vOTU vOTU-084206

vOTU: vOTU-084206

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-084206
Number of genomes	1
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00079 → vGENUS-09573 → vSUBGEN-11459 → vOTU-084206
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0245732
Biosample ID	N/A
Genome length (bp)	40,645 bps
CheckV completeness	99.57% (High-quality)
CDS count	66
CDS density	89.75%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger	Total connections	275	Host agreement	96
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.57)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0245732_1	phrog_4433	184.0	0	N/A	unknown function
eggNOG-mapper	UHGV-0245732_1	665950.HMPREF1025_01373	123.0	4.23e-32	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0245732_1	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
eggNOG-mapper	UHGV-0245732_3	596152.DesU5LDRAFT_1910	93.6	6.47e-21	N/A	N/A
structural_annotation	UHGV-0245732_3	PF03787,TIGR02581,COG1604	N/A	N/A	N/A	N/A
UniRef90	UHGV-0245732_4	UniRef90_A0A367GIH6	104.0	3.56e-27	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0245732_4	762051.LKI_01980	47.4	0.00000903	N/A	N/A
Pfam	UHGV-0245732_4	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0245732_4	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-0245732_4	PF05339,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0245732_5	phrog_8	52.9	0.0000000000000091	transcriptional regulator	transcription regulation
UniRef90	UHGV-0245732_5	UniRef90_UPI001C009F10	84.0	5.32e-20	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0245732_5	665950.HMPREF1025_02561	59.7	0.0000000000278	sequence-specific DNA binding	N/A
Pfam	UHGV-0245732_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0245732_5	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0245732_5	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0245732_6	phrog_8	51.5	0.000000000000023	transcriptional regulator	transcription regulation
UniRef90	UHGV-0245732_6	UniRef90_A0A2Z4QBH4	68.2	0.00000000000331	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0245732_6	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0245732_6	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0245732_6	PF12844,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0245732_7	phrog_585	88.3	6.5e-26	N/A	unknown function
UniRef90	UHGV-0245732_7	UniRef90_A0A2G0E8R9	71.2	0.000000000000424	N/A	N/A
eggNOG-mapper	UHGV-0245732_7	1158602.I590_03003	61.2	0.000000000557	N/A	N/A
Pfam	UHGV-0245732_7	PF10711	N/A	N/A	N/A	DUF2513
structural_annotation	UHGV-0245732_7	PF10711,TIGR04176,COG1695	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0245732_9	1280664.AUIX01000005_gene2823	53.9	0.00000298	N/A	N/A
KOfam	UHGV-0245732_10	K14059	163.7	0	int; integrase	N/A
PHROG	UHGV-0245732_10	phrog_1	155.8	0	integrase	integration and excision
UniRef90	UHGV-0245732_10	UniRef90_A0A1Y4T0F9	349.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0245732_10	748224.HMPREF9436_03382	272.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0245732_10	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0245732_10	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0245732_10	PF00589,PF14659,MF_01808,NF007246,COG4973	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0245732_12	1226322.HMPREF1545_00079	67.4	0.000000000000642	N/A	N/A
structural_annotation	UHGV-0245732_13	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-0245732_14	phrog_20016	191.5	0	N/A	unknown function
UniRef90	UHGV-0245732_14	UniRef90_A0A285PT46	192.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0245732_14	1226322.HMPREF1545_00077	171.0	0	N/A	N/A
structural_annotation	UHGV-0245732_14	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0245732_15	phrog_16490	182.2	0	N/A	unknown function
eggNOG-mapper	UHGV-0245732_15	1408437.JNJN01000043_gene803	80.5	0.00000000000000299	N/A	N/A
PHROG	UHGV-0245732_16	phrog_22984	75.2	2.7e-23	N/A	unknown function
PHROG	UHGV-0245732_17	phrog_21718	122.1	3.3e-36	N/A	unknown function
eggNOG-mapper	UHGV-0245732_17	397290.C810_05210	97.8	1.49e-23	N/A	N/A
PHROG	UHGV-0245732_18	phrog_3754	91.9	7.2e-27	N/A	unknown function
eggNOG-mapper	UHGV-0245732_18	476272.RUMHYD_01764	148.0	1.82169e-44	N/A	N/A
eggNOG-mapper	UHGV-0245732_20	78345.BMERY_0692	79.7	8.63e-18	N/A	N/A
structural_annotation	UHGV-0245732_20	PF07825,NF040990,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-0245732_21	phrog_1129	80.7	1e-23	holin	lysis
UniRef90	UHGV-0245732_21	UniRef90_UPI00051B7422	95.9	8.14e-24	phage holin family protein	N/A
eggNOG-mapper	UHGV-0245732_21	411460.RUMTOR_01325	92.0	4.52e-23	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0245732_21	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0245732_21	PF16079	N/A	N/A	N/A	N/A
