vOTU vOTU-084120

vOTU: vOTU-084120

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-084120
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-01550 → vGENUS-12370 → vSUBGEN-18666 → vOTU-084120
Host lineage	Bacteria → Firmicutes → Bacilli → Staphylococcales → Gemellaceae → Gemella → Gemella morbillorum
Host range breadth	Species
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1447854
Biosample ID	SAMEA2737991
Genome length (bp)	36,941 bps
CheckV completeness	91.21% (High-quality)
CDS count	56
CDS density	93.39%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → Staphylococcales → Gemellaceae → Gemella → Gemella morbillorum	Total connections	2	Host agreement	100
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 91.21)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1447854_1	K07171	55.3	2.1e-16	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	N/A
PHROG	UHGV-1447854_1	phrog_1412	177.2	0	antitoxin mazE-like	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1447854_1	UniRef90_UPI001EE3FAB1	184.0	0	type II toxin-antitoxin system PemK/MazF family toxin	N/A
eggNOG-mapper	UHGV-1447854_1	1123314.AUIO01000016_gene810	86.7	2.19e-17	PemK-like, MazF-like toxin of type II toxin-antitoxin system	N/A
Pfam	UHGV-1447854_1	PF02452	N/A	N/A	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
COG	UHGV-1447854_1	COG2337	N/A	N/A	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	N/A
structural_annotation	UHGV-1447854_1	PF02452,NF007386,COG2337	N/A	N/A	N/A	N/A
PHROG	UHGV-1447854_2	phrog_87	94.4	8e-28	metallo-protease	other
UniRef90	UHGV-1447854_2	UniRef90_A0A2X4N3S2	277.0	0	Metallopeptidase immA	N/A
eggNOG-mapper	UHGV-1447854_2	1169144.KB910924_gene360	89.0	1.36e-20	IrrE N-terminal-like domain	N/A
Pfam	UHGV-1447854_2	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-1447854_2	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-1447854_2	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-1447854_3	K22300	53.8	0.0000000000000042	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1447854_3	phrog_8	55.0	0.0000000000000019	transcriptional regulator	transcription regulation
UniRef90	UHGV-1447854_3	UniRef90_A0A2X4NG63	112.0	1.41e-29	Helix-turn-helix	N/A
eggNOG-mapper	UHGV-1447854_3	562982.HMPREF0432_00732	106.0	6.83e-28	sequence-specific DNA binding	N/A
Pfam	UHGV-1447854_3	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1447854_3	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1447854_3	PF12844,MF_00584,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-1447854_4	UniRef90_UPI000E0C8486	70.1	0.0000000000000171	toxin-antitoxin system, antitoxin component, Xre family protein	N/A
structural_annotation	UHGV-1447854_4	PF21291,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1447854_9	phrog_585	87.5	1.4e-25	N/A	unknown function
UniRef90	UHGV-1447854_9	UniRef90_A0A3R6LXT7	100.0	7.76e-25	N/A	N/A
eggNOG-mapper	UHGV-1447854_9	411465.PEPMIC_00712	122.0	2.04e-34	N/A	N/A
Pfam	UHGV-1447854_9	PF10711	N/A	N/A	N/A	DUF2513
structural_annotation	UHGV-1447854_9	PF10711,TIGR04176,COG1695	N/A	N/A	N/A	N/A
PHROG	UHGV-1447854_11	phrog_173	89.0	6.2e-26	nucleoside triphosphate pyrophosphohydrolase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1447854_11	UniRef90_U2QNQ7	226.0	0	dUTP diphosphatase	N/A
eggNOG-mapper	UHGV-1447854_11	1321820.HMPREF1983_00952	226.0	0	dUTPase	N/A
Pfam	UHGV-1447854_11	PF08761	N/A	N/A	dUTPase	dUTPase_2
COG	UHGV-1447854_11	COG4508	N/A	N/A	Dimeric dUTPase, all-alpha-NTP-PPase (MazG) superfamily	N/A
structural_annotation	UHGV-1447854_11	PF08761,COG4508	N/A	N/A	N/A	N/A
UniRef90	UHGV-1447854_12	UniRef90_A0A2X4N6I8	102.0	8.47e-25	N/A	N/A
