vOTU vOTU-084437

vOTU: vOTU-084437

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-084437
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00134 → vGENUS-00111 → vSUBGEN-00561 → vOTU-084437
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1501846
Biosample ID	SAMEA3664584
Genome length (bp)	35,315 bps
CheckV completeness	99.90% (High-quality)
CDS count	46
CDS density	89.04%
tRNA count	3
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	2528	Host agreement	87.1
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	102	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1501846_4	K01447	59.0	1e-16	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1501846_4	phrog_20388	305.9	0	endolysin	lysis
UniRef90	UHGV-1501846_4	UniRef90_A0A374N1L8	550.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-1501846_4	1203606.HMPREF1526_00253	315.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-1501846_4	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-1501846_4	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-1501846_4	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-1501846_4	PF01510,PF01476,PF15591,MF_02014,MF_04111,MF_01354,NF008758,NF010723,TIGR00405,COG3023,COG5004,COG2139	N/A	N/A	N/A	N/A
PHROG	UHGV-1501846_5	phrog_199	75.7	5.2e-22	holin	lysis
UniRef90	UHGV-1501846_5	UniRef90_A0A2N0ULW7	273.0	0	Holin	N/A
eggNOG-mapper	UHGV-1501846_5	1160721.RBI_I01565	143.0	8.72028e-42	Bacteriophage holin family	N/A
Pfam	UHGV-1501846_5	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1501846_5	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-1501846_5	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-1501846_5	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
UniRef90	UHGV-1501846_7	UniRef90_A0A374N9Y2	208.0	0	N/A	N/A
structural_annotation	UHGV-1501846_7	PF10651,PF08931,TIGR02268	N/A	N/A	N/A	N/A
PHROG	UHGV-1501846_8	phrog_1067	86.9	3.5e-26	minor head protein	head and packaging
UniRef90	UHGV-1501846_8	UniRef90_A0A1G5CPD2	146.0	1.47e-36	Phage minor structural protein, N-terminal region	N/A
NCBIFam	UHGV-1501846_8	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1501846_8	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1501846_8	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1501846_9	phrog_33	83.4	4.4e-24	distal tail protein Dit	tail
UniRef90	UHGV-1501846_9	UniRef90_A0A1G5CPA2	137.0	1.1e-35	Phage-related protein	N/A
eggNOG-mapper	UHGV-1501846_9	1160721.RBI_I01575	87.8	6.9e-18	Phage tail protein	N/A
COG	UHGV-1501846_9	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1501846_9	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-1501846_10	K20478	67.0	4e-20	GOLGB1; golgin subfamily B member 1	N/A
PHROG	UHGV-1501846_10	phrog_1272	286.0	0	tail length tape measure protein	tail
UniRef90	UHGV-1501846_10	UniRef90_A0A412ULX0	1356.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-1501846_10	588581.Cpap_1264	262.0	0	Tail tape measure protein, TP901 family	N/A
Pfam	UHGV-1501846_10	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-1501846_10	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-1501846_10	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1501846_11	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-1501846_12	phrog_88	73.0	3.7e-21	major tail protein	tail
eggNOG-mapper	UHGV-1501846_12	1321782.HMPREF1986_01362	65.1	0.000000000263	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-1501846_12	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1501846_12	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
UniRef90	UHGV-1501846_13	UniRef90_UPI000E5564A4	270.0	0	HK97 gp10 family phage protein	N/A
Pfam	UHGV-1501846_13	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-1501846_13	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1501846_14	272623.L59277	52.4	0.000000302	N/A	N/A
structural_annotation	UHGV-1501846_14	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
PHROG	UHGV-1501846_15	phrog_19734	72.8	3.9e-21	N/A	unknown function
eggNOG-mapper	UHGV-1501846_15	86416.Clopa_0343	59.3	0.000000000888	N/A	N/A
NCBIFam	UHGV-1501846_15	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-1501846_15	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1501846_16	phrog_749	54.9	0.0000000000000014	N/A	unknown function
UniRef90	UHGV-1501846_16	UniRef90_A0A1G5CMX8	107.0	2.14e-28	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-1501846_16	1211817.CCAT010000053_gene2133	57.0	0.00000000329	N/A	N/A
PHROG	UHGV-1501846_17	phrog_10	126.2	2.9e-37	major head protein	head and packaging
UniRef90	UHGV-1501846_17	UniRef90_A0A412ULW9	718.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1501846_17	1211817.CCAT010000053_gene2132	327.0	0	Phage capsid family	N/A
