vOTU vOTU-084525

vOTU: vOTU-084525

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-084525
Number of genomes	4
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00213 → vGENUS-00391 → vSUBGEN-37896 → vOTU-084525
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0379318
Biosample ID	SAMN06164830
Genome length (bp)	42,038 bps
CheckV completeness	98.52% (High-quality)
CDS count	62
CDS density	91.67%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83	Total connections	107	Host agreement	92.52
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 98.52)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0379318_1	phrog_27197	72.9	1.4e-21	N/A	unknown function
eggNOG-mapper	UHGV-0379318_1	767434.Fraau_1460	53.5	0.000000938	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0379318_1	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
UniRef90	UHGV-0379318_2	UniRef90_A0A8D9UH91	317.0	0	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0379318_2	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
structural_annotation	UHGV-0379318_2	PF01381,PF21715,NF041951,TIGR04176,COG1476,COG1654	N/A	N/A	N/A	N/A
PHROG	UHGV-0379318_4	phrog_253	85.2	8.8e-25	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0379318_4	UniRef90_A0A8D9PDS3	316.0	0	Resistance protein	N/A
eggNOG-mapper	UHGV-0379318_4	748224.HMPREF9436_03356	106.0	6.52e-27	Siphovirus Gp157	N/A
Pfam	UHGV-0379318_4	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0379318_4	PF05565	N/A	N/A	N/A	N/A
PHROG	UHGV-0379318_5	phrog_7838	143.8	1.19951e-42	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0379318_5	UniRef90_A0A8D9UGW3	431.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-0379318_5	742767.HMPREF9456_02052	190.0	0	N/A	N/A
structural_annotation	UHGV-0379318_5	PF04098,TIGR00607,COG4380	N/A	N/A	N/A	N/A
PHROG	UHGV-0379318_6	phrog_1389	80.1	2.4e-23	N/A	unknown function
eggNOG-mapper	UHGV-0379318_6	1347392.CCEZ01000060_gene3269	113.0	3.1e-31	N/A	N/A
structural_annotation	UHGV-0379318_6	PF11056,TIGR04376,COG1842	N/A	N/A	N/A	N/A
PHROG	UHGV-0379318_8	phrog_7566	96.3	1.8e-28	N/A	unknown function
UniRef90	UHGV-0379318_8	UniRef90_A0A8D9UHC0	192.0	0	Recombination enhancement function protein nuclease	N/A
eggNOG-mapper	UHGV-0379318_8	693746.OBV_24070	123.0	1.91e-35	N/A	N/A
PHROG	UHGV-0379318_9	phrog_7545	58.5	1.8e-16	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0379318_9	UniRef90_UPI0013794BCD	243.0	0	HNH endonuclease	N/A
Pfam	UHGV-0379318_9	PF13392	N/A	N/A	HNH endonuclease	HNH_3
Pfam	UHGV-0379318_9	PF02796	N/A	N/A	Helix-turn-helix domain of resolvase	HTH_7
KOfam	UHGV-0379318_10	K03111	123.1	3.8e-36	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0379318_10	phrog_44	115.5	5.4e-34	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0379318_10	UniRef90_A0A8D9PDS7	253.0	0	Single strand binding protein	N/A
eggNOG-mapper	UHGV-0379318_10	1203606.HMPREF1526_01880	113.0	2.61e-30	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0379318_10	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0379318_10	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0379318_10	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0379318_10	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0379318_10	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0379318_12	phrog_15768	77.6	1.2e-23	N/A	unknown function
UniRef90	UHGV-0379318_12	UniRef90_A0A416HMA1	112.0	7.42e-27	N/A	N/A
eggNOG-mapper	UHGV-0379318_12	445970.ALIPUT_02689	81.6	6.49e-16	DNA-binding transcription factor activity	N/A
Pfam	UHGV-0379318_12	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-0379318_12	COG2188	N/A	N/A	DNA-binding transcriptional regulator, GntR family	N/A
structural_annotation	UHGV-0379318_12	PF19808	N/A	N/A	N/A	N/A
PHROG	UHGV-0379318_14	phrog_190	109.6	2.7e-32	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0379318_14	UniRef90_A0A8D9PDD6	275.0	0	Endonuclease	N/A
eggNOG-mapper	UHGV-0379318_14	862517.HMPREF9225_1657	81.3	5.74e-18	N/A	N/A
Pfam	UHGV-0379318_14	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0379318_14	PF06356	N/A	N/A	N/A	N/A
KOfam	UHGV-0379318_19	K22299	48.1	0.00000000000029	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0379318_19	phrog_8	67.1	3.8e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-0379318_19	UniRef90_A0A8D9PDC4	154.0	0	Repressor protein	N/A
eggNOG-mapper	UHGV-0379318_19	1226322.HMPREF1545_00039	79.3	1.19e-18	sequence-specific DNA binding	N/A
Pfam	UHGV-0379318_19	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0379318_19	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0379318_19	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0379318_20	UniRef90_A0A8D9PDT2	247.0	0	Brinker DNA-binding domain protein	N/A
eggNOG-mapper	UHGV-0379318_20	1226322.HMPREF1545_00042	138.0	3.4e-40	N/A	N/A
structural_annotation	UHGV-0379318_20	PF13542	N/A	N/A	N/A	N/A
KOfam	UHGV-0379318_21	K06909	117.6	1.3e-34	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0379318_21	phrog_979	194.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-0379318_21	UniRef90_A0A8D9PDR5	1018.0	0	Large subunit terminase	N/A
eggNOG-mapper	UHGV-0379318_21	1321782.HMPREF1986_00343	616.0	0	N/A	N/A
Pfam	UHGV-0379318_21	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0379318_21	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0379318_21	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0379318_22	phrog_156	325.3	0	portal protein	head and packaging
UniRef90	UHGV-0379318_22	UniRef90_A0A8D9UH10	1246.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-0379318_22	748224.HMPREF9436_01396	537