vOTU vOTU-084125

vOTU: vOTU-084125

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-084125
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira → Lachnospira eligens_A
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00117 → vGENUS-00172 → vSUBGEN-18668 → vOTU-084125
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira
Host range breadth	Genus
Lifestyle	temperate (Evidence: integrase)

Representative genome
Genome ID	UHGV-0067817
Biosample ID	N/A
Genome length (bp)	38,304 bps
CheckV completeness	99.90% (High-quality)
CDS count	50
CDS density	93.93%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira	Total connections	1083	Host agreement	98.71
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira → Lachnospira eligens_A	Total connections	182	Host agreement	78.02

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0067817_1	K14059	121.3	1.5e-35	int; integrase	N/A
PHROG	UHGV-0067817_1	phrog_1	98.6	8.9e-29	integrase	integration and excision
UniRef90	UHGV-0067817_1	UniRef90_A0A3R6DSU4	422.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0067817_1	622312.ROSEINA2194_03625	370.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0067817_1	PF02920	N/A	N/A	DNA binding domain of tn916 integrase	Integrase_DNA
Pfam	UHGV-0067817_1	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0067817_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0067817_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0067817_1	PF14659,MF_01808,TIGR02224,COG4973	N/A	N/A	N/A	N/A
UniRef90	UHGV-0067817_2	UniRef90_UPI0015FA1643	431.0	0	replication protein	N/A
eggNOG-mapper	UHGV-0067817_2	622312.ROSEINA2194_03627	206.0	0	N/A	N/A
PHROG	UHGV-0067817_3	phrog_199	46.3	0.00000000000043	holin	lysis
UniRef90	UHGV-0067817_3	UniRef90_A0A174PAV2	172.0	0	Phage-related holin (Lysis protein)	N/A
eggNOG-mapper	UHGV-0067817_3	411470.RUMGNA_02086	138.0	2.93e-40	N/A	N/A
Pfam	UHGV-0067817_3	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0067817_3	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0067817_3	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
PHROG	UHGV-0067817_5	phrog_1330	69.3	5.4e-28	tail protein	tail
eggNOG-mapper	UHGV-0067817_5	1437603.BMON_1128	128.0	2.2e-29	N/A	N/A
PHROG	UHGV-0067817_6	phrog_38044	83.5	0	N/A	unknown function
UniRef90	UHGV-0067817_6	UniRef90_A0A2V1JQ53	466.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0067817_6	1410624.JNKK01000045_gene547	150.0	2.49e-39	N/A	N/A
structural_annotation	UHGV-0067817_6	PF14874,NF038186	N/A	N/A	N/A	N/A
PHROG	UHGV-0067817_7	phrog_6616	147.4	9.24857e-44	tail protein	tail
eggNOG-mapper	UHGV-0067817_7	552396.HMPREF0863_01647	155.0	2.07e-36	Phage minor structural protein	N/A
COG	UHGV-0067817_7	COG4926	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-0067817_8	phrog_1401	63.0	5e-18	N/A	unknown function
UniRef90	UHGV-0067817_8	UniRef90_UPI000A16CD19	58.5	0.0000000234	N/A	N/A
eggNOG-mapper	UHGV-0067817_8	1232453.BAIF02000058_gene1640	63.5	0.000000000033	N/A	N/A
structural_annotation	UHGV-0067817_8	PF07761	N/A	N/A	N/A	N/A
PHROG	UHGV-0067817_9	phrog_1194	82.4	4.8e-24	N/A	unknown function
eggNOG-mapper	UHGV-0067817_9	33035.JPJF01000093_gene2242	155.0	0	N/A	N/A
structural_annotation	UHGV-0067817_9	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0067817_10	phrog_1535	282.4	0	tail length tape measure protein	tail
UniRef90	UHGV-0067817_10	UniRef90_R6TDK7	351.0	0	Phage-related protein-like protein	N/A
eggNOG-mapper	UHGV-0067817_10	33035.JPJF01000093_gene2243	341.0	0	phage tail tape measure protein	N/A
COG	UHGV-0067817_10	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0067817_10	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0067817_11	phrog_8355	88.1	4.9e-26	N/A	unknown function
UniRef90	UHGV-0067817_11	UniRef90_UPI0006BBA9AA	110.0	1.75e-29	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0067817_11	1151292.QEW_2424	105.0	5.07e-29	N/A	N/A
PHROG	UHGV-0067817_12	phrog_8300	67.4	2e-19	N/A	unknown function
eggNOG-mapper	UHGV-0067817_12	1151292.QEW_2425	60.8	0.000000000154	N/A	N/A
structural_annotation	UHGV-0067817_12	PF06896	N/A	N/A	N/A	N/A
PHROG	UHGV-0067817_13	phrog_820	117.7	7.3e-35	major tail protein	tail
UniRef90	UHGV-0067817_13	UniRef90_T3DDR1	171.0	0	Phage major tail 2 family protein	N/A
eggNOG-mapper	UHGV-0067817_13	1151292.QEW_2426	171.0	0	N/A	N/A
structural_annotation	UHGV-0067817_13	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0067817_14	phrog_2595	79.3	4.3e-23	head-tail connector protein	connector
UniRef90	UHGV-0067817_14	UniRef90_UPI001D068DAC	137.0	8.45e-39	minor capsid protein	N/A
