vOTU vOTU-084286

vOTU: vOTU-084286

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-084286
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00771 → vGENUS-06400 → vSUBGEN-28789 → vOTU-084286
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus → Limivicinus sp900549865
Host range breadth	Species
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-1441035
Biosample ID	N/A
Genome length (bp)	37,697 bps
CheckV completeness	93.84% (High-quality)
CDS count	68
CDS density	91.57%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus → Limivicinus sp900549865	Total connections	44	Host agreement	72.73
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 93.84)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1441035_1	phrog_14030	46.8	0.00000000000035	N/A	unknown function
eggNOG-mapper	UHGV-1441035_1	33035.JPJF01000093_gene2240	74.7	0.00000000000000361	NlpC/P60 family	N/A
COG	UHGV-1441035_1	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
PHROG	UHGV-1441035_2	phrog_355	61.4	1.2e-17	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1441035_2	UniRef90_A0A396KGT7	172.0	0	N/A	N/A
eggNOG-mapper	UHGV-1441035_2	97138.C820_00250	127.0	9.65e-37	N/A	N/A
Pfam	UHGV-1441035_2	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-1441035_2	PF14359,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-1441035_3	phrog_30034	116.4	2.7e-34	N/A	unknown function
UniRef90	UHGV-1441035_3	UniRef90_R6RWR8	153.0	2.38221e-44	Carbohydrate binding domain protein	N/A
eggNOG-mapper	UHGV-1441035_3	411460.RUMTOR_02099	136.0	5.08e-38	N/A	N/A
Pfam	UHGV-1441035_3	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
structural_annotation	UHGV-1441035_3	PF14600	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1441035_5	PF21582,NF038128	N/A	N/A	N/A	N/A
PHROG	UHGV-1441035_6	phrog_9534	119.0	4.8e-35	head protein	head and packaging
eggNOG-mapper	UHGV-1441035_6	1519439.JPJG01000037_gene946	92.4	3.02e-19	COG NOG18825 non supervised orthologous group	N/A
PHROG	UHGV-1441035_7	phrog_538	118.5	5.4e-35	minor tail protein	tail
UniRef90	UHGV-1441035_7	UniRef90_UPI001C113FEF	348.0	0	siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-1441035_7	931626.Awo_c30930	70.5	0.00000000012	Siphovirus ReqiPepy6 Gp37-like protein	N/A
Pfam	UHGV-1441035_7	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-1441035_7	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1441035_8	phrog_36410	63.8	1.7e-18	N/A	unknown function
UniRef90	UHGV-1441035_8	UniRef90_UPI001C0FCFFA	363.0	0	phage tail family protein	N/A
eggNOG-mapper	UHGV-1441035_8	1033737.CAEV01000029_gene285	110.0	9.59e-26	Phage tail protein	N/A
COG	UHGV-1441035_8	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1441035_8	PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1441035_9	phrog_23464	254.4	0	N/A	unknown function
eggNOG-mapper	UHGV-1441035_9	665950.HMPREF1025_02660	246.0	0	phage tail tape measure protein	N/A
COG	UHGV-1441035_9	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-1441035_9	PF20155,MF_04138	N/A	N/A	N/A	N/A
PHROG	UHGV-1441035_11	phrog_885	70.8	1.3e-20	major tail protein	tail
UniRef90	UHGV-1441035_11	UniRef90_A0A843J9F0	189.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-1441035_11	1504822.CCNO01000012_gene492	208.0	0	N/A	N/A
structural_annotation	UHGV-1441035_11	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1441035_12	PF11367	N/A	N/A	N/A	N/A
UniRef90	UHGV-1441035_13	UniRef90_A0A285PT57	58.9	0.00000000718	Phage head-tail joining protein	N/A
Pfam	UHGV-1441035_13	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-1441035_13	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-1441035_13	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1441035_15	phrog_283	293.0	0	major head protein	head and packaging
UniRef90	UHGV-1441035_15	UniRef90_UPI001F262C39	352.0	0	P22 coat protein	N/A
eggNOG-mapper	UHGV-1441035_15	1499683.CCFF01000014_gene3908	333.0	0	P22 coat protein - gene protein 5	N/A
Pfam	UHGV-1441035_15	PF11651	N/A	N/A	P22 coat protein - gene protein 5	P22_CoatProtein
structural_annotation	UHGV-1441035_15	PF11651,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-1441035_16	UniRef90_A0A174AAF6	73.6	0.000000000000564	Clp R domain-containing protein	N/A
structural_annotation	UHGV-1441035_16	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-1441035_17	phrog_5	70.5	2.9e-20	tail completion or Neck1 protein	connector
UniRef90	UHGV-1441035_17	UniRef90_A0A3A9EIF3	119.0	1.27e-31	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1441035_17	1123309.AQYB01000018_gene814	95.5	3.76e-23	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-1441035_17	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-1441035_17	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-1441035_17	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-1441035_19	phrog_115	101.4	4.2e-30	minor head protein	head and packaging
