vOTU vOTU-084318

vOTU: vOTU-084318

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-084318
Number of genomes	2
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-103
Taxonomy (UHGV)	vFAM-00010 → vSUBFAM-00261 → vGENUS-00170 → vSUBGEN-39677 → vOTU-084318
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-103
Host range breadth	Genus
Lifestyle	temperate (Evidence: geNomad)

Representative genome
Genome ID	UHGV-0108742
Biosample ID	N/A
Genome length (bp)	34,734 bps
CheckV completeness	99.70% (High-quality)
CDS count	49
CDS density	92.34%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-103	Total connections	316	Host agreement	98.73
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-103	Total connections	84	Host agreement	91.67

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.7)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0108742_1	K18908	201.4	0	mepA; multidrug efflux pump	N/A
PHROG	UHGV-0108742_1	phrog_6241	230.5	0	N/A	unknown function
UniRef90	UHGV-0108742_1	UniRef90_R5APW5	467.0	0	MATE efflux family protein	N/A
eggNOG-mapper	UHGV-0108742_1	585394.RHOM_13945	299.0	0	N/A	N/A
Pfam	UHGV-0108742_1	PF01554	N/A	N/A	MatE	MatE
NCBIFam	UHGV-0108742_1	TIGR00797.1	N/A	N/A	MATE family efflux transporter	N/A
COG	UHGV-0108742_1	COG0534	N/A	N/A	Na+-driven multidrug efflux pump, DinF/NorM/MATE family	N/A
PHROG	UHGV-0108742_2	phrog_1129	62.1	6.8e-18	holin	lysis
UniRef90	UHGV-0108742_2	UniRef90_A0A8J6J3M3	100.0	4.1e-26	Phage holin family protein	N/A
eggNOG-mapper	UHGV-0108742_2	665956.HMPREF1032_03272	96.7	3.64e-25	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0108742_2	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0108742_2	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0108742_3	phrog_4105	78.1	9.3e-23	N/A	unknown function
eggNOG-mapper	UHGV-0108742_3	592026.GCWU0000282_003290	82.4	4.77e-19	N/A	N/A
KOfam	UHGV-0108742_4	K01447	65.5	1.2e-18	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0108742_4	phrog_1794	145.5	5.10073e-43	amidase	lysis
UniRef90	UHGV-0108742_4	UniRef90_R5AZE6	297.0	0	N-acetylmuramoyl-L-alanine amidase family 2	N/A
eggNOG-mapper	UHGV-0108742_4	397288.C806_00777	209.0	0	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	N/A
Pfam	UHGV-0108742_4	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0108742_4	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0108742_4	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
KOfam	UHGV-0108742_5	K16617	50.9	0.00000000000001	COL13A; collagen type XIII alpha	N/A
PHROG	UHGV-0108742_5	phrog_11541	100.2	9.5e-30	N/A	unknown function
eggNOG-mapper	UHGV-0108742_5	1175629.AJTG01000006_gene514	117.0	8.65e-27	N/A	N/A
Pfam	UHGV-0108742_5	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
Pfam	UHGV-0108742_5	PF13472	N/A	N/A	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
structural_annotation	UHGV-0108742_6	PF00629,NF033675	N/A	N/A	N/A	N/A
PHROG	UHGV-0108742_8	phrog_6616	60.1	6.3e-18	tail protein	tail
structural_annotation	UHGV-0108742_9	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0108742_10	phrog_1535	116.9	0	tail length tape measure protein	tail
UniRef90	UHGV-0108742_10	UniRef90_A0A810PX76	104.0	1.31e-19	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0108742_10	1235797.C816_04182	196.0	0	SLT domain	N/A
COG	UHGV-0108742_10	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0108742_10	PF16789,TIGR02473	N/A	N/A	N/A	N/A
PHROG	UHGV-0108742_11	phrog_706	109.0	4.1e-32	N/A	unknown function