PHROG	UHGV-0245732_22	phrog_1863	69.1	3.7e-20	N/A	unknown function
eggNOG-mapper	UHGV-0245732_22	693746.OBV_18260	114.0	4.36e-32	N/A	N/A
KOfam	UHGV-0245732_23	K07273	139.0	4.80001e-41	acm; lysozyme	N/A
PHROG	UHGV-0245732_23	phrog_291	109.0	4.4e-32	endolysin	lysis
UniRef90	UHGV-0245732_23	UniRef90_A0A1Q6T343	386.0	0	Peptidase_M23 domain-containing protein	N/A
eggNOG-mapper	UHGV-0245732_23	877424.ATWC01000009_gene1193	127.0	1.12e-28	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0245732_23	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
Pfam	UHGV-0245732_23	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0245732_23	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0245732_23	PF01551,PF01183,NF040883,COG0739,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0245732_27	phrog_17147	537.2	0	N/A	unknown function
eggNOG-mapper	UHGV-0245732_27	411459.RUMOBE_01720	516.0	0	N/A	N/A
structural_annotation	UHGV-0245732_27	PF16323	N/A	N/A	N/A	N/A
PHROG	UHGV-0245732_28	phrog_9534	123.1	2.7e-36	head protein	head and packaging
eggNOG-mapper	UHGV-0245732_28	491915.Aflv_0675	92.8	2.81e-17	cellulose 1,4-beta-cellobiosidase activity	N/A
COG	UHGV-0245732_28	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
structural_annotation	UHGV-0245732_28	PF18463,PF20747	N/A	N/A	N/A	N/A
PHROG	UHGV-0245732_29	phrog_538	110.5	1.4e-32	minor tail protein	tail
UniRef90	UHGV-0245732_29	UniRef90_UPI001C113FEF	221.0	0	siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-0245732_29	665956.HMPREF1032_02940	95.1	3.68e-19	N/A	N/A
Pfam	UHGV-0245732_29	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-0245732_29	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0245732_30	phrog_33	50.9	0.000000000000035	distal tail protein Dit	tail
UniRef90	UHGV-0245732_30	UniRef90_UPI001C0FCFFA	262.0	0	phage tail family protein	N/A
eggNOG-mapper	UHGV-0245732_30	1033737.CAEV01000029_gene285	96.7	1.39e-20	Phage tail protein	N/A
COG	UHGV-0245732_30	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0245732_30	PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0245732_31	phrog_1272	342.5	0	tail length tape measure protein	tail
UniRef90	UHGV-0245732_31	UniRef90_A0A6N8JML2	308.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0245732_31	411483.FAEPRAA2165_01911	360.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0245732_31	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0245732_31	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0245732_31	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0245732_31	PF20155,MF_04138,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-0245732_33	phrog_18646	50.0	0.000000000000049	N/A	unknown function
PHROG	UHGV-0245732_34	phrog_885	74.5	1.1e-21	major tail protein	tail
UniRef90	UHGV-0245732_34	UniRef90_A0A843J9F0	190.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0245732_34	1504822.CCNO01000012_gene492	218.0	0	N/A	N/A
structural_annotation	UHGV-0245732_34	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0245732_35	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-0245732_36	phrog_17977	80.9	1.1e-23	N/A	unknown function
UniRef90	UHGV-0245732_36	UniRef90_A0A285PT57	88.2	3.35e-20	Phage head-tail joining protein	N/A
structural_annotation	UHGV-0245732_36	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0245732_38	phrog_544	298.9	0	major head protein	head and packaging
UniRef90	UHGV-0245732_38	UniRef90_UPI0019576143	395.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0245732_38	411471.SUBVAR_06940	384.0	0	N/A	N/A
NCBIFam	UHGV-0245732_38	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0245732_38	PF05065,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0245732_39	phrog_194	49.1	0.0000000000001	head scaffolding protein	head and packaging
UniRef90	UHGV-0245732_39	UniRef90_A0A6B9SU02	101.0	4.49e-23	Fibronectin autolysin	N/A
structural_annotation	UHGV-0245732_39	PF06810,MF_02110	N/A	N/A	N/A	N/A
PHROG	UHGV-0245732_40	phrog_478	129.4	1.4e-38	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0245732_40	UniRef90_R6E548	167.0	0	Prophage pi1 protein 29	N/A
eggNOG-mapper	UHGV-0245732_40	1111121.HMPREF1247_0834	96.3	8.47e-24	N/A	N/A
PHROG	UHGV-0245732_41	phrog_5	74.4	1.4e-21	tail completion or Neck1 protein	connector
UniRef90	UHGV-0245732_41	UniRef90_A0A3A9EIF3	139.0	1.57e-39	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0245732_41	1504822.CCNO01000013_gene284	77.0	3.95e-16	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0245732_41	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-0245732_41	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0245732_41	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0245732_42	phrog_595	117.2	1.9e-34	head maturation protease	head and packaging
