vOTU vOTU-084186

vOTU: vOTU-084186

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-084186
Number of genomes	2
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_D → Ruminococcus_D sp000434695
Taxonomy (UHGV)	vFAM-00060 → vSUBFAM-02264 → vOTU-084186
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_D → Ruminococcus_D sp000434695
Host range breadth	Species
Lifestyle	temperate (Evidence: integrase)

Representative genome
Genome ID	UHGV-0095620
Biosample ID	SAMEA3541574
Genome length (bp)	28,109 bps
CheckV completeness	74.77% (Medium-quality)
CDS count	41
CDS density	91.83%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_D → Ruminococcus_D sp000434695	Total connections	41	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_D → Ruminococcus_D sp000434695	Total connections	36	Host agreement	94.44

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 74.77)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0095620_1	phrog_1535	334.9	0	tail length tape measure protein	tail
UniRef90	UHGV-0095620_1	UniRef90_W0U887	534.0	0	Putative minor tail protein	N/A
eggNOG-mapper	UHGV-0095620_1	1160721.RBI_II00528	534.0	0	Phage tail tape measure protein, TP901 family	N/A
COG	UHGV-0095620_1	COG1006	N/A	N/A	Multisubunit Na+/H+ antiporter, MnhC subunit	N/A
structural_annotation	UHGV-0095620_1	PF20155,TIGR01760,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-0095620_2	phrog_706	125.9	3.1e-37	N/A	unknown function
UniRef90	UHGV-0095620_2	UniRef90_UPI001D078E13	376.0	0	bacteriophage Gp15 family protein	N/A
eggNOG-mapper	UHGV-0095620_2	1449050.JNLE01000003_gene3882	184.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0095620_2	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0095620_2	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0095620_3	phrog_11299	107.6	9.2e-32	N/A	unknown function
eggNOG-mapper	UHGV-0095620_3	1160721.RBI_II00531	171.0	0	N/A	N/A
structural_annotation	UHGV-0095620_3	PF20378	N/A	N/A	N/A	N/A
PHROG	UHGV-0095620_4	phrog_3099	91.0	1.5e-26	N/A	unknown function
eggNOG-mapper	UHGV-0095620_4	1160721.RBI_II00532	145.0	6.82432e-43	N/A	N/A
PHROG	UHGV-0095620_5	phrog_3266	86.6	2.4e-25	tail completion	connector
UniRef90	UHGV-0095620_5	UniRef90_UPI0018994F5C	57.4	0.000000124	chloramphenicol resistance protein	N/A
eggNOG-mapper	UHGV-0095620_5	1160721.RBI_II00533	192.0	0	N/A	N/A
structural_annotation	UHGV-0095620_5	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0095620_6	phrog_556	116.5	1.3e-34	minor head protein	head and packaging
UniRef90	UHGV-0095620_6	UniRef90_UPI001D06F225	233.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0095620_6	1160721.RBI_II00534	174.0	0	Minor capsid protein	N/A
Pfam	UHGV-0095620_6	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0095620_6	PF11114	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0095620_7	1449050.JNLE01000003_gene3887	53.1	0.000000188	N/A	N/A
Pfam	UHGV-0095620_7	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0095620_7	PF20536,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0095620_8	phrog_541	68.7	7.3e-20	head-tail adaptor	connector
eggNOG-mapper	UHGV-0095620_8	642492.Clole_0822	83.2	3.96e-19	N/A	N/A
PHROG	UHGV-0095620_9	phrog_3281	47.0	0.00000000000047	endonuclease VII	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0095620_9	UniRef90_UPI000F525D4E	67.0	0.000000000000385	Rho termination factor N-terminal domain-containing protein	N/A
PHROG	UHGV-0095620_10	phrog_422	240.6	0	major head protein	head and packaging
UniRef90	UHGV-0095620_10	UniRef90_W0U896	508.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0095620_10	1160721.RBI_II00538	508.0	0	N/A	N/A