Pfam	UHGV-1501846_17	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1501846_17	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1501846_17	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1501846_17	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-1501846_18	K01358	142.1	4.90034e-42	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1501846_18	phrog_94	215.1	0	head maturation protease	head and packaging
UniRef90	UHGV-1501846_18	UniRef90_A0A412ULU1	402.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-1501846_18	86416.Clopa_0340	171.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-1501846_18	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1501846_18	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1501846_18	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1501846_19	phrog_12	93.9	1.3e-27	portal protein	head and packaging
UniRef90	UHGV-1501846_19	UniRef90_A0A412ULV9	732.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1501846_19	1415774.U728_1254	262.0	0	Phage portal protein	N/A
Pfam	UHGV-1501846_19	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-1501846_19	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-1501846_19	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1501846_19	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1501846_20	phrog_9	302.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-1501846_20	UniRef90_A0A412UM03	1024.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-1501846_20	86416.Clopa_0337	631.0	0	Phage Terminase	N/A
Pfam	UHGV-1501846_20	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1501846_20	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1501846_20	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1501846_20	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1501846_21	phrog_5110	83.5	1.6e-24	terminase small subunit	head and packaging
UniRef90	UHGV-1501846_21	UniRef90_A0A4U7JDP0	112.0	2.48e-30	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-1501846_21	1211817.CCAT010000053_gene2128	99.0	1.27e-25	N/A	N/A
Pfam	UHGV-1501846_21	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-1501846_21	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-1501846_22	phrog_119	69.5	4.7e-20	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1501846_22	UniRef90_A0A412ULY9	219.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1501846_22	1158607.UAU_01026	102.0	5.07e-27	HNH endonuclease	N/A
Pfam	UHGV-1501846_22	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1501846_22	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
eggNOG-mapper	UHGV-1501846_23	431943.CKL_4074	52.0	0.00000166	N/A	N/A
structural_annotation	UHGV-1501846_23	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-1501846_24	phrog_3584	146.2	2.20004e-43	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1501846_24	1235800.C819_00515	70.5	0.0000000000134	N/A	N/A
structural_annotation	UHGV-1501846_24	PF21578,NF041486	N/A	N/A	N/A	N/A
PHROG	UHGV-1501846_27	phrog_824	145.4	1.59748e-43	N/A	unknown function
UniRef90	UHGV-1501846_27	UniRef90_A0A3D3D6C6	242.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-1501846_27	397288.C806_00096	154.0	0	VRR_NUC	N/A
Pfam	UHGV-1501846_27	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-1501846_27	PF08774	N/A	N/A	N/A	N/A
PHROG	UHGV-1501846_28	phrog_24518	84.8	8.6e-25	N/A	unknown function
eggNOG-mapper	UHGV-1501846_28	1519439.JPJG01000077_gene922	105.0	1.35e-25	N/A	N/A
KOfam	UHGV-1501846_29	K18830	53.6	0.0000000000000053	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1501846_29	phrog_8	61.8	1.6e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-1501846_29	UniRef90_A0A374N9T4	97.8	1.37e-25	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1501846_29	935845.JADQ01000015_gene3206	72.4	0.00000000000000234	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-1501846_29	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1501846_29	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1501846_29	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1501846_30	K04763	205.1	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-1501846_30	phrog_1	162.8	0	integrase	integration and excision
UniRef90	UHGV-1501846_30	UniRef90_UPI001B3C6404	384.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-1501846_30	1235793.C809_01951	223.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-1501846_30	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-1501846_30	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1501846_30	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1501846_30	PF00589,PF13495,MF_01808,TIGR02224,COG4973	N/A	N/A	N/A	N/A