UniRef90	UHGV-0245732_42	UniRef90_A0A7X5E1T7	419.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0245732_42	1504822.CCNO01000013_gene286	179.0	0	cell adhesion	N/A
Pfam	UHGV-0245732_42	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0245732_42	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0245732_42	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0245732_43	phrog_64	172.2	0	portal protein	head and packaging
UniRef90	UHGV-0245732_43	UniRef90_UPI0018A8A301	591.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0245732_43	673376.F2VHW1_9CAUD	200.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0245732_43	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0245732_43	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-0245732_44	K06909	403.8	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0245732_44	phrog_3717	161.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-0245732_44	UniRef90_UPI001C3B9235	635.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0245732_44	411471.SUBVAR_06507	580.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0245732_44	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0245732_44	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0245732_44	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0245732_44	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0245732_44	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0245732_45	phrog_2412	60.2	3.5e-17	N/A	unknown function
UniRef90	UHGV-0245732_45	UniRef90_A0A0Z8EFE4	55.5	0.000000338	N/A	N/A
eggNOG-mapper	UHGV-0245732_45	742738.HMPREF9460_02504	53.5	0.000000226	N/A	N/A
structural_annotation	UHGV-0245732_47	PF17941,MF_01917,NF010490,COG3886	N/A	N/A	N/A	N/A
PHROG	UHGV-0245732_48	phrog_36	71.7	1.2e-20	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0245732_48	658655.HMPREF0988_02569	53.1	0.000000807	sigma factor activity	N/A
Pfam	UHGV-0245732_48	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-0245732_48	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0245732_48	PF04545,PF18323,MF_00674,NF009172,COG1191	N/A	N/A	N/A	N/A
Pfam	UHGV-0245732_54	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
KOfam	UHGV-0245732_56	K01160	58.9	1.5e-16	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0245732_56	phrog_34	64.2	2.4e-18	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0245732_56	UniRef90_UPI0018ABA1B6	151.0	8.40779e-45	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0245732_56	875454.BAEW01000002_gene491	108.0	6.49e-29	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0245732_56	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0245732_56	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0245732_56	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0245732_58	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-0245732_59	phrog_186	57.5	2.4e-16	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
Pfam	UHGV-0245732_59	PF19808	N/A	N/A	N/A	DUF6291
Pfam	UHGV-0245732_59	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-0245732_59	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
structural_annotation	UHGV-0245732_59	PF07261,TIGR01446,COG3935	N/A	N/A	N/A	N/A
PHROG	UHGV-0245732_60	phrog_4973	60.4	2.8e-17	N/A	unknown function
UniRef90	UHGV-0245732_60	UniRef90_A0A3D3Y5F2	66.2	0.00000000000111	DNA-binding protein	N/A
Pfam	UHGV-0245732_60	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-0245732_60	PF14090,TIGR00373,COG4738	N/A	N/A	N/A	N/A
KOfam	UHGV-0245732_61	K03111	136.8	2.4e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0245732_61	phrog_44	140.7	8.59977e-42	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0245732_61	UniRef90_A0A1Q6T150	186.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0245732_61	411471.SUBVAR_04646	179.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0245732_61	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0245732_61	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0245732_61	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0245732_61	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0245732_61	PF00436,MF_00984,NF005579,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0245732_62	phrog_72	47.7	0.00000000000013	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0245732_62	445972.ANACOL_01825	118.0	3.02e-31	N/A	N/A
structural_annotation	UHGV-0245732_62	PF05772	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0245732_63	1041142.ATTP01000043_gene5324	59.7	0.0000000795	N/A	N/A
PHROG	UHGV-0245732_66	phrog_27197	139.2	0	N/A	unknown function
eggNOG-mapper	UHGV-0245732_66	394503.Ccel_3068	86.7	2.82e-19	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0245732_66	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0245732_66	NF007410	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0245732	Yes	40,645	52	100	1