KOfam	UHGV-1447854_13	K03546	58.6	7.2e-17	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-1447854_13	phrog_1499	463.7	0	N/A	unknown function
UniRef90	UHGV-1447854_13	UniRef90_A0A3P1S6S6	409.0	0	Chromosome segregation protein SMC	N/A
eggNOG-mapper	UHGV-1447854_13	394503.Ccel_3310	404.0	0	domain protein	N/A
Pfam	UHGV-1447854_13	PF02463	N/A	N/A	RecF/RecN/SMC N terminal domain	SMC_N
COG	UHGV-1447854_13	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-1447854_13	PF11398,MF_00365,NF008121,COG0497	N/A	N/A	N/A	N/A
PHROG	UHGV-1447854_14	phrog_124	259.0	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1447854_14	UniRef90_A0A380KHI0	416.0	0	N/A	N/A
eggNOG-mapper	UHGV-1447854_14	1403946.Q615_SPAC00127G0154	419.0	0	AAA domain	N/A
Pfam	UHGV-1447854_14	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-1447854_14	PF13479,MF_00268,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-1447854_15	phrog_2698	189.8	0	N/A	unknown function
UniRef90	UHGV-1447854_15	UniRef90_A0A4V0ECJ9	206.0	0	N/A	N/A
eggNOG-mapper	UHGV-1447854_15	936580.HMPREF1516_0737	204.0	0	N/A	N/A
structural_annotation	UHGV-1447854_15	PF17426,NF005674	N/A	N/A	N/A	N/A
KOfam	UHGV-1447854_16	K17677	370.0	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-1447854_16	phrog_16	289.8	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1447854_16	UniRef90_A0A097BY72	781.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-1447854_16	1486428.A0A097BY72_9CAUD	781.0	0	helicase activity	N/A
PADLOC	UHGV-1447854_16	mREase_IV_00005	137.6	9.99995e-41	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-1447854_16	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-1447854_16	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
structural_annotation	UHGV-1447854_16	PF04851,PF16203,MF_01489,NF008521,COG1061	N/A	N/A	N/A	N/A
KOfam	UHGV-1447854_17	K07505	425.4	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-1447854_17	phrog_2597	1185.0	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1447854_17	UniRef90_I2NHT6	1016.0	0	Primase C-terminal 2 domain protein	N/A
eggNOG-mapper	UHGV-1447854_17	936580.HMPREF1516_0733	1004.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-1447854_17	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
Pfam	UHGV-1447854_17	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-1447854_17	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-1447854_17	PF13481,PF16793,PF08220,MF_00350,MF_00700,NF006606,NF001641,COG3598,COG3285	N/A	N/A	N/A	N/A
PHROG	UHGV-1447854_18	phrog_140	62.2	1.1e-17	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1447854_18	UniRef90_I2NHS8	129.0	6.1e-36	Crossover junction endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-1447854_18	936580.HMPREF1516_0732	119.0	1.07e-32	crossover junction endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1447854_18	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1447854_18	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1447854_18	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
UniRef90	UHGV-1447854_19	UniRef90_A0A2X4N3T8	118.0	9.7e-34	Predicted transcriptional regulator	N/A
Pfam	UHGV-1447854_19	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-1447854_19	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1447854_19	PF13443,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-1447854_22	phrog_98	57.1	3.3e-16	N/A	unknown function
UniRef90	UHGV-1447854_22	UniRef90_A0A2X4RDW9	216.0	0	YopX protein	N/A
eggNOG-mapper	UHGV-1447854_22	562981.HMPREF0428_00992	75.5	0.00000000000000151	YopX protein	N/A