PHROG	UHGV-1501846_31	phrog_323	78.0	2.3e-25	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1501846_31	UniRef90_UPI001C01CFF8	295.0	0	SANT/Myb domain-containing protein	N/A
eggNOG-mapper	UHGV-1501846_31	394503.Ccel_3305	334.0	0	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	N/A
dbAPIS	UHGV-1501846_31	APIS006	N/A	N/A	Trigger programmed cell death (PCD) by P4 prophage.	N/A
structural_annotation	UHGV-1501846_31	PF11112,NF040595	N/A	N/A	N/A	N/A
KOfam	UHGV-1501846_32	K03427	45.2	0.000000000001	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	N/A
PHROG	UHGV-1501846_32	phrog_5696	221.7	0	N/A	unknown function
UniRef90	UHGV-1501846_32	UniRef90_UPI001B3C9C54	253.0	0	N-6 DNA methylase	N/A
eggNOG-mapper	UHGV-1501846_32	1235802.C823_05701	149.0	1.07003e-41	N-6 DNA Methylase	N/A
Pfam	UHGV-1501846_32	PF02384	N/A	N/A	N-6 DNA Methylase	N6_Mtase
COG	UHGV-1501846_32	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-1501846_32	COG0286	N/A	N/A	N/A	N/A
KOfam	UHGV-1501846_33	K03497	156.6	0	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-1501846_33	phrog_6218	245.5	0	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1501846_33	UniRef90_A0A3D3D7T1	788.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-1501846_33	1160721.RBI_I01596	234.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-1501846_33	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
NCBIFam	UHGV-1501846_33	TIGR00180.1	N/A	N/A	ParB/RepB/Spo0J family partition protein	N/A
COG	UHGV-1501846_33	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-1501846_33	PF18579,MF_02015,TIGR00180,COG1475	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1501846_35	COG1862	N/A	N/A	N/A	N/A
PHROG	UHGV-1501846_36	phrog_6058	41.9	0.000000000011	N/A	unknown function
eggNOG-mapper	UHGV-1501846_36	1260356.D920_00020	48.1	0.00000908	N/A	N/A
structural_annotation	UHGV-1501846_36	NF033787	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1501846_37	PF11614,TIGR02588,COG2847	N/A	N/A	N/A	N/A
UniRef90	UHGV-1501846_39	UniRef90_UPI000E4DC4DA	137.0	8.02e-39	helix-turn-helix domain-containing protein	N/A
structural_annotation	UHGV-1501846_39	PF15597	N/A	N/A	N/A	N/A
KOfam	UHGV-1501846_40	K00390	92.9	3.1e-27	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-1501846_40	phrog_424	120.8	9.9e-36	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1501846_40	UniRef90_UPI001C034617	596.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-1501846_40	1408437.JNJN01000032_gene2312	335.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-1501846_40	BrxP_00001	75.9	3.2e-22	BrxP	BREX
Pfam	UHGV-1501846_40	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-1501846_40	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1501846_40	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
UniRef90	UHGV-1501846_42	UniRef90_UPI001494A832	48.9	0.00000401	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-1501846_42	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-1501846_42	PF05339,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-1501846_43	UniRef90_A0A373XLN2	277.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1501846_43	1235793.C809_00679	99.0	5.83e-25	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1501846_43	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-1501846_43	PF05339,NF007257,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-1501846_44	phrog_1914	146.6	1.30321e-43	N/A	unknown function
UniRef90	UHGV-1501846_44	UniRef90_A0A374NDM7	336.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-1501846_44	1160721.RBI_I01604	171.0	0	N/A	N/A
Pfam	UHGV-1501846_44	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-1501846_44	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-1501846_44	PF06114,COG2856	N/A	N/A	N/A	N/A
UniRef90	UHGV-1501846_45	UniRef90_UPI000E52DA24	379.0	0	zinc ribbon domain-containing protein	N/A
Pfam	UHGV-1501846_45	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
structural_annotation	UHGV-1501846_45	PF18933,PF02883,MF_02248,NF008627,COG5435,COG2847	N/A	N/A	N/A	N/A
KOfam	UHGV-1501846_46	K14059	100.6	2.2e-29	int; integrase	N/A
PHROG	UHGV-1501846_46	phrog_1	119.2	4.3e-35	integrase	integration and excision
UniRef90	UHGV-1501846_46	UniRef90_A0A1G5CL52	806.0	0	Phage integrase family protein	N/A
eggNOG-mapper	UHGV-1501846_46	693746.OBV_41260	189.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1501846_46	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1501846_46	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1501846_46	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1501846	Yes	35,315	39	100	1