UniRef90	UHGV-1441035_19	UniRef90_A0A7X5E1T7	425.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-1441035_19	796940.HMPREF9628_01308	132.0	1.66e-30	Phage Mu protein F like protein	N/A
Pfam	UHGV-1441035_19	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-1441035_19	COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-1441035_20	phrog_64	171.1	0	portal protein	head and packaging
UniRef90	UHGV-1441035_20	UniRef90_A0A856HZB4	547.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1441035_20	1035196.HMPREF9998_01723	80.5	0.000000000000223	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1441035_20	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1441035_20	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-1441035_21	K06909	125.9	3.6e-37	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1441035_21	phrog_10250	181.6	0	N/A	unknown function
UniRef90	UHGV-1441035_21	UniRef90_UPI0002EF417D	458.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1441035_21	476272.RUMHYD_01756	340.0	0	N/A	N/A
Pfam	UHGV-1441035_21	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-1441035_21	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1441035_21	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1441035_21	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-1441035_22	K07474	106.6	4.4e-31	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-1441035_22	phrog_51	115.9	2.6e-34	terminase small subunit	head and packaging
UniRef90	UHGV-1441035_22	UniRef90_UPI001C8DFA18	125.0	2.13e-34	terminase small subunit	N/A
eggNOG-mapper	UHGV-1441035_22	1280692.AUJL01000027_gene2167	114.0	7.66e-31	Terminase small subunit	N/A
Pfam	UHGV-1441035_22	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-1441035_22	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1441035_22	PF03592,COG3728	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1441035_23	PF10922,MF_00839	N/A	N/A	N/A	N/A
KOfam	UHGV-1441035_24	K23779	52.7	0.0000000000000094	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
PHROG	UHGV-1441035_24	phrog_8	60.4	4.1e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-1441035_24	UniRef90_UPI00137B0E57	84.7	3.32e-20	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-1441035_24	760568.Desku_2499	63.9	0.000000000000959	sequence-specific DNA binding	N/A
Pfam	UHGV-1441035_24	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1441035_24	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1441035_24	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1441035_26	phrog_3584	165.8	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1441035_26	1226322.HMPREF1545_03841	266.0	0	N/A	N/A
structural_annotation	UHGV-1441035_26	PF01446,NF041486	N/A	N/A	N/A	N/A
KOfam	UHGV-1441035_30	K05925	60.1	4.8e-18	METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]	N/A
PHROG	UHGV-1441035_30	phrog_359	168.5	0	DNA methyltransferase	other
UniRef90	UHGV-1441035_30	UniRef90_A0A3D5I936	282.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-1441035_30	1158601.I585_02810	124.0	3.07e-33	MT-A70	N/A
PADLOC	UHGV-1441035_30	MTase_II_00048	157.7	0	Type II methyltransferase	RM
Pfam	UHGV-1441035_30	PF05063	N/A	N/A	MT-A70	MT-A70
COG	UHGV-1441035_30	COG4725	N/A	N/A	N6-adenosine-specific RNA methylase IME4	N/A
structural_annotation	UHGV-1441035_30	PF05063,MF_01872,NF010253,COG4725	N/A	N/A	N/A	N/A
KOfam	UHGV-1441035_33	K00390	103.1	2.4e-30	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-1441035_33	phrog_424	120.6	1e-35	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1441035_33	UniRef90_A0A1Y4LU27	361.0	0	Adenylyl-sulfate reductase	N/A
eggNOG-mapper	UHGV-1441035_33	411902.CLOBOL_06768	349.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
PADLOC	UHGV-1441035_33	BrxP_00001	68.8	5.4e-21	BrxP	BREX
Pfam	UHGV-1441035_33	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-1441035_33	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1441035_33	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
KOfam	UHGV-1441035_34	K00558	159.3	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1441035_34	phrog_363	241.9	0	DNA methyltransferase	other
UniRef90	UHGV-1441035_34	UniRef90_G4KRB8	345.0	0	Cytosine-specific methyltransferase	N/A
eggNOG-mapper	UHGV-1441035_34	693746.OBV_01900	345.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
PADLOC	UHGV-1441035_34	MTase_II_00058	122.3	1.5e-36	Type II methyltransferase	RM
Pfam	UHGV-1441035_34	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-1441035_34	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-1441035_34	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1441035_34	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1441035_36	PF01423,MF_00257,NF001963,COG1958	N/A	N/A	N/A	N/A
