vOTU vOTU-084271

vOTU: vOTU-084271

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-084271
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00100 → vSUBFAM-06941 → vGENUS-18411 → vSUBGEN-34881 → vOTU-084271
Host lineage
Host range breadth
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-1496142
Biosample ID	N/A
Genome length (bp)	64,473 bps
CheckV completeness	99.90% (High-quality)
CDS count	92
CDS density	88.79%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method
CRISPR-predicted host lineage	Total connections	Host agreement
PHIST-predicted host lineage	Total connections	Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1496142_1	phrog_6493	69.1	5e-20	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1496142_1	1029718.SFBM_0770	74.7	0.00000000000363	DnaD domain protein	N/A
COG	UHGV-1496142_1	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
Pfam	UHGV-1496142_2	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1496142_2	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1496142_3	phrog_2546	57.2	5e-16	N/A	unknown function
eggNOG-mapper	UHGV-1496142_3	1345695.CLSA_c06570	67.8	0.0000000000341	TerD domain	N/A
COG	UHGV-1496142_3	COG2310	N/A	N/A	Stress response protein SCP2	N/A
UniRef90	UHGV-1496142_4	UniRef90_UPI0009B98306	69.7	0.000000000000704	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-1496142_4	1123058.KB894219_gene175	57.4	0.000000059	Transcriptional regulator	N/A
COG	UHGV-1496142_4	COG2932	N/A	N/A	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	N/A
PHROG	UHGV-1496142_6	phrog_757	59.0	5.4e-17	DNA methyltransferase	other
eggNOG-mapper	UHGV-1496142_6	1392486.JIAF01000004_gene836	309.0	0	N/A	N/A
AcrCatalog	UHGV-1496142_6	cluster_47493	295.0	0	NA	N/A
structural_annotation	UHGV-1496142_6	PF00145,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-1496142_9	phrog_155	144.3	6.69821e-43	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1496142_9	UniRef90_UPI0018981153	185.0	0	ERF family protein	N/A
eggNOG-mapper	UHGV-1496142_9	679190.HMPREF0650_0097	178.0	0	Erf family	N/A
Pfam	UHGV-1496142_9	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-1496142_9	PF04404,TIGR00607,COG5468	N/A	N/A	N/A	N/A
PHROG	UHGV-1496142_10	phrog_298	44.2	0.000000000000075	exonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1496142_10	1105171.H2A0A8_9CAUD	98.2	1.09e-20	nuclease activity	N/A
Pfam	UHGV-1496142_10	PF12705	N/A	N/A	PD-(D/E)XK nuclease superfamily	PDDEXK_1
structural_annotation	UHGV-1496142_10	PF12705,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
KOfam	UHGV-1496142_12	K03111	113.4	3.2e-33	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1496142_12	phrog_44	99.0	5.6e-29	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1496142_12	UniRef90_A0A1I0VWG9	102.0	4.55e-25	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1496142_12	1120968.AUBX01000016_gene1579	101.0	2.28e-25	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1496142_12	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1496142_12	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1496142_12	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1496142_12	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1496142_12	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1496142_13	phrog_319	87.8	9e-26	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1496142_13	UniRef90_UPI001EDBA2C3	145.0	3.18936e-42	N/A	N/A