structural_annotation	UHGV-0095620_10	PF05065,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0095620_11	phrog_194	98.8	6.9e-29	head scaffolding protein	head and packaging
UniRef90	UHGV-0095620_11	UniRef90_UPI001D08023A	299.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0095620_11	1408437.JNJN01000045_gene593	74.3	0.0000000000000549	Phage minor structural protein GP20	N/A
Pfam	UHGV-0095620_11	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0095620_11	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0095620_12	phrog_3711	53.8	0.0000000000000029	N/A	unknown function
PHROG	UHGV-0095620_13	phrog_581	314.8	0	minor head protein	head and packaging
UniRef90	UHGV-0095620_13	UniRef90_UPI001D08F710	811.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0095620_13	1160721.RBI_II00541	630.0	0	N/A	N/A
Pfam	UHGV-0095620_13	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0095620_13	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0095620_13	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0095620_14	phrog_533	299.4	0	portal protein	head and packaging
UniRef90	UHGV-0095620_14	UniRef90_UPI001D092AED	994.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0095620_14	1160721.RBI_II00542	832.0	0	N/A	N/A
structural_annotation	UHGV-0095620_14	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0095620_15	K06909	77.3	2e-22	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0095620_15	phrog_2	77.6	2.4e-22	terminase large subunit	head and packaging
UniRef90	UHGV-0095620_15	UniRef90_UPI001D069476	908.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-0095620_15	1160721.RBI_II00543	770.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0095620_15	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0095620_15	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0095620_15	PF04466,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0095620_16	phrog_309	55.3	0.000000000000001	terminase small subunit	head and packaging
UniRef90	UHGV-0095620_16	UniRef90_W0U9H3	238.0	0	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-0095620_16	1160721.RBI_II00544	238.0	0	N/A	N/A
structural_annotation	UHGV-0095620_16	PF07141	N/A	N/A	N/A	N/A
KOfam	UHGV-0095620_17	K02601	77.5	2e-22	nusG; transcription termination/antitermination protein NusG	N/A
PHROG	UHGV-0095620_17	phrog_6386	74.8	1.2e-21	transcription antiterminator	transcription regulation
UniRef90	UHGV-0095620_17	UniRef90_UPI000F5398E7	188.0	0	transcription termination/antitermination NusG family protein	N/A
eggNOG-mapper	UHGV-0095620_17	1160721.RBI_II00545	177.0	0	Transcription termination factor nusG	N/A
Pfam	UHGV-0095620_17	PF02357	N/A	N/A	Transcription termination factor nusG	NusG
COG	UHGV-0095620_17	COG0250	N/A	N/A	Transcription termination/antitermination protein NusG	N/A
structural_annotation	UHGV-0095620_17	PF02357,MF_00951,NF033641,COG0250	N/A	N/A	N/A	N/A
PHROG	UHGV-0095620_18	phrog_426	94.5	1.7e-27	terminase small subunit	head and packaging
UniRef90	UHGV-0095620_18	UniRef90_UPI001D05DC57	349.0	0	N/A	N/A
eggNOG-mapper	UHGV-0095620_18	1160721.RBI_II00546	275.0	0	N/A	N/A
Pfam	UHGV-0095620_18	PF11985	N/A	N/A	Bacteriophage Mu, Gp27	Phage_Mu_Gp27
structural_annotation	UHGV-0095620_18	PF11985	N/A	N/A	N/A	N/A
PHROG	UHGV-0095620_19	phrog_25462	113.4	1.1e-33	N/A	unknown function
UniRef90	UHGV-0095620_19	UniRef90_UPI001D071891	208.0	0	type VI secretion protein	N/A
eggNOG-mapper	UHGV-0095620_19	1160721.RBI_II00547	182.0	0	N/A	N/A
structural_annotation	UHGV-0095620_19	PF01638,MF_01819,NF002926,COG1733	N/A	N/A	N/A	N/A
PHROG	UHGV-0095620_20	phrog_462	41.2	0.000000000028	lipoprotein	other
eggNOG-mapper	UHGV-0095620_20	1160721.RBI_II00548	89.7	1.74e-22	N/A	N/A
PHROG	UHGV-0095620_21	phrog_836	66.2	4.8e-19	late transcriptional activator	transcription regulation