Pfam	UHGV-1441035_38	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
structural_annotation	UHGV-1441035_38	PF13384	N/A	N/A	N/A	N/A
UniRef90	UHGV-1441035_40	UniRef90_A0A6S6Y2I4	51.6	0.000000434	HTH_17 domain-containing protein	N/A
eggNOG-mapper	UHGV-1441035_40	1519439.JPJG01000054_gene2124	48.9	0.000000839	Helix-turn-helix domain	N/A
Pfam	UHGV-1441035_40	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-1441035_40	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
PHROG	UHGV-1441035_50	phrog_4709	90.6	7.8e-27	N/A	unknown function
eggNOG-mapper	UHGV-1441035_50	663278.Ethha_1834	95.5	4.26e-25	N/A	N/A
AcrCatalog	UHGV-1441035_50	cluster_3300	82.8	1.57e-24	NA	N/A
KOfam	UHGV-1441035_51	K22300	55.9	9e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1441035_51	phrog_8	47.0	0.00000000000036	transcriptional regulator	transcription regulation
UniRef90	UHGV-1441035_51	UniRef90_A0A1Q9J555	97.4	2.04e-23	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1441035_51	445972.ANACOL_03315	88.6	8.12e-21	N/A	N/A
Pfam	UHGV-1441035_51	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1441035_51	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1441035_51	PF12844,MF_02017,NF007257,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-1441035_53	UniRef90_A0A5A5U028	135.0	3.34e-35	SAP domain-containing protein	N/A
eggNOG-mapper	UHGV-1441035_53	1280696.ATVY01000034_gene3237	154.0	1.04999e-41	Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation	N/A
Pfam	UHGV-1441035_53	PF02037	N/A	N/A	SAP domain	SAP
Pfam	UHGV-1441035_54	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1441035_54	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1441035_54	PF12844	N/A	N/A	N/A	N/A
KOfam	UHGV-1441035_55	K14059	303.9	0	int; integrase	N/A
PHROG	UHGV-1441035_55	phrog_1	226.1	0	integrase	integration and excision
UniRef90	UHGV-1441035_55	UniRef90_A0A1C6J5B7	505.0	0	Tyrosine recombinase XerD	N/A
eggNOG-mapper	UHGV-1441035_55	877414.ATWA01000018_gene2094	389.0	0	Phage integrase family	N/A
Pfam	UHGV-1441035_55	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1441035_55	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1441035_55	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1441035_55	PF00589,PF02920,PF14659,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1441035_56	1226322.HMPREF1545_00079	103.0	3.47e-27	N/A	N/A
structural_annotation	UHGV-1441035_57	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-1441035_58	phrog_20016	200.2	0	N/A	unknown function
UniRef90	UHGV-1441035_58	UniRef90_A0A285PT46	206.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-1441035_58	1226322.HMPREF1545_00077	186.0	0	N/A	N/A
structural_annotation	UHGV-1441035_58	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-1441035_60	phrog_16490	137.7	8.50028e-42	N/A	unknown function
eggNOG-mapper	UHGV-1441035_60	658655.HMPREF0988_00917	127.0	6.45e-33	N/A	N/A
PHROG	UHGV-1441035_61	phrog_22984	70.6	1.2e-20	N/A	unknown function
PHROG	UHGV-1441035_62	phrog_21718	99.6	2.6e-29	N/A	unknown function
eggNOG-mapper	UHGV-1441035_62	397290.C810_05210	96.7	4.2e-23	N/A	N/A
PHROG	UHGV-1441035_63	phrog_3754	111.4	6.4e-33	N/A	unknown function
eggNOG-mapper	UHGV-1441035_63	476272.RUMHYD_01764	158.0	0	N/A	N/A
KOfam	UHGV-1441035_64	K07726	48.4	0.00000000000014	K07726; putative transcriptional regulator	N/A
eggNOG-mapper	UHGV-1441035_64	1410631.JHWZ01000002_gene1263	68.2	0.0000000000032	sequence-specific DNA binding	N/A
Pfam	UHGV-1441035_64	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1441035_64	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
PHROG	UHGV-1441035_67	phrog_199	69.0	5.1e-20	holin	lysis
UniRef90	UHGV-1441035_67	UniRef90_R5AT18	180.0	0	Toxin secretion/phage lysis holin	N/A
eggNOG-mapper	UHGV-1441035_67	742738.HMPREF9460_00365	156.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-1441035_67	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1441035_67	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-1441035_67	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-1441035_67	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-1441035_68	K21470	43.4	0.000000000004	ycbB; L,D-transpeptidase YcbB	N/A
PHROG	UHGV-1441035_68	phrog_1493	47.7	0.00000000000026	endolysin	lysis
UniRef90	UHGV-1441035_68	UniRef90_A0A316NTC6	91.7	5.6e-21	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-1441035_68	272134.KB731324_gene4812	67.8	0.00000000000249	Putative peptidoglycan binding domain	N/A
Pfam	UHGV-1441035_68	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-1441035_68	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1441035	Yes	37,697	57	94	1