Pfam	UHGV-1447854_22	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-1447854_22	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-1447854_22	PF09643,TIGR01671	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1447854_25	562981.HMPREF0428_00991	86.3	5.67e-19	N/A	N/A
structural_annotation	UHGV-1447854_26	TIGR02338	N/A	N/A	N/A	N/A
PHROG	UHGV-1447854_27	phrog_36	53.4	0.0000000000000052	transcriptional regulator	transcription regulation
UniRef90	UHGV-1447854_27	UniRef90_A0A2X4N3V1	229.0	0	RNA polymerase sigma factor, sigma-70 family	N/A
structural_annotation	UHGV-1447854_27	PF08281,TIGR01636,COG2739	N/A	N/A	N/A	N/A
KOfam	UHGV-1447854_28	K07474	107.4	2.5e-31	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-1447854_28	phrog_51	123.2	2.1e-36	terminase small subunit	head and packaging
UniRef90	UHGV-1447854_28	UniRef90_A0A2X4NG90	218.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-1447854_28	562981.HMPREF0428_01825	188.0	0	Terminase small subunit	N/A
Pfam	UHGV-1447854_28	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-1447854_28	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1447854_28	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-1447854_29	K06909	371.3	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1447854_29	phrog_3717	280.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-1447854_29	UniRef90_A0A533I2U7	759.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1447854_29	1461246.X2KU22_9VIRU	664.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-1447854_29	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-1447854_29	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-1447854_29	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
HAMAP	UHGV-1447854_29	MF_04145	N/A	N/A	Terminase, large subunit	N/A
structural_annotation	UHGV-1447854_29	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1447854_30	phrog_64	319.7	0	portal protein	head and packaging
UniRef90	UHGV-1447854_30	UniRef90_A0A533I0P7	659.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1447854_30	272558.10176156	232.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1447854_30	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
NCBIFam	UHGV-1447854_30	TIGR01538.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-1447854_30	PF05133,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
PHROG	UHGV-1447854_31	phrog_115	229.4	0	minor head protein	head and packaging
UniRef90	UHGV-1447854_31	UniRef90_A0A533HX40	477.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-1447854_31	697281.Mahau_0569	182.0	0	N/A	N/A
Pfam	UHGV-1447854_31	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
Pfam	UHGV-1447854_31	PF15644	N/A	N/A	Papain fold toxin 1, glutamine deamidase	Gln_amidase
NCBIFam	UHGV-1447854_31	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
structural_annotation	UHGV-1447854_33	TIGR04165,COG3478	N/A	N/A	N/A	N/A
PHROG	UHGV-1447854_34	phrog_172	104.5	1.3e-30	head scaffolding protein	head and packaging
UniRef90	UHGV-1447854_34	UniRef90_A0A533I159	205.0	0	N/A	N/A
eggNOG-mapper	UHGV-1447854_34	272558.10176153	77.4	0.00000000000000734	N/A	N/A
Pfam	UHGV-1447854_34	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-1447854_34	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-1447854_35	phrog_422	156.1	0	major head protein	head and packaging
UniRef90	UHGV-1447854_35	UniRef90_A0A533HZ87	451.0	0	Sugar-binding protein	N/A
eggNOG-mapper	UHGV-1447854_35	1277891.M1IF90_9CAUD	234.0	0	N/A	N/A
PHROG	UHGV-1447854_36	phrog_132	55.5	9e-16	head-tail adaptor	connector
UniRef90	UHGV-1447854_36	UniRef90_A0A533I2P1	152.0	1.4013e-45	Phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-1447854_36	1120978.KB894087_gene438	51.6	0.000000604	Phage gp6-like head-tail connector protein	N/A
