998_8	PF18013	N/A	N/A	Phage tail lysozyme	Phage_lysozyme2
Pfam	UHGV-0149998_8	PF05382	N/A	N/A	Bacteriophage peptidoglycan hydrolase	Amidase_5
COG	UHGV-0149998_8	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0149998_8	PF18013,PF05382,NF033742,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-0149998_9	phrog_13289	414.1	0	tail protein	tail
UniRef90	UHGV-0149998_9	UniRef90_A0A1Q6KA70	1191.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0149998_9	1232446.BAIE02000002_gene836	476.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0149998_9	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0149998_9	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0149998_9	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0149998_9	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0149998_10	phrog_33	67.7	2.4e-19	distal tail protein Dit	tail
UniRef90	UHGV-0149998_10	UniRef90_D4M599	463.0	0	Phage putative tail component, N-terminal domain	N/A
eggNOG-mapper	UHGV-0149998_10	1235798.C817_02569	209.0	0	tail component	N/A
NCBIFam	UHGV-0149998_10	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0149998_10	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0149998_10	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-0149998_11	K10421	54.4	0.0000000000000011	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	N/A
PHROG	UHGV-0149998_11	phrog_23464	198.3	0	N/A	unknown function
UniRef90	UHGV-0149998_11	UniRef90_A0A7G5N113	202.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0149998_11	1232452.BAIB02000007_gene1616	467.0	0	phage tail tape measure protein	N/A
COG	UHGV-0149998_11	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
PHROG	UHGV-0149998_13	phrog_88	99.5	3.5e-29	major tail protein	tail
UniRef90	UHGV-0149998_13	UniRef90_D4M596	379.0	0	Phage major tail protein, phi13 family	N/A
Pfam	UHGV-0149998_13	PF04630	N/A	N/A	Phage tail tube protein	Phage_TTP_1
NCBIFam	UHGV-0149998_13	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0149998_13	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0149998_14	phrog_5	45.9	0.0000000000013	tail completion or Neck1 protein	connector
UniRef90	UHGV-0149998_14	UniRef90_D4M595	191.0	0	Phage protein, HK97 gp10 family	N/A
NCBIFam	UHGV-0149998_14	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0149998_14	TIGR01725,COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0149998_15	PF05657	N/A	N/A	N/A	N/A
UniRef90	UHGV-0149998_16	UniRef90_D4M593	209.0	0	Phage head-tail adaptor, putative, SPP1 family	N/A
NCBIFam	UHGV-0149998_16	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0149998_16	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0149998_18	phrog_10	88.6	6.1e-26	major head protein	head and packaging
UniRef90	UHGV-0149998_18	UniRef90_D4M591	721.0	0	Phage capsid family	N/A
eggNOG-mapper	UHGV-0149998_18	1232452.BAIB02000007_gene1625	471.0	0	Phage capsid family	N/A
Pfam	UHGV-0149998_18	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0149998_18	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0149998_18	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0149998_18	PF05065,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0149998_19	K01358	113.8	2e-33	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0149998_19	phrog_94	178.5	0	head maturation protease	head and packaging
UniRef90	UHGV-0149998_19	UniRef90_D4M590	504.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0149998_19	1235792.C808_00085	209.0	0	Clp protease	N/A
Pfam	UHGV-0149998_19	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0149998_19	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0149998_19	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0149998_20	phrog_12	68.9	3.8e-20	portal protein	head and packaging
UniRef90	UHGV-0149998_20	UniRef90_UPI00156D5DC9	586.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0149998_20	1232452.BAIB02000007_gene1627	278.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0149998_20	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0149998_20	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0149998_20	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0149998_21	phrog_9	258.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-0149998_21	UniRef90_D4M588	1134.0	0	Phage terminase-like protein, large subunit	N/A
eggNOG-mapper	UHGV-0149998_21	1232452.BAIB02000007_gene1629	534.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-0149998_21	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0149998_21	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0149998_21	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0149998_21	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0149998_22	phrog_5110	97.1	1.1e-28	terminase small subunit	head and packaging