UniRef90	UHGV-0108742_11	UniRef90_UPI00164D7633	176.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0108742_11	693746.OBV_18170	167.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0108742_11	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0108742_11	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0108742_12	phrog_11299	98.3	8e-29	N/A	unknown function
eggNOG-mapper	UHGV-0108742_12	1449050.JNLE01000003_gene3883	67.4	0.00000000000375	N/A	N/A
structural_annotation	UHGV-0108742_12	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0108742_13	phrog_3099	87.5	1.7e-25	N/A	unknown function
eggNOG-mapper	UHGV-0108742_13	693746.OBV_18150	223.0	0	N/A	N/A
structural_annotation	UHGV-0108742_13	PF10772,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0108742_14	phrog_3266	66.0	5e-19	tail completion	connector
eggNOG-mapper	UHGV-0108742_14	476272.RUMHYD_01781	124.0	5.95e-34	N/A	N/A
structural_annotation	UHGV-0108742_14	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0108742_15	phrog_556	61.2	9e-18	minor head protein	head and packaging
UniRef90	UHGV-0108742_15	UniRef90_A0A1H7MNM8	119.0	1e-31	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0108742_15	476272.RUMHYD_01780	103.0	2.03e-26	N/A	N/A
Pfam	UHGV-0108742_15	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0108742_15	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0108742_16	phrog_3366	51.3	0.000000000000023	N/A	unknown function
structural_annotation	UHGV-0108742_16	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-0108742_17	phrog_541	69.3	5.1e-20	head-tail adaptor	connector
eggNOG-mapper	UHGV-0108742_17	33035.JPJF01000106_gene3131	73.9	0.0000000000000149	N/A	N/A
PHROG	UHGV-0108742_18	phrog_267	53.7	0.0000000000000029	major head protein	head and packaging
eggNOG-mapper	UHGV-0108742_18	1235799.C818_04223	159.0	4.2039e-44	N/A	N/A
structural_annotation	UHGV-0108742_18	PF11651,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0108742_19	phrog_194	42.0	0.000000000017	head scaffolding protein	head and packaging
UniRef90	UHGV-0108742_19	UniRef90_UPI001C0EBA51	125.0	1.34e-32	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0108742_19	1539298.JO41_08210	60.5	0.00000000901	Phage minor structural protein GP20	N/A
Pfam	UHGV-0108742_19	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0108742_19	PF06810	N/A	N/A	N/A	N/A
UniRef90	UHGV-0108742_20	UniRef90_UPI000C08D045	48.1	0.00000579	N/A	N/A
PHROG	UHGV-0108742_21	phrog_581	244.8	0	minor head protein	head and packaging
UniRef90	UHGV-0108742_21	UniRef90_A0A3D4T830	351.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0108742_21	476272.RUMHYD_01761	228.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0108742_21	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
Pfam	UHGV-0108742_21	PF21814	N/A	N/A	N/A	DUF6883
COG	UHGV-0108742_21	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0108742_21	PF06152,PF21814	N/A	N/A	N/A	N/A
PHROG	UHGV-0108742_22	phrog_533	210.8	0	portal protein	head and packaging
UniRef90	UHGV-0108742_22	UniRef90_A0A173TY48	345.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0108742_22	33035.JPJF01000106_gene3135	325.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-0108742_22	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0108742_23	phrog_1233	95.2	7.5e-28	N/A	unknown function
eggNOG-mapper	UHGV-0108742_23	1415774.U728_832	93.2	3.72e-23	N/A	N/A
structural_annotation	UHGV-0108742_23	PF13058	N/A	N/A	N/A	N/A
KOfam	UHGV-0108742_24	K06909	391.4	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0108742_24	phrog_3717	144.7	5.19882e-43	terminase large subunit	head and packaging