Pfam	UHGV-1447854_36	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-1447854_36	PF05135	N/A	N/A	N/A	N/A
PHROG	UHGV-1447854_43	phrog_58	129.0	0	tail length tape measure protein	tail
UniRef90	UHGV-1447854_43	UniRef90_A0A533HZZ3	599.0	0	Tape measure protein	N/A
eggNOG-mapper	UHGV-1447854_43	370438.PTH_2178	155.0	7.85e-36	Apolipoprotein A1/A4/E domain	N/A
Pfam	UHGV-1447854_43	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-1447854_43	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-1447854_43	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-1447854_43	PF20155,COG5280	N/A	N/A	N/A	N/A
UniRef90	UHGV-1447854_44	UniRef90_A0A8B1YSX1	179.0	0	Phage tail family protein	N/A
eggNOG-mapper	UHGV-1447854_44	999425.HMPREF9186_02046	171.0	0	N/A	N/A
COG	UHGV-1447854_44	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1447854_44	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1447854_45	phrog_2270	344.8	0	N/A	unknown function
UniRef90	UHGV-1447854_45	UniRef90_A0A420YQM7	470.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-1447854_45	562981.HMPREF0428_01809	323.0	0	N/A	N/A
Pfam	UHGV-1447854_45	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1447854_45	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
eggNOG-mapper	UHGV-1447854_46	1321820.HMPREF1983_00920	79.3	1.39e-18	N/A	N/A
PHROG	UHGV-1447854_47	phrog_1060	65.0	8.4e-19	N/A	unknown function
UniRef90	UHGV-1447854_47	UniRef90_A0A533I0A6	126.0	1.16e-34	N/A	N/A
eggNOG-mapper	UHGV-1447854_47	562981.HMPREF0428_01807	104.0	1.01e-26	N/A	N/A
Pfam	UHGV-1447854_47	PF07104	N/A	N/A	N/A	DUF1366
structural_annotation	UHGV-1447854_47	PF07104	N/A	N/A	N/A	N/A
PHROG	UHGV-1447854_48	phrog_1382	65.5	4.2e-19	N/A	unknown function
eggNOG-mapper	UHGV-1447854_48	665950.HMPREF1025_01332	48.1	0.000000419	N/A	N/A
NCBIFam	UHGV-1447854_48	NF040910.1	N/A	N/A	CD1375 family protein	N/A
structural_annotation	UHGV-1447854_48	NF040910	N/A	N/A	N/A	N/A
PHROG	UHGV-1447854_49	phrog_4257	77.8	1.3e-22	N/A	unknown function
eggNOG-mapper	UHGV-1447854_49	59241.O03977_BPDP1	65.1	0.00000000000864	N/A	N/A
PHROG	UHGV-1447854_50	phrog_962	80.5	2.2e-23	holin	lysis
UniRef90	UHGV-1447854_50	UniRef90_A0A2N6SFH9	96.3	2.57e-24	Phage holin	N/A
eggNOG-mapper	UHGV-1447854_50	1234679.BN424_2123	87.8	9.91e-22	Holin, phage phi LC3 family	N/A
Pfam	UHGV-1447854_50	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
NCBIFam	UHGV-1447854_50	TIGR01598.1	N/A	N/A	phage holin	N/A
COG	UHGV-1447854_50	COG5546	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1447854_50	COG5546	N/A	N/A	N/A	N/A
PHROG	UHGV-1447854_51	phrog_3861	163.6	0	amidase	lysis
UniRef90	UHGV-1447854_51	UniRef90_A0A4D6BFW0	165.0	0	Lysin	N/A
eggNOG-mapper	UHGV-1447854_51	1123318.KB904586_gene489	165.0	0	cysteine-type peptidase activity	N/A
Pfam	UHGV-1447854_51	PF05382	N/A	N/A	Bacteriophage peptidoglycan hydrolase	Amidase_5
COG	UHGV-1447854_51	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
PHROG	UHGV-1447854_52	phrog_1271	76.8	1.1e-22	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1447854_52	UniRef90_A0A7X9CKL2	80.5	0.0000000000000035	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1447854_52	1444310.JANV01000162_gene1198	58.2	0.000000257	HNH endonuclease	N/A
Pfam	UHGV-1447854_52	PF13392	N/A	N/A	HNH endonuclease	HNH_3
eggNOG-mapper	UHGV-1447854_53	873448.STRPO_0302	139.0	1.28e-38	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	N/A
COG	UHGV-1447854_53	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
PHROG	UHGV-1447854_55	phrog_2277	61.7	8.3e-18	N/A	unknown function
eggNOG-mapper	UHGV-1447854_55	1122146.AUHP01000011_gene254	60.8	0.00000000000813	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1447854	Yes	36,941	34	91	1