UniRef90	UHGV-0095620_21	UniRef90_UPI001D08EE88	220.0	0	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0095620_21	1160721.RBI_II00549	113.0	3.95e-31	Mor transcription activator	N/A
Pfam	UHGV-0095620_21	PF08765	N/A	N/A	Mor transcription activator family	Mor
COG	UHGV-0095620_21	COG5566	N/A	N/A	Transcriptional regulator, middle operon regulator (Mor) family	N/A
structural_annotation	UHGV-0095620_21	PF08765,COG5566	N/A	N/A	N/A	N/A
PHROG	UHGV-0095620_22	phrog_286	48.7	0.00000000000014	N/A	unknown function
UniRef90	UHGV-0095620_22	UniRef90_UPI001D09810E	342.0	0	regulatory protein GemA	N/A
eggNOG-mapper	UHGV-0095620_22	1160721.RBI_II00550	195.0	0	N/A	N/A
Pfam	UHGV-0095620_22	PF06252	N/A	N/A	Bacteriophage Mu, GemA protein	GemA
structural_annotation	UHGV-0095620_22	PF06252	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0095620_23	1160721.RBI_II00551	213.0	0	N/A	N/A
AcrCatalog	UHGV-0095620_23	cluster_71843	213.0	0	NA	N/A
KOfam	UHGV-0095620_24	K06284	46.5	0.00000000000067	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	N/A
PHROG	UHGV-0095620_24	phrog_4681	44.3	0.0000000000023	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0095620_24	UniRef90_UPI001D06158D	172.0	0	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0095620_24	1160721.RBI_II00552	87.0	1.92e-21	SpoVT / AbrB like domain	N/A
Pfam	UHGV-0095620_24	PF04014	N/A	N/A	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
COG	UHGV-0095620_24	COG2002	N/A	N/A	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	N/A
structural_annotation	UHGV-0095620_24	PF15937,TIGR01439,NF004424,COG2002	N/A	N/A	N/A	N/A
PHROG	UHGV-0095620_25	phrog_4292	69.6	2.5e-20	N/A	unknown function
UniRef90	UHGV-0095620_25	UniRef90_I7J4K2	50.4	0.00000061	Phage related protein	N/A
eggNOG-mapper	UHGV-0095620_25	1160721.RBI_II00553	73.9	7.22e-17	N/A	N/A
KOfam	UHGV-0095620_26	K07132	64.8	1.3e-18	MuB; ATP-dependent target DNA activator	N/A
PHROG	UHGV-0095620_26	phrog_296	127.9	9.8e-38	DNA transposition protein	integration and excision
UniRef90	UHGV-0095620_26	UniRef90_UPI001D0672F9	595.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0095620_26	1160721.RBI_II00554	374.0	0	AAA domain	N/A
Pfam	UHGV-0095620_26	PF13401	N/A	N/A	AAA domain	AAA_22
COG	UHGV-0095620_26	COG2842	N/A	N/A	Bacteriophage DNA transposition protein, AAA+ family ATPase	N/A
structural_annotation	UHGV-0095620_26	PF13401,MF_01407,TIGR03015,COG2842	N/A	N/A	N/A	N/A
PHROG	UHGV-0095620_27	phrog_310	371.2	0	transposase	integration and excision
UniRef90	UHGV-0095620_27	UniRef90_UPI001D0737BD	1305.0	0	Mu transposase C-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0095620_27	1160721.RBI_II00555	1000.0	0	Mu transposase, C-terminal	N/A
PADLOC	UHGV-0095620_27	TnsB_0_V-K	65.3	4.5e-19	TnsB_0_V-K	CRISPR-CAS
Pfam	UHGV-0095620_27	PF09039	N/A	N/A	Mu DNA binding, I gamma subdomain	HTH_Tnp_Mu_2
Pfam	UHGV-0095620_27	PF00665	N/A	N/A	Integrase core domain	rve
Pfam	UHGV-0095620_27	PF09299	N/A	N/A	Mu transposase, C-terminal	Mu-transpos_C
COG	UHGV-0095620_27	COG2801	N/A	N/A	Transposase InsO and inactivated derivatives	N/A
structural_annotation	UHGV-0095620_27	PF02914,PF09039,PF09299,PF21531,NF033594,TIGR01764,COG3316,COG3311	N/A	N/A	N/A	N/A
AcrCatalog	UHGV-0095620_28	cluster_158759	89.0	3e-27	NA	N/A
KOfam	UHGV-0095620_29	K23779	65.3	1.5e-18	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
PHROG	UHGV-0095620_29	phrog_5823	53.0	0.0000000000000055	transcriptional regulator	transcription regulation
UniRef90	UHGV-0095620_29	UniRef90_UPI001D05C8BC	121.0	5.04e-35	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0095620_29	716541.ECL_03959	55.5	0.0000000167	Cro/C1-type HTH DNA-binding domain	N/A