UniRef90	UHGV-0108742_24	UniRef90_A0A416S378	640.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0108742_24	33035.JPJF01000106_gene3136	599.0	0	Terminase small subunit	N/A
Pfam	UHGV-0108742_24	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
Pfam	UHGV-0108742_24	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0108742_24	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0108742_24	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0108742_24	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0108742_24	PF04466,PF17288,PF03592,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0108742_25	PF10922,MF_00839	N/A	N/A	N/A	N/A
PHROG	UHGV-0108742_26	phrog_36	59.2	8.9e-17	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0108742_26	428125.CLOLEP_01806	101.0	2.89e-25	N/A	N/A
Pfam	UHGV-0108742_26	PF07374	N/A	N/A	N/A	DUF1492
structural_annotation	UHGV-0108742_26	PF07374,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0108742_27	phrog_3136	117.2	3.6e-35	N/A	unknown function
UniRef90	UHGV-0108742_27	UniRef90_UPI001C26B029	123.0	1.11e-31	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0108742_27	97139.C824_00742	58.5	0.0000000238	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-0108742_27	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0108742_27	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-0108742_28	phrog_355	64.5	1.2e-18	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0108742_28	UniRef90_A0A1C6JA96	102.0	3.52e-25	Nucleoside 2-deoxyribosyltransferase	N/A
eggNOG-mapper	UHGV-0108742_28	1048834.TC41_1868	56.6	0.0000000329	N/A	N/A
Pfam	UHGV-0108742_28	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-0108742_28	PF14359,MF_03036,TIGR03646,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-0108742_29	phrog_15609	366.5	0	N/A	unknown function
UniRef90	UHGV-0108742_29	UniRef90_A0A7G9WGA3	133.0	1.57e-32	N/A	N/A
eggNOG-mapper	UHGV-0108742_29	1378168.N510_01841	122.0	1.25e-28	N/A	N/A
Pfam	UHGV-0108742_29	PF11300	N/A	N/A	N/A	DUF3102
COG	UHGV-0108742_29	COG2433	N/A	N/A	Possible nuclease of RNase H fold, RuvC/YqgF family	N/A
structural_annotation	UHGV-0108742_29	PF11300,PF07321,NF038070	N/A	N/A	N/A	N/A
PHROG	UHGV-0108742_30	phrog_8470	452.0	0	N/A	unknown function
UniRef90	UHGV-0108742_30	UniRef90_UPI001C1063FF	287.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0108742_30	1378168.N510_01842	229.0	0	PcfJ-like protein	N/A
Pfam	UHGV-0108742_30	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0108742_30	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0108742_31	phrog_38338	73.3	3.8e-21	N/A	unknown function
UniRef90	UHGV-0108742_31	UniRef90_UPI00137B3A8C	76.6	0.00000000000000349	Cas9 inhibitor AcrIIA9 family protein	N/A
eggNOG-mapper	UHGV-0108742_31	693746.OBV_25410	99.8	1.61e-25	N/A	N/A
KOfam	UHGV-0108742_32	K03700	88.6	8.8e-26	recU; recombination protein U	N/A
PHROG	UHGV-0108742_32	phrog_843	137.1	6.40001e-41	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0108742_32	UniRef90_A0A1H0W5Y9	164.0	0	Holliday junction resolvase RecU	N/A
eggNOG-mapper	UHGV-0108742_32	537013.CLOSTMETH_01720	150.0	3.16693e-43	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	N/A
Pfam	UHGV-0108742_32	PF03838	N/A	N/A	Recombination protein U	RecU
COG	UHGV-0108742_32	COG3331	N/A	N/A	Penicillin-binding protein-related factor A, putative recombinase	N/A
structural_annotation	UHGV-0108742_32	PF03838,MF_00130,NF002581,COG3331	N/A	N/A	N/A	N/A
PHROG	UHGV-0108742_33	phrog_3584	133.6	1.5e-39	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0108742_33	411470.RUMGNA_02047	137.0	4.08e-36	N/A	N/A
structural_annotation	UHGV-0108742_33	PF21578	N/A	N/A	N/A	N/A
