vOTU vOTU-084411

vOTU: vOTU-084411

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-084411
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00022 → vSUBFAM-02791 → vGENUS-03632 → vSUBGEN-25449 → vOTU-084411
Host lineage	Bacteria → Firmicutes_A → Clostridia → Tissierellales → Peptoniphilaceae → Parvimonas → Parvimonas micra
Host range breadth	Species
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-2108854
Biosample ID	N/A
Genome length (bp)	30,749 bps
CheckV completeness	99.90% (High-quality)
CDS count	51
CDS density	92.56%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Tissierellales → Peptoniphilaceae → Parvimonas → Parvimonas micra	Total connections	23	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Tissierellales → Peptoniphilaceae → Parvimonas → Parvimonas micra	Total connections	8	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-2108854_1	K14059	120.7	2.3e-35	int; integrase	N/A
PHROG	UHGV-2108854_1	phrog_1	151.9	5.60519e-45	integrase	integration and excision
UniRef90	UHGV-2108854_1	UniRef90_A8SKK0	693.0	0	Site-specific recombinase, phage integrase family	N/A
eggNOG-mapper	UHGV-2108854_1	411465.PEPMIC_00705	693.0	0	Phage integrase family	N/A
Pfam	UHGV-2108854_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-2108854_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-2108854_1	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-2108854_2	phrog_7974	68.2	1.2e-19	N/A	unknown function
UniRef90	UHGV-2108854_2	UniRef90_A8SKK1	269.0	0	TM2 domain protein	N/A
eggNOG-mapper	UHGV-2108854_2	411465.PEPMIC_00706	269.0	0	N/A	N/A
Pfam	UHGV-2108854_2	PF14020	N/A	N/A	N/A	DUF4236
Pfam	UHGV-2108854_2	PF05154	N/A	N/A	TM2 domain	TM2
COG	UHGV-2108854_2	COG0457	N/A	N/A	Tetratricopeptide (TPR) repeat	N/A
structural_annotation	UHGV-2108854_2	PF14020,PF05154	N/A	N/A	N/A	N/A
PHROG	UHGV-2108854_3	phrog_87	47.2	0.00000000000028	metallo-protease	other
UniRef90	UHGV-2108854_3	UniRef90_UPI00124C33E6	66.6	0.0000000000536	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-2108854_3	411465.PEPMIC_00707	290.0	0	Zn peptidase	N/A
COG	UHGV-2108854_3	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-2108854_3	PF06114,COG2856	N/A	N/A	N/A	N/A
PHROG	UHGV-2108854_4	phrog_2158	202.3	0	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-2108854_4	UniRef90_UPI00092FED43	243.0	0	Abi family protein	N/A
eggNOG-mapper	UHGV-2108854_4	888055.HMPREF9015_01723	213.0	0	N/A	N/A
PADLOC	UHGV-2108854_4	AbiD	136.4	4.6e-40	AbiD	Abi
Pfam	UHGV-2108854_4	PF07751	N/A	N/A	Abi-like protein	Abi_2
COG	UHGV-2108854_4	COG4823	N/A	N/A	Abortive infection bacteriophage resistance protein	N/A
structural_annotation	UHGV-2108854_4	PF07751,COG4823	N/A	N/A	N/A	N/A
KOfam	UHGV-2108854_5	K22300	58.2	2.1e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-2108854_5	phrog_8	65.9	9e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-2108854_5	UniRef90_A8SKK6	119.0	1.68e-32	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-2108854_5	411465.PEPMIC_00709	119.0	2.83e-33	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-2108854_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2108854_5	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-2108854_5	PF12844,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-2108854_6	UniRef90_UPI00070FAD0B	51.6	0.000000588	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-2108854_6	558169.AGAV01000008_gene736	48.9	0.000000901	N/A	N/A
structural_annotation	UHGV-2108854_6	PF05339,NF041951,COG1513	N/A	N/A	N/A	N/A
PHROG	UHGV-2108854_10	phrog_585	91.8	7.3e-27	N/A	unknown function
UniRef90	UHGV-2108854_10	UniRef90_UPI001C3E7387	100.0	6.35e-25	N/A	N/A
