vOTU vOTU-084221

vOTU: vOTU-084221

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-084221
Number of genomes	2
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00134 → vGENUS-00111 → vSUBGEN-17824 → vOTU-084221
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0176879
Biosample ID	SAMN09781733
Genome length (bp)	33,610 bps
CheckV completeness	95.53% (High-quality)
CDS count	46
CDS density	92.42%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	1518	Host agreement	81.75
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae	Total connections	3	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 95.53)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0176879_1	phrog_20533	51.0	0.000000000000019	N/A	unknown function
UniRef90	UHGV-0176879_1	UniRef90_A0A7C6U4T3	183.0	0	PLD phosphodiesterase domain-containing protein	N/A
eggNOG-mapper	UHGV-0176879_1	1123058.KB894251_gene2369	73.9	0.000000000000141	N/A	N/A
PHROG	UHGV-0176879_2	phrog_5110	96.5	1.6e-28	terminase small subunit	head and packaging
UniRef90	UHGV-0176879_2	UniRef90_A0A7C6U502	114.0	6.92e-31	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0176879_2	1235798.C817_02582	82.0	8.38e-19	N/A	N/A
Pfam	UHGV-0176879_2	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0176879_2	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0176879_3	phrog_9	308.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-0176879_3	UniRef90_A0A412UM03	1034.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0176879_3	86416.Clopa_0337	636.0	0	Phage Terminase	N/A
Pfam	UHGV-0176879_3	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0176879_3	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0176879_3	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0176879_3	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0176879_4	phrog_12	97.4	1.2e-28	portal protein	head and packaging
UniRef90	UHGV-0176879_4	UniRef90_A0A412ULV9	744.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0176879_4	349161.Dred_2606	259.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0176879_4	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0176879_4	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0176879_4	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0176879_4	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0176879_5	K01358	139.1	4.19997e-41	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0176879_5	phrog_94	205.7	0	head maturation protease	head and packaging
UniRef90	UHGV-0176879_5	UniRef90_A0A412ULU1	452.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0176879_5	1211817.CCAT010000053_gene2131	174.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0176879_5	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0176879_5	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0176879_5	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0176879_6	phrog_10	121.9	5.9e-36	major head protein	head and packaging
UniRef90	UHGV-0176879_6	UniRef90_A0A412ULW9	738.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0176879_6	1211817.CCAT010000053_gene2132	323.0	0	Phage capsid family	N/A
Pfam	UHGV-0176879_6	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0176879_6	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0176879_6	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0176879_6	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0176879_7	phrog_749	53.6	0.0000000000000032	N/A	unknown function
UniRef90	UHGV-0176879_7	UniRef90_A0A1G5CMX8	108.0	7.47e-29	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0176879_7	1211817.CCAT010000053_gene2133	57.4	0.00000000233	N/A	N/A
PHROG	UHGV-0176879_8	phrog_19734	74.8	9.3e-22	N/A	unknown function
UniRef90	UHGV-0176879_8	UniRef90_UPI00057FE645	60.5	0.00000000157	phage head closure protein	N/A
eggNOG-mapper	UHGV-0176879_8	86416.Clopa_0343	63.2	0.0000000000284	N/A	N/A
NCBIFam	UHGV-0176879_8	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0176879_8	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0176879_9	879305.HMPREF9290_0134	52.8	0.000000265	N/A	N/A
structural_annotation	UHGV-0176879_9	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
UniRef90	UHGV-0176879_10	UniRef90_UPI000E5564A4	276.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0176879_10	1235792.C808_00089	50.1	0.00000847	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0176879_10	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0176879_10	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0176879_11	phrog_88	75.6	6.5e-22	major tail protein	tail