eggNOG-mapper	UHGV-1496142_13	742767.HMPREF9456_02058	128.0	5.09e-36	N/A	N/A
Pfam	UHGV-1496142_13	PF07105	N/A	N/A	N/A	DUF1367
structural_annotation	UHGV-1496142_13	PF07105	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1496142_15	1158294.JOMI01000009_gene1122	61.6	0.00000000248	N/A	N/A
KOfam	UHGV-1496142_16	K17680	105.5	1.5e-35	PEO1; twinkle protein [EC:5.6.2.3]	N/A
PHROG	UHGV-1496142_16	phrog_239	103.6	1.8e-30	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1496142_16	UniRef90_A0A212IXA1	503.0	0	SF4 helicase domain-containing protein	N/A
eggNOG-mapper	UHGV-1496142_16	1232453.BAIF02000057_gene1145	422.0	0	DNA replication initiation	N/A
Pfam	UHGV-1496142_16	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-1496142_16	COG1241	N/A	N/A	DNA replicative helicase MCM subunit Mcm2, Cdc46/Mcm family	N/A
structural_annotation	UHGV-1496142_16	PF03796,PF16793,MF_01498,MF_00700,NF004109,NF040562,COG0305,COG1467	N/A	N/A	N/A	N/A
KOfam	UHGV-1496142_17	K00571	43.5	0.0000000000046	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
UniRef90	UHGV-1496142_17	UniRef90_UPI00189A9953	132.0	2.77e-37	site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-1496142_17	742740.HMPREF9474_02900	142.0	6.78004e-41	DNA methylase	N/A
PADLOC	UHGV-1496142_17	MTase_II_00157	42.0	0.0000000000043	Type II methyltransferase	RM
Pfam	UHGV-1496142_17	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1496142_17	COG2189	N/A	N/A	Adenine specific DNA methylase Mod	N/A
KOfam	UHGV-1496142_18	K02338	253.2	0	dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]	N/A
PHROG	UHGV-1496142_18	phrog_947	197.7	0	DNA polymerase processivity factor	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1496142_18	UniRef90_A0A353VQD3	207.0	0	Beta sliding clamp	N/A
eggNOG-mapper	UHGV-1496142_18	411477.PARMER_01865	158.0	2.69049e-42	Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria	N/A
Pfam	UHGV-1496142_18	PF00712	N/A	N/A	DNA polymerase III beta subunit, N-terminal domain	DNA_pol3_beta
Pfam	UHGV-1496142_18	PF02767	N/A	N/A	DNA polymerase III beta subunit, central domain	DNA_pol3_beta_2
Pfam	UHGV-1496142_18	PF02768	N/A	N/A	DNA polymerase III beta subunit, C-terminal domain	DNA_pol3_beta_3
NCBIFam	UHGV-1496142_18	TIGR00663.1	N/A	N/A	DNA polymerase III subunit beta	N/A
COG	UHGV-1496142_18	COG0592	N/A	N/A	DNA polymerase III sliding clamp (beta) subunit, PCNA homolog	N/A
structural_annotation	UHGV-1496142_18	PF02768,PF00712,PF02767,MF_00317,TIGR00663,COG0592	N/A	N/A	N/A	N/A
PHROG	UHGV-1496142_22	phrog_1770	92.4	5.4e-27	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1496142_22	742727.HMPREF9447_04887	68.9	0.00000000000147	N/A	N/A
structural_annotation	UHGV-1496142_22	PF16921,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
PHROG	UHGV-1496142_30	phrog_424	60.2	3.4e-17	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1496142_30	UniRef90_A0A3D1NRM5	238.0	0	Phosphoadenosine phosphosulfate reductase	N/A
eggNOG-mapper	UHGV-1496142_30	1235797.C816_01339	194.0	0	N/A	N/A
COG	UHGV-1496142_30	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
eggNOG-mapper	UHGV-1496142_32	1217708.F887_01958	48.5	0.00000634	N/A	N/A
PHROG	UHGV-1496142_43	phrog_1365	57.2	2.7e-16	N/A	unknown function
KOfam	UHGV-1496142_45	K08640	101.9	9.3e-30	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	N/A
PHROG	UHGV-1496142_45	phrog_894	94.0	1.7e-27	endolysin	lysis