eggNOG-mapper	UHGV-0067817_14	742740.HMPREF9474_03510	125.0	7.13e-35	N/A	N/A
Pfam	UHGV-0067817_14	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-0067817_14	PF12691	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0067817_15	742740.HMPREF9474_03509	127.0	1.4e-35	N/A	N/A
PHROG	UHGV-0067817_16	phrog_8710	125.6	1.9e-37	N/A	unknown function
eggNOG-mapper	UHGV-0067817_16	742740.HMPREF9474_03508	123.0	4.07e-35	N/A	N/A
structural_annotation	UHGV-0067817_16	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0067817_17	phrog_541	68.4	1.1e-19	head-tail adaptor	connector
eggNOG-mapper	UHGV-0067817_17	1304866.K413DRAFT_0783	147.0	2.8026e-44	N/A	N/A
PHROG	UHGV-0067817_18	phrog_422	260.0	0	major head protein	head and packaging
UniRef90	UHGV-0067817_18	UniRef90_A0A3D5M0U8	503.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0067817_18	663278.Ethha_1589	378.0	0	N/A	N/A
structural_annotation	UHGV-0067817_18	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0067817_19	phrog_2303	139.1	3.20001e-41	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-0067817_19	483218.BACPEC_01156	134.0	2.6e-36	N/A	N/A
PHROG	UHGV-0067817_20	phrog_872	169.7	0	N/A	unknown function
UniRef90	UHGV-0067817_20	UniRef90_A0A413P9Z7	214.0	0	N/A	N/A
eggNOG-mapper	UHGV-0067817_20	573413.Spirs_2170	177.0	0	N/A	N/A
Pfam	UHGV-0067817_20	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-0067817_20	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-0067817_20	PF11195	N/A	N/A	N/A	N/A
PHROG	UHGV-0067817_23	phrog_581	244.2	0	minor head protein	head and packaging
UniRef90	UHGV-0067817_23	UniRef90_A0A413YU28	664.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0067817_23	33035.JPJF01000093_gene2255	444.0	0	N/A	N/A
Pfam	UHGV-0067817_23	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0067817_23	COG5585	N/A	N/A	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	N/A
structural_annotation	UHGV-0067817_23	PF06152,PF03496,NF041404	N/A	N/A	N/A	N/A
PHROG	UHGV-0067817_24	phrog_533	286.1	0	portal protein	head and packaging
UniRef90	UHGV-0067817_24	UniRef90_A0A413YU90	948.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0067817_24	33035.JPJF01000093_gene2257	551.0	0	N/A	N/A
structural_annotation	UHGV-0067817_24	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0067817_25	K06909	97.6	1.6e-28	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0067817_25	phrog_2	70.8	3.1e-20	terminase large subunit	head and packaging
UniRef90	UHGV-0067817_25	UniRef90_A0A413YU24	950.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0067817_25	1391647.AVSV01000003_gene1802	523.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0067817_25	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0067817_25	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0067817_25	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0067817_26	K07474	149.6	3.08286e-44	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0067817_26	phrog_51	159.9	0	terminase small subunit	head and packaging
UniRef90	UHGV-0067817_26	UniRef90_A0A413YU49	340.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-0067817_26	1499683.CCFF01000014_gene3916	148.0	1.98984e-42	Terminase small subunit	N/A
Pfam	UHGV-0067817_26	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0067817_26	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0067817_26	PF03592,COG3728	N/A	N/A	N/A	N/A
PHROG	UHGV-0067817_27	phrog_36	63.9	3.4e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0067817_27	UniRef90_UPI001C529453	70.1	0.00000000000146	RNA polymerase subunit sigma-24	N/A
eggNOG-mapper	UHGV-0067817_27	397290.C810_01391	103.0	3.3e-26	N/A	N/A
structural_annotation	UHGV-0067817_27	PF02996	N/A	N/A	N/A	N/A
KOfam	UHGV-0067817_31	K00558	233.0	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0067817_31	phrog_116	270.2	0	DNA methyltransferase	other
UniRef90	UHGV-0067817_31	UniRef90_A0A356C6K5	898.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0067817_31	1235800.C819_02255	664.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0067817_31	MTase_II_00020	115.7	2.4e-38	Type II methyltransferase	RM
Pfam	UHGV-0067817_31	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0067817_31	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0067817_31	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-0067817_32	K07319	88.7	4.1e-26	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-0067817_32	phrog_16	225.0	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0067817_32	UniRef90_A0A356C6C6	1489.0	0	DNA methylase N-4	N/A