eggNOG-mapper	UHGV-2108854_10	411465.PEPMIC_00712	245.0	0	N/A	N/A
Pfam	UHGV-2108854_10	PF10711	N/A	N/A	N/A	DUF2513
structural_annotation	UHGV-2108854_10	PF10711,TIGR04176,COG1695	N/A	N/A	N/A	N/A
PHROG	UHGV-2108854_11	phrog_6058	65.0	8.1e-19	N/A	unknown function
UniRef90	UHGV-2108854_11	UniRef90_UPI000D0EB5B4	55.1	0.0000000156	DNA-binding protein	N/A
eggNOG-mapper	UHGV-2108854_11	469616.FMAG_02049	52.4	0.0000000324	Helix-turn-helix domain	N/A
structural_annotation	UHGV-2108854_11	PF12728,TIGR01764	N/A	N/A	N/A	N/A
KOfam	UHGV-2108854_16	K03111	132.4	5.3e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-2108854_16	phrog_44	128.1	6.7e-38	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2108854_16	UniRef90_A0A3B7DG27	270.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-2108854_16	411465.PEPMIC_01530	232.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-2108854_16	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-2108854_16	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-2108854_16	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-2108854_16	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-2108854_16	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-2108854_17	phrog_2044	94.9	4.5e-28	RNA polymerase beta subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2108854_17	UniRef90_K6E3Q5	75.9	1.54e-16	N/A	N/A
eggNOG-mapper	UHGV-2108854_17	1134413.ANNK01000054_gene2223	80.9	2.7e-19	N/A	N/A
structural_annotation	UHGV-2108854_17	MF_00337,NF010671,COG1722	N/A	N/A	N/A	N/A
PHROG	UHGV-2108854_18	phrog_1891	197.7	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2108854_18	UniRef90_A0A134AEK5	317.0	0	HNHc domain-containing protein	N/A
eggNOG-mapper	UHGV-2108854_18	796940.HMPREF9628_00161	108.0	1.64e-26	HNH endonuclease	N/A
Pfam	UHGV-2108854_18	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-2108854_18	PF13392	N/A	N/A	N/A	N/A
KOfam	UHGV-2108854_19	K07317	54.5	0.0000000000000014	K07317; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-2108854_19	phrog_6380	211.1	0	DNA methyltransferase	other
UniRef90	UHGV-2108854_19	UniRef90_A8SKM0	429.0	0	N-6 DNA Methylase	N/A
eggNOG-mapper	UHGV-2108854_19	411465.PEPMIC_00720	429.0	0	COG0286 Type I restriction-modification system methyltransferase subunit	N/A
Pfam	UHGV-2108854_19	PF02384	N/A	N/A	N-6 DNA Methylase	N6_Mtase
COG	UHGV-2108854_19	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-2108854_19	PF02384,MF_01872,TIGR00497,COG0286	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2108854_20	PF19005	N/A	N/A	N/A	N/A
PHROG	UHGV-2108854_22	phrog_3584	262.3	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-2108854_22	411465.PEPMIC_00724	405.0	0	N/A	N/A
structural_annotation	UHGV-2108854_22	PF21578	N/A	N/A	N/A	N/A
KOfam	UHGV-2108854_24	K03700	86.0	6e-25	recU; recombination protein U	N/A
PHROG	UHGV-2108854_24	phrog_843	139.9	1.10002e-41	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2108854_24	UniRef90_A0A3B7DGH2	302.0	0	Holliday junction resolvase RecU	N/A
eggNOG-mapper	UHGV-2108854_24	411465.PEPMIC_00727	266.0	0	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	N/A
Pfam	UHGV-2108854_24	PF03838	N/A	N/A	Recombination protein U	RecU
COG	UHGV-2108854_24	COG3331	N/A	N/A	Penicillin-binding protein-related factor A, putative recombinase	N/A
structural_annotation	UHGV-2108854_24	PF03838,MF_00130,NF002581,COG3331	N/A	N/A	N/A	N/A
PHROG	UHGV-2108854_26	phrog_36	56.0	9.4e-16	transcriptional regulator	transcription regulation
structural_annotation	UHGV-2108854_26	PF07374,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-2108854_27	phrog_119	44.8	0.0000000000016	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2108854_27	UniRef90_UPI001BAFAC45	160.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-2108854_27	411465.PEPMIC_00730	214.0	0	HNH nucleases	N/A