KOfam	UHGV-0108742_36	K06284	114.0	8.6e-34	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	N/A
PHROG	UHGV-0108742_36	phrog_4681	100.2	7.8e-30	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0108742_36	UniRef90_A0A098MBW8	105.0	4.57e-28	AbrB family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0108742_36	268407.PWYN_12320	105.0	7.66e-29	AbrB family transcriptional regulator	N/A
Pfam	UHGV-0108742_36	PF04014	N/A	N/A	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
NCBIFam	UHGV-0108742_36	TIGR01439.1	N/A	N/A	transcriptional regulator, AbrB family	N/A
COG	UHGV-0108742_36	COG2002	N/A	N/A	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	N/A
structural_annotation	UHGV-0108742_36	PF15937,TIGR01439,NF004424,COG2002	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0108742_37	PF21291,TIGR03070,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0108742_38	phrog_585	42.6	0.000000000011	N/A	unknown function
Pfam	UHGV-0108742_38	PF10711	N/A	N/A	N/A	DUF2513
PHROG	UHGV-0108742_39	phrog_750	42.6	0.0000000000049	N/A	unknown function
structural_annotation	UHGV-0108742_39	PF13835,NF040858	N/A	N/A	N/A	N/A
UniRef90	UHGV-0108742_42	UniRef90_K1UM29	110.0	1.46e-28	Helix-turn-helix domain protein (Fragment)	N/A
eggNOG-mapper	UHGV-0108742_42	445972.ANACOL_03315	92.0	8.86e-23	N/A	N/A
COG	UHGV-0108742_42	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
KOfam	UHGV-0108742_44	K07729	57.9	2.5e-16	K07729; putative transcriptional regulator	N/A
UniRef90	UHGV-0108742_44	UniRef90_R5AVU4	91.7	3.94e-23	CI-like repressor	N/A
eggNOG-mapper	UHGV-0108742_44	1120971.AUCA01000073_gene2914	54.7	0.0000000032	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0108742_44	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0108742_44	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0108742_44	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0108742_45	K07448	132.4	3.6e-39	mrr; restriction system protein	N/A
PHROG	UHGV-0108742_45	phrog_19856	49.9	0.000000000000027	N/A	unknown function
UniRef90	UHGV-0108742_45	UniRef90_UPI001294DFE1	105.0	6.55e-23	restriction endonuclease	N/A
eggNOG-mapper	UHGV-0108742_45	1235790.C805_00010	148.0	1.31e-40	Restriction endonuclease	N/A
PADLOC	UHGV-0108742_45	ZorD1_00005	76.0	3.6e-22	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
Pfam	UHGV-0108742_45	PF04471	N/A	N/A	Restriction endonuclease	Mrr_cat
COG	UHGV-0108742_45	COG1787	N/A	N/A	Endonuclease, HJR/Mrr/RecB family	N/A
structural_annotation	UHGV-0108742_45	PF04471,MF_00722,NF040854,COG1787	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0108742_46	1262449.CP6013_2082	137.0	1.28e-39	N/A	N/A
PHROG	UHGV-0108742_48	phrog_11623	203.2	0	N/A	unknown function
UniRef90	UHGV-0108742_48	UniRef90_A0A7X8K2Z3	287.0	0	N/A	N/A
eggNOG-mapper	UHGV-0108742_48	1111121.HMPREF1247_1100	194.0	0	Cold shock	N/A
Pfam	UHGV-0108742_48	PF12873	N/A	N/A	N/A	DUF3825
COG	UHGV-0108742_48	COG1278	N/A	N/A	Cold shock protein, CspA family	N/A
structural_annotation	UHGV-0108742_48	PF12873	N/A	N/A	N/A	N/A
KOfam	UHGV-0108742_49	K14059	154.6	1.4013e-45	int; integrase	N/A
PHROG	UHGV-0108742_49	phrog_1	155.3	0	integrase	integration and excision
UniRef90	UHGV-0108742_49	UniRef90_A0A2Z4QB94	335.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0108742_49	626523.GCWU000342_00320	99.8	7.17e-21	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0108742_49	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0108742_49	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0108742_49	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0108742	Yes	34,734	56	100	1
UHGV-2116046	No	34,944	56	100	1