eggNOG-mapper	UHGV-0067817_32	1298920.KI911353_gene2709	1392.0	0	DEAD-like helicases superfamily	N/A
Pfam	UHGV-0067817_32	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-0067817_32	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0067817_32	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-0067817_32	PF01555,PF16203,PF04851,MF_01821,MF_00472,NF041790,NF008572,COG0553,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-0067817_34	phrog_7566	98.9	3e-29	N/A	unknown function
eggNOG-mapper	UHGV-0067817_34	665950.HMPREF1025_02547	71.2	0.000000000000276	N/A	N/A
structural_annotation	UHGV-0067817_35	PF02179,NF011863	N/A	N/A	N/A	N/A
KOfam	UHGV-0067817_36	K03469	65.9	9.1e-19	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-0067817_36	phrog_531	64.2	2.2e-18	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0067817_36	UniRef90_A0A413YU26	268.0	0	RNase H type-1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0067817_36	1121447.JONL01000002_gene2134	75.9	0.00000000000000243	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	N/A
Pfam	UHGV-0067817_36	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-0067817_36	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0067817_36	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
PHROG	UHGV-0067817_37	phrog_3584	162.9	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0067817_37	641107.CDLVIII_1314	153.0	5.46506e-43	N/A	N/A
structural_annotation	UHGV-0067817_37	PF21578	N/A	N/A	N/A	N/A
UniRef90	UHGV-0067817_43	UniRef90_A0A413YU34	130.0	3.31e-38	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0067817_43	706433.HMPREF9430_01294	80.1	5.16e-19	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0067817_43	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0067817_43	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0067817_44	K22299	64.2	3.1e-18	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0067817_44	phrog_8	75.8	8.4e-22	transcriptional regulator	transcription regulation
UniRef90	UHGV-0067817_44	UniRef90_A0A413YU20	253.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0067817_44	553973.CLOHYLEM_07297	89.4	2.29e-21	Transcriptional	N/A
PADLOC	UHGV-0067817_44	retron_type_VI_hth_cluster2_1	53.4	0.0000000000000053	N/A	Retron
Pfam	UHGV-0067817_44	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0067817_44	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0067817_44	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0067817_45	phrog_20886	53.7	0.0000000000000027	N/A	unknown function
UniRef90	UHGV-0067817_45	UniRef90_UPI0013E038FD	53.1	0.000000137	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0067817_45	861450.HMPREF0080_02020	47.8	0.00000413	N/A	N/A
structural_annotation	UHGV-0067817_45	PF06114	N/A	N/A	N/A	N/A
UniRef90	UHGV-0067817_46	UniRef90_UPI0006C337A0	223.0	0	tetratricopeptide repeat protein	N/A
eggNOG-mapper	UHGV-0067817_46	2754.EH55_11435	169.0	8.40779e-45	cell adhesion	N/A
COG	UHGV-0067817_46	COG2369	N/A	N/A	N/A	N/A
KOfam	UHGV-0067817_47	K06400	367.0	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0067817_47	phrog_95	359.2	0	integrase	integration and excision
UniRef90	UHGV-0067817_47	UniRef90_A0A413YU13	907.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-0067817_47	411462.DORLON_00823	455.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0067817_47	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0067817_47	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0067817_47	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0067817_47	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0067817_47	PF00239,PF07508,PF13408,NF041201,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-0067817_48	phrog_5763	85.9	5.3e-25	N/A	unknown function
eggNOG-mapper	UHGV-0067817_48	1033744.CAEL01000026_gene1411	108.0	3e-25	N/A	N/A
PHROG	UHGV-0067817_49	phrog_1281	132.6	1.8e-39	N/A	unknown function
UniRef90	UHGV-0067817_49	UniRef90_UPI00164A9B39	147.0	1.15047e-42	N/A	N/A
eggNOG-mapper	UHGV-0067817_49	1508644.SFBmNL_01513	144.0	3.29025e-42	N/A	N/A
Pfam	UHGV-0067817_49	PF13274	N/A	N/A	Antitoxin SocA-like, Panacea domain	SocA_Panacea
COG	UHGV-0067817_49	COG3600	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0067817_49	PF13274,COG3600	N/A	N/A	N/A	N/A
KOfam	UHGV-0067817_50	K06334	44.4	0.0000000000028	cotJC; spore coat protein JC	N/A
eggNOG-mapper	UHGV-0067817_50	515620.EUBELI_00515	72.4	0.0000000000000113	N/A	N/A
COG	UHGV-0067817_50	COG3546	N/A	N/A	Mn-containing catalase (includes spore coat protein CotJC)	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0067817	Yes	38,304	38	100	1