UniRef90	UHGV-1496142_45	UniRef90_A0A143XLQ9	123.0	3.41e-33	Peptidase M15	N/A
eggNOG-mapper	UHGV-1496142_45	1236504.HMPREF2132_01945	111.0	2.95e-29	Peptidase M15	N/A
Pfam	UHGV-1496142_45	PF08291	N/A	N/A	Peptidase M15	Peptidase_M15_3
COG	UHGV-1496142_45	COG3108	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1496142_45	PF08291,COG3108	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1496142_46	470145.BACCOP_01117	92.4	1.09e-21	N/A	N/A
PHROG	UHGV-1496142_48	phrog_15610	135.2	1.3e-40	protease	other
UniRef90	UHGV-1496142_48	UniRef90_A0A0J6CFE9	134.0	9.13e-39	Membrane protein	N/A
eggNOG-mapper	UHGV-1496142_48	1347393.HG726024_gene2889	131.0	1.78e-38	N/A	N/A
PHROG	UHGV-1496142_50	phrog_19846	53.4	1.3e-25	N/A	unknown function
eggNOG-mapper	UHGV-1496142_50	1121100.JCM6294_565	121.0	8.84e-25	Phage minor structural protein	N/A
COG	UHGV-1496142_50	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1496142_51	PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1496142_52	phrog_9959	237.3	0	tail length tape measure protein	tail
UniRef90	UHGV-1496142_52	UniRef90_UPI001BA8AAEB	305.0	0	tape measure protein	N/A
eggNOG-mapper	UHGV-1496142_52	1127692.HMPREF9075_00026	229.0	0	Tape measure domain protein	N/A
Pfam	UHGV-1496142_52	PF20155	N/A	N/A	Tape measure protein	TMP_3
COG	UHGV-1496142_52	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
eggNOG-mapper	UHGV-1496142_53	742727.HMPREF9447_04837	67.4	0.00000000000611	N/A	N/A
structural_annotation	UHGV-1496142_54	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1496142_57	PF19586	N/A	N/A	N/A	N/A
UniRef90	UHGV-1496142_58	UniRef90_A0A2V3PKY2	60.5	0.00000000744	Flg_new_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-1496142_58	742727.HMPREF9447_04832	77.8	8.14e-17	N/A	N/A
structural_annotation	UHGV-1496142_58	PF20449	N/A	N/A	N/A	N/A
PHROG	UHGV-1496142_59	phrog_29	90.7	1.5e-26	major head protein	head and packaging
UniRef90	UHGV-1496142_59	UniRef90_A0A2V3PU71	258.0	0	Major capsid protein E	N/A
eggNOG-mapper	UHGV-1496142_59	525257.HMPREF0204_11357	56.2	0.00000745	Phage major capsid protein E	N/A
Pfam	UHGV-1496142_59	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-1496142_59	PF03864,MF_04133,NF041162,COG1659	N/A	N/A	N/A	N/A
PHROG	UHGV-1496142_61	phrog_5824	63.8	2.9e-18	N/A	unknown function
eggNOG-mapper	UHGV-1496142_61	742767.HMPREF9456_03321	81.6	3.71e-16	N/A	N/A
structural_annotation	UHGV-1496142_67	PF07603	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1496142_68	693746.OBV_20200	53.5	0.00000613	N/A	N/A
COG	UHGV-1496142_69	COG4675	N/A	N/A	Phage tail collar domain	N/A
KOfam	UHGV-1496142_74	K03469	74.9	1.5e-21	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-1496142_74	phrog_531	78.3	8.7e-23	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1496142_74	UniRef90_A0A2E5IJZ2	85.9	8.26e-19	Ribonuclease H	N/A
eggNOG-mapper	UHGV-1496142_74	555779.Dthio_PD3035	71.6	0.0000000000000599	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	N/A
Pfam	UHGV-1496142_74	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-1496142_74	COG0328	N/A	N/A	Ribonuclease HI	N/A
PHROG	UHGV-1496142_75	phrog_19299	96.9	3.2e-29	terminase large subunit	head and packaging
UniRef90	UHGV-1496142_75	UniRef90_A0A415SRG6	389.0	0	DOD-type homing endonuclease domain-containing protein	N/A
eggNOG-mapper	UHGV-1496142_75	742727.HMPREF9447_04827	199.0	0	Terminase-like family	N/A
Pfam	UHGV-1496142_75	PF14528	N/A	N/A	LAGLIDADG-like domain	LAGLIDADG_3