eggNOG-mapper	UHGV-0176879_11	1321782.HMPREF1986_01362	65.1	0.000000000263	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0176879_11	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0176879_11	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0176879_12	PF11836	N/A	N/A	N/A	N/A
KOfam	UHGV-0176879_13	K20283	67.5	3.1e-20	GOLGA4; golgin subfamily A member 4	N/A
PHROG	UHGV-0176879_13	phrog_1272	255.0	0	tail length tape measure protein	tail
UniRef90	UHGV-0176879_13	UniRef90_A0A412ULX0	1818.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0176879_13	588581.Cpap_1264	256.0	0	Tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0176879_13	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-0176879_13	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0176879_13	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0176879_14	phrog_33	65.7	1.1e-18	distal tail protein Dit	tail
UniRef90	UHGV-0176879_14	UniRef90_R6GVG8	70.9	0.0000000000617	Phage putative tail component N-domain protein	N/A
eggNOG-mapper	UHGV-0176879_14	1160721.RBI_I01575	81.3	0.00000000000000179	Phage tail protein	N/A
COG	UHGV-0176879_14	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0176879_14	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0176879_15	phrog_1067	100.4	1.7e-29	minor head protein	head and packaging
UniRef90	UHGV-0176879_15	UniRef90_UPI001B3C6B40	127.0	1.18e-29	phage tail protein	N/A
eggNOG-mapper	UHGV-0176879_15	1462527.CCDM010000003_gene3730	68.2	0.00000000209	gp58-like protein	N/A
COG	UHGV-0176879_15	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0176879_15	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0176879_16	PF10651,PF01095	N/A	N/A	N/A	N/A
PHROG	UHGV-0176879_17	phrog_4105	79.6	3e-23	N/A	unknown function
eggNOG-mapper	UHGV-0176879_17	1291050.JAGE01000001_gene433	72.8	0.00000000000000521	N/A	N/A
PHROG	UHGV-0176879_18	phrog_881	88.2	4.6e-26	holin	lysis
UniRef90	UHGV-0176879_18	UniRef90_A0A4Q7P349	103.0	1.07e-27	Dp-1 family holin	N/A
eggNOG-mapper	UHGV-0176879_18	742740.HMPREF9474_02251	105.0	4.79e-29	Putative phage holin Dp-1	N/A
Pfam	UHGV-0176879_18	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-0176879_18	PF16938	N/A	N/A	N/A	N/A
KOfam	UHGV-0176879_19	K01447	58.5	1.4e-16	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0176879_19	phrog_20388	305.9	0	endolysin	lysis
UniRef90	UHGV-0176879_19	UniRef90_A0A374N1L8	537.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0176879_19	1203606.HMPREF1526_00253	316.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0176879_19	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0176879_19	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0176879_19	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0176879_19	PF01510,PF01476,PF15591,MF_02014,MF_04111,MF_01354,NF008758,NF010723,TIGR00405,COG3023,COG5004,COG2139	N/A	N/A	N/A	N/A
KOfam	UHGV-0176879_20	K07729	60.9	2.2e-17	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0176879_20	phrog_3	43.3	0.0000000000035	transcriptional repressor	transcription regulation
Pfam	UHGV-0176879_20	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0176879_20	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0176879_20	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0176879_21	phrog_16123	65.4	8.3e-19	N/A	unknown function
eggNOG-mapper	UHGV-0176879_21	1064535.MELS_1123	87.4	4.76e-20	N/A	N/A
KOfam	UHGV-0176879_22	K14059	96.6	3.6e-28	int; integrase	N/A
PHROG	UHGV-0176879_22	phrog_1	117.8	1.2e-34	integrase	integration and excision
UniRef90	UHGV-0176879_22	UniRef90_A0A1G5CL52	800.0	0	Phage integrase family protein	N/A
eggNOG-mapper	UHGV-0176879_22	693746.OBV_41260	192.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0176879_22	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0176879_22	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0176879_22	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0176879_24	phrog_1914	147.0	9.66896e-44	N/A	unknown function
UniRef90	UHGV-0176879_24	UniRef90_UPI000E543E50	336.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0176879_24	1160721.RBI_I01604	164.0	0	N/A	N/A
Pfam	UHGV-0176879_24	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0176879_24	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0176879_24	PF06114,COG2856	N/A	N/A	N/A	N/A