UniRef90	UHGV-0149998_22	UniRef90_A0A1C5LZF0	101.0	2.43e-25	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-0149998_22	1211817.CCAT010000008_gene938	86.3	7.97e-20	Phage terminase, small subunit	N/A
Pfam	UHGV-0149998_22	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
COG	UHGV-0149998_22	COG5484	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0149998_22	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
KOfam	UHGV-0149998_23	K07451	51.3	0.000000000000023	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0149998_23	phrog_119	82.6	5e-24	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0149998_23	UniRef90_D4M587	283.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0149998_23	1232452.BAIB02000007_gene1631	94.0	5.44e-23	HNH nucleases	N/A
Pfam	UHGV-0149998_23	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0149998_23	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0149998_23	PF09889,COG4068	N/A	N/A	N/A	N/A
PHROG	UHGV-0149998_24	phrog_36	87.3	1.8e-25	transcriptional regulator	transcription regulation
UniRef90	UHGV-0149998_24	UniRef90_UPI001899709D	225.0	0	N/A	N/A
eggNOG-mapper	UHGV-0149998_24	658655.HMPREF0988_02569	218.0	0	sigma factor activity	N/A
Pfam	UHGV-0149998_24	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-0149998_24	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0149998_24	PF07374,MF_00674,NF007227,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-0149998_30	phrog_7566	115.9	1.4e-34	N/A	unknown function
eggNOG-mapper	UHGV-0149998_30	665950.HMPREF1025_02547	168.0	0	N/A	N/A
PHROG	UHGV-0149998_31	phrog_15077	93.6	3.7e-27	N/A	unknown function
UniRef90	UHGV-0149998_31	UniRef90_A0A3A6HZA9	233.0	0	N/A	N/A
eggNOG-mapper	UHGV-0149998_31	1280698.AUJS01000007_gene1019	375.0	0	N/A	N/A
structural_annotation	UHGV-0149998_31	PF11300,NF033725	N/A	N/A	N/A	N/A
PHROG	UHGV-0149998_32	phrog_8470	230.0	0	N/A	unknown function
UniRef90	UHGV-0149998_32	UniRef90_UPI001C01E393	586.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0149998_32	1280698.AUJS01000007_gene1018	857.0	0	N/A	N/A
Pfam	UHGV-0149998_32	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0149998_32	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0149998_33	phrog_4433	68.3	1.1e-23	N/A	unknown function
eggNOG-mapper	UHGV-0149998_33	1280698.AUJS01000007_gene1017	190.0	0	N/A	N/A
eggNOG-mapper	UHGV-0149998_34	1280698.AUJS01000007_gene1016	229.0	0	N/A	N/A
KOfam	UHGV-0149998_35	K03469	51.2	0.000000000000025	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-0149998_35	phrog_531	61.4	1.7e-17	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0149998_35	UniRef90_A0A844KCI1	291.0	0	Ribonuclease HI	N/A
eggNOG-mapper	UHGV-0149998_35	665950.HMPREF1025_02551	154.0	0	RNase H	N/A
Pfam	UHGV-0149998_35	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-0149998_35	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0149998_35	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
PHROG	UHGV-0149998_36	phrog_3584	152.9	1.4013e-45	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0149998_36	665950.HMPREF1025_02552	315.0	0	N/A	N/A
structural_annotation	UHGV-0149998_36	PF21578,NF041486	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0149998_40	PF11195	N/A	N/A	N/A	N/A
KOfam	UHGV-0149998_48	K18830	71.1	1.5e-20	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0149998_48	phrog_4	52.7	0.000000000000011	transcriptional repressor	transcription regulation
UniRef90	UHGV-0149998_48	UniRef90_A0A374EB41	243.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0149998_48	445972.ANACOL_03315	142.0	3.81013e-42	N/A	N/A
Pfam	UHGV-0149998_48	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0149998_48	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0149998_48	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0149998_49	phrog_38135	63.2	2.4e-18	N/A	unknown function
UniRef90	UHGV-0149998_49	UniRef90_UPI001F3985DB	705.0	0	N/A	N/A
eggNOG-mapper	UHGV-0149998_49	411465.PEPMIC_00706	78.2	0.0000000000000161	N/A	N/A
Pfam	UHGV-0149998_49	PF14020	N/A	N/A	N/A	DUF4236
COG	UHGV-0149998_49	COG0457	N/A	N/A	Tetratricopeptide (TPR) repeat	N/A
structural_annotation	UHGV-0149998_49	PF14020,PF21602	N/A	N/A	N/A	N/A
KOfam	UHGV-0149998_50	K06400	249.8	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0149998_50	phrog_95	262.5	0	integrase	integration and excision
UniRef90	UHGV-0149998_50	UniRef90_A0A374E9M4	1014.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-0149998_50	97139.C824_00068	710.0	0	Recombinase	N/A
Pfam	UHGV-0149998_50	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0149998_50	PF07508	N/A	N/A	Recombinase	Recombinase
COG	UHGV-0149998_50	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0149998_50	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0149998	Yes	36,312	42	100	1
UHGV-2158534	No	20,077	42	54	1
UHGV-2155855	No	13,385	42	38	1