PADLOC	UHGV-0095620_29	retron_type_VI_hth_cluster2_1	42.8	0.000000000016	N/A	Retron
Pfam	UHGV-0095620_29	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0095620_29	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0095620_29	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0095620_33	phrog_5671	106.5	2.1e-31	N/A	unknown function
eggNOG-mapper	UHGV-0095620_33	696281.Desru_1771	112.0	3.45e-30	N/A	N/A
KOfam	UHGV-0095620_34	K01356	88.9	1.1e-25	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0095620_34	phrog_4	134.9	7.2e-40	transcriptional repressor	transcription regulation
UniRef90	UHGV-0095620_34	UniRef90_UPI001D06195E	469.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0095620_34	1160721.RBI_II00559	291.0	0	Peptidase S24-like	N/A
Pfam	UHGV-0095620_34	PF07022	N/A	N/A	Bacteriophage CI repressor helix-turn-helix domain	Phage_CI_repr
Pfam	UHGV-0095620_34	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0095620_34	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0095620_34	PF00717,PF01381,MF_00015,NF041951,NF007621,COG2932	N/A	N/A	N/A	N/A
UniRef90	UHGV-0095620_35	UniRef90_R6SEH3	88.2	8.95e-18	TPR Domain containing protein	N/A
eggNOG-mapper	UHGV-0095620_35	1120746.CCNL01000013_gene1996	58.2	0.000000156	N/A	N/A
structural_annotation	UHGV-0095620_35	PF18768,MF_00994,NF008756,COG5010	N/A	N/A	N/A	N/A
KOfam	UHGV-0095620_36	K06400	254.7	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0095620_36	phrog_95	301.2	0	integrase	integration and excision
UniRef90	UHGV-0095620_36	UniRef90_A0A373UDZ0	694.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-0095620_36	411473.RUMCAL_00191	392.0	0	Site-specific recombinases DNA invertase Pin homologs	N/A
Pfam	UHGV-0095620_36	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0095620_36	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0095620_36	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0095620_36	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
KOfam	UHGV-0095620_37	K03088	110.3	2.8e-32	rpoE; RNA polymerase sigma-70 factor, ECF subfamily	N/A
PHROG	UHGV-0095620_37	phrog_1740	64.2	1.8e-18	RNA polymerase sigma factor	transcription regulation
UniRef90	UHGV-0095620_37	UniRef90_A0A1C6JG36	340.0	0	RNA polymerase sigma factor sigV	N/A
eggNOG-mapper	UHGV-0095620_37	1514668.JOOA01000002_gene2366	253.0	0	Sigma-70, region 4	N/A
Pfam	UHGV-0095620_37	PF04542	N/A	N/A	Sigma-70 region 2	Sigma70_r2
Pfam	UHGV-0095620_37	PF08281	N/A	N/A	Sigma-70, region 4	Sigma70_r4_2
NCBIFam	UHGV-0095620_37	TIGR02937.1	N/A	N/A	sigma-70 family RNA polymerase sigma factor	N/A
COG	UHGV-0095620_37	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A
structural_annotation	UHGV-0095620_37	PF08281,PF04542,MF_00962,TIGR02985,COG1595	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0095620_38	411474.COPEUT_01457	112.0	2.31e-27	N/A	N/A
PHROG	UHGV-0095620_39	phrog_13787	47.5	0.000000000000089	N/A	unknown function
UniRef90	UHGV-0095620_39	UniRef90_A0A373V151	265.0	0	Sigma-70 family RNA polymerase sigma factor	N/A
eggNOG-mapper	UHGV-0095620_39	411473.RUMCAL_00194	168.0	0	sigma factor activity	N/A
Pfam	UHGV-0095620_39	PF08281	N/A	N/A	Sigma-70, region 4	Sigma70_r4_2
COG	UHGV-0095620_39	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0095620_39	PF04545,MF_00245,NF009167,COG1595	N/A	N/A	N/A	N/A
PHROG	UHGV-0095620_40	phrog_563	122.3	3e-36	virion structural protein	head and packaging
UniRef90	UHGV-0095620_40	UniRef90_A0A0U1KXM2	119.0	4.63e-31	Putative bacteriophage protein	N/A
eggNOG-mapper	UHGV-0095620_40	1415774.U728_3750	142.0	1.15e-40	N/A	N/A
structural_annotation	UHGV-0095620_40	PF09956	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0095620	Yes	28,109	46	75	1
UHGV-0042682	No	45,262	44	100	1