UniRef90	UHGV-0176879_25	UniRef90_A0A373XLN2	270.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0176879_25	1235793.C809_00679	99.8	2.9e-25	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0176879_25	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0176879_25	PF05339,NF007257,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0176879_26	UniRef90_UPI001494A832	48.9	0.00000401	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0176879_26	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0176879_26	PF05339,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0176879_30	K00390	99.0	4.9e-29	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0176879_30	phrog_424	127.8	6.9e-38	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0176879_30	UniRef90_UPI001C034617	553.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-0176879_30	1408437.JNJN01000032_gene2312	348.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-0176879_30	BrxP_00001	81.7	6.4e-24	BrxP	BREX
Pfam	UHGV-0176879_30	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0176879_30	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0176879_30	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-0176879_31	phrog_6058	42.4	0.0000000000074	N/A	unknown function
structural_annotation	UHGV-0176879_31	NF033787	N/A	N/A	N/A	N/A
KOfam	UHGV-0176879_34	K03497	156.0	0	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0176879_34	phrog_6218	246.9	0	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0176879_34	UniRef90_UPI000E47CAB6	659.0	0	ParB/RepB/Spo0J family partition protein	N/A
eggNOG-mapper	UHGV-0176879_34	394503.Ccel_3306	236.0	0	Belongs to the ParB family	N/A
Pfam	UHGV-0176879_34	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
NCBIFam	UHGV-0176879_34	TIGR00180.1	N/A	N/A	ParB/RepB/Spo0J family partition protein	N/A
COG	UHGV-0176879_34	COG0710	N/A	N/A	3-dehydroquinate dehydratase	N/A
structural_annotation	UHGV-0176879_34	PF18579,MF_02015,TIGR00180,COG1475	N/A	N/A	N/A	N/A
KOfam	UHGV-0176879_35	K00390	95.8	3.5e-28	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0176879_35	phrog_424	120.4	1.3e-35	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0176879_35	UniRef90_UPI001C034617	578.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-0176879_35	1408437.JNJN01000032_gene2312	333.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-0176879_35	BrxP_00001	79.2	2.9e-23	BrxP	BREX
Pfam	UHGV-0176879_35	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0176879_35	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0176879_35	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-0176879_36	phrog_8684	74.1	3e-22	N/A	unknown function
UniRef90	UHGV-0176879_36	UniRef90_UPI000E48855B	257.0	0	YopX family protein	N/A
eggNOG-mapper	UHGV-0176879_36	411473.RUMCAL_00283	70.9	0.000000000000355	YopX protein	N/A
Pfam	UHGV-0176879_36	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0176879_36	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0176879_36	PF09643,TIGR01671	N/A	N/A	N/A	N/A
KOfam	UHGV-0176879_39	K22300	50.8	0.000000000000036	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0176879_39	phrog_8	56.4	7.1e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0176879_39	UniRef90_A0A374N9T4	92.4	1.87e-23	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0176879_39	525254.HMPREF0072_2111	70.5	0.00000000000000918	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-0176879_39	retron_type_VI_hth_cluster2_1	42.8	0.000000000015	N/A	Retron
Pfam	UHGV-0176879_39	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0176879_39	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0176879_39	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0176879_40	phrog_24518	86.9	2.2e-25	N/A	unknown function
eggNOG-mapper	UHGV-0176879_40	1519439.JPJG01000077_gene922	110.0	1.9e-27	N/A	N/A
PHROG	UHGV-0176879_41	phrog_824	145.8	1.30321e-43	N/A	unknown function
UniRef90	UHGV-0176879_41	UniRef90_A0A3D3D6C6	249.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0176879_41	397288.C806_00096	159.0	0	VRR_NUC	N/A
Pfam	UHGV-0176879_41	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-0176879_41	PF08774	N/A	N/A	N/A	N/A
PHROG	UHGV-0176879_44	phrog_3584	148.0	5.74532e-44	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0176879_44	1235800.C819_00515	66.6	0.000000000317	N/A	N/A
structural_annotation	UHGV-0176879_44	PF21578,NF041486	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0176879_45	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0176879_46	phrog_119	70.9	1.7e-20	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0176879_46	UniRef90_A0A412ULY9	226.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0176879_46	1158607.UAU_01026	101.0	1.45e-26	HNH endonuclease	N/A
Pfam	UHGV-0176879_46	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0176879_46	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0176879	Yes	33,610	40	96	1
UHGV-0193224	No	33,593	40	95	1