COG	UHGV-2108854_27	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-2108854_28	phrog_1066	93.2	2.1e-27	N/A	unknown function
UniRef90	UHGV-2108854_28	UniRef90_A0A7X8WV97	98.2	4.75e-24	N/A	N/A
eggNOG-mapper	UHGV-2108854_28	411465.PEPMIC_00731	218.0	0	N/A	N/A
structural_annotation	UHGV-2108854_28	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-2108854_29	phrog_9	374.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-2108854_29	UniRef90_A8SKN5	1133.0	0	Putative phage terminase, large subunit	N/A
eggNOG-mapper	UHGV-2108854_29	411465.PEPMIC_00732	1133.0	0	large subunit	N/A
Pfam	UHGV-2108854_29	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-2108854_29	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-2108854_29	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-2108854_29	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-2108854_30	phrog_12	92.4	4e-27	portal protein	head and packaging
UniRef90	UHGV-2108854_30	UniRef90_UPI001BAEE0FF	499.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-2108854_30	411465.PEPMIC_00733	771.0	0	Phage portal protein	N/A
Pfam	UHGV-2108854_30	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-2108854_30	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-2108854_30	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-2108854_31	K06904	92.1	8.6e-27	N/A	N/A
PHROG	UHGV-2108854_31	phrog_80	116.7	3.2e-34	head maturation protease	head and packaging
UniRef90	UHGV-2108854_31	UniRef90_A8SKN7	374.0	0	Phage prohead protease, HK97 family	N/A
eggNOG-mapper	UHGV-2108854_31	411465.PEPMIC_00734	374.0	0	N/A	N/A
Pfam	UHGV-2108854_31	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-2108854_31	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-2108854_31	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-2108854_31	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-2108854_32	phrog_10	125.2	6.7e-37	major head protein	head and packaging
UniRef90	UHGV-2108854_32	UniRef90_A8SKN8	685.0	0	Phage major capsid protein, HK97 family	N/A
eggNOG-mapper	UHGV-2108854_32	411465.PEPMIC_00735	685.0	0	Phage capsid family	N/A
Pfam	UHGV-2108854_32	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-2108854_32	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-2108854_32	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-2108854_32	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-2108854_34	phrog_5223	85.5	3.5e-25	neck protein	connector
UniRef90	UHGV-2108854_34	UniRef90_A8SKP1	174.0	0	Putative phage DNA packaging protein	N/A
eggNOG-mapper	UHGV-2108854_34	411465.PEPMIC_00737	174.0	0	N/A	N/A
NCBIFam	UHGV-2108854_34	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-2108854_34	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-2108854_35	phrog_1951	54.6	0.0000000000000017	head-tail adaptor	connector
UniRef90	UHGV-2108854_35	UniRef90_A8SKP2	195.0	0	Putative phage head-tail adaptor	N/A
eggNOG-mapper	UHGV-2108854_35	411465.PEPMIC_00738	195.0	0	N/A	N/A
NCBIFam	UHGV-2108854_35	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
UniRef90	UHGV-2108854_36	UniRef90_A0A1T5AM00	110.0	6.94e-28	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-2108854_36	411465.PEPMIC_00739	310.0	0	N/A	N/A
structural_annotation	UHGV-2108854_36	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-2108854_37	phrog_957	49.7	0.000000000000056	head protein	head and packaging
eggNOG-mapper	UHGV-2108854_37	411465.PEPMIC_00740	236.0	0	N/A	N/A
structural_annotation	UHGV-2108854_37	PF11367,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-2108854_38	phrog_885	193.5	0	major tail protein	tail