COG	UHGV-1496142_75	COG5362	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1496142_75	PF05203,PF04466,PF20441,MF_04145,MF_01420,NF005852,TIGR01547,COG1372,COG5323	N/A	N/A	N/A	N/A
PHROG	UHGV-1496142_76	phrog_64	69.9	2.2e-20	portal protein	head and packaging
UniRef90	UHGV-1496142_76	UniRef90_UPI0007FB4340	271.0	0	phage portal protein	N/A
Pfam	UHGV-1496142_76	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1496142_76	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1496142_77	742727.HMPREF9447_04824	78.6	0.0000000000000214	N/A	N/A
structural_annotation	UHGV-1496142_77	PF06152,TIGR01641	N/A	N/A	N/A	N/A
PHROG	UHGV-1496142_78	phrog_6721	48.5	9.4e-24	N/A	unknown function
eggNOG-mapper	UHGV-1496142_78	1410661.JNKW01000001_gene838	67.0	0.0000000000651	N/A	N/A
structural_annotation	UHGV-1496142_78	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
KOfam	UHGV-1496142_81	K01520	138.6	4.00001e-41	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-1496142_81	phrog_135	127.5	6.8e-38	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1496142_81	UniRef90_UPI001CDC98C2	165.0	0	dUTP diphosphatase	N/A
eggNOG-mapper	UHGV-1496142_81	1187128.I2GUG7_9CAUD	152.0	4.2039e-45	dUTPase	N/A
Pfam	UHGV-1496142_81	PF00692	N/A	N/A	dUTPase	dUTPase
NCBIFam	UHGV-1496142_81	TIGR00576.1	N/A	N/A	dUTP diphosphatase	N/A
structural_annotation	UHGV-1496142_81	PF00692,MF_00116,TIGR00576,COG0756	N/A	N/A	N/A	N/A
KOfam	UHGV-1496142_84	K06919	47.7	0.00000000000016	K06919; putative DNA primase/helicase	N/A
PHROG	UHGV-1496142_84	phrog_864	190.6	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1496142_84	UniRef90_A0A7Z6S579	170.0	2.24208e-44	SF3 helicase domain-containing protein	N/A
eggNOG-mapper	UHGV-1496142_84	1492737.FEM08_23240	134.0	8.82e-32	D5 N terminal like	N/A
Pfam	UHGV-1496142_84	PF08706	N/A	N/A	D5 N terminal like	D5_N
Pfam	UHGV-1496142_84	PF19263	N/A	N/A	N/A	DUF5906
NCBIFam	UHGV-1496142_84	TIGR01613.1	N/A	N/A	phage/plasmid primase, P4 family	N/A
COG	UHGV-1496142_84	COG3378	N/A	N/A	DNA primase, phage- or plasmid-associated	N/A
structural_annotation	UHGV-1496142_84	PF05272,PF08706,TIGR01613,COG3378	N/A	N/A	N/A	N/A
KOfam	UHGV-1496142_89	K04763	86.3	4e-25	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-1496142_89	phrog_1	100.3	2.4e-29	integrase	integration and excision
UniRef90	UHGV-1496142_89	UniRef90_UPI00189E8AF3	187.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-1496142_89	742727.HMPREF9447_04803	174.0	0	Phage integrase family	N/A
Pfam	UHGV-1496142_89	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1496142_89	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1496142_89	PF00589,MF_02055,NF001399,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-1496142_92	K04763	84.8	1.2e-24	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-1496142_92	phrog_1	114.8	9.2e-34	integrase	integration and excision
UniRef90	UHGV-1496142_92	UniRef90_A0A349YJ39	320.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-1496142_92	1123277.KB893184_gene4029	170.0	0	Phage integrase SAM-like domain	N/A
Pfam	UHGV-1496142_92	PF17293	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_5
Pfam	UHGV-1496142_92	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1496142_92	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1496142_92	PF00589,PF13102,PF17293,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1496142	Yes	64,473	50	100	1