UniRef90	UHGV-2108854_38	UniRef90_A0A3D3W9F4	201.0	0	CBM_X2 domain-containing protein	N/A
eggNOG-mapper	UHGV-2108854_38	411465.PEPMIC_00741	386.0	0	N/A	N/A
structural_annotation	UHGV-2108854_38	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2108854_39	411465.PEPMIC_00742	188.0	0	N/A	N/A
PHROG	UHGV-2108854_41	phrog_8462	178.5	0	tail length tape measure protein	tail
UniRef90	UHGV-2108854_41	UniRef90_A8SKQ0	851.0	0	TMP repeat protein	N/A
eggNOG-mapper	UHGV-2108854_41	411465.PEPMIC_00744	851.0	0	Phage tail tape measure protein, TP901 family	N/A
COG	UHGV-2108854_41	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-2108854_41	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-2108854_42	phrog_33	56.0	5.5e-16	distal tail protein Dit	tail
UniRef90	UHGV-2108854_42	UniRef90_A8SKQ1	396.0	0	Putative phage tail component domain protein	N/A
eggNOG-mapper	UHGV-2108854_42	411465.PEPMIC_00745	396.0	0	N/A	N/A
Pfam	UHGV-2108854_42	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
structural_annotation	UHGV-2108854_42	PF05709,PF02408,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-2108854_43	phrog_3558	441.9	0	tail protein	tail
UniRef90	UHGV-2108854_43	UniRef90_A8SKQ2	979.0	0	Phage minor structural protein, N-terminal domain protein	N/A
eggNOG-mapper	UHGV-2108854_43	411465.PEPMIC_00746	979.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-2108854_43	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
COG	UHGV-2108854_43	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-2108854_43	PF06605,PF21683,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-2108854_44	phrog_372	232.8	0	tail protein	tail
UniRef90	UHGV-2108854_44	UniRef90_UPI000B8B5168	151.0	1.97e-35	N/A	N/A
eggNOG-mapper	UHGV-2108854_44	411465.PEPMIC_00747	1097.0	0	the current gene model (or a revised gene model) may contain a frame shift	N/A
COG	UHGV-2108854_44	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-2108854_44	PF05895,MF_04116,NF010681,COG3291	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2108854_45	PF11314,PF14600,PF02839	N/A	N/A	N/A	N/A
PHROG	UHGV-2108854_46	phrog_4105	55.9	8.3e-16	N/A	unknown function
eggNOG-mapper	UHGV-2108854_46	1336234.JAGN01000004_gene511	52.0	0.00000048	N/A	N/A
PHROG	UHGV-2108854_47	phrog_443	49.0	0.00000000000017	holin	lysis
UniRef90	UHGV-2108854_47	UniRef90_UPI00123B6218	119.0	4.43e-34	holin	N/A
eggNOG-mapper	UHGV-2108854_47	1469948.JPNB01000002_gene3855	81.6	8.66e-20	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-2108854_47	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-2108854_47	PF16945	N/A	N/A	N/A	N/A
KOfam	UHGV-2108854_48	K01447	86.4	4.8e-25	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-2108854_48	phrog_3088	148.6	4.90454e-44	amidase	lysis
UniRef90	UHGV-2108854_48	UniRef90_A8SKR0	580.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-2108854_48	411465.PEPMIC_00752	580.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-2108854_48	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-2108854_48	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
PHROG	UHGV-2108854_49	phrog_2277	40.7	0.000000000034	N/A	unknown function
eggNOG-mapper	UHGV-2108854_49	411465.PEPMIC_00753	293.0	0	N/A	N/A
PHROG	UHGV-2108854_51	phrog_990	90.3	1.9e-26	metal-dependent phosphohydrolase	other
UniRef90	UHGV-2108854_51	UniRef90_A0A0B4RZV1	264.0	0	GTP pyrophosphokinase	N/A
eggNOG-mapper	UHGV-2108854_51	411465.PEPMIC_00507	252.0	0	N/A	N/A
COG	UHGV-2108854_51	COG0317	N/A	N/A	(p)ppGpp synthase/hydrolase, HD superfamily	N/A
structural_annotation	UHGV-2108854_51	PF13328	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-2108854	Yes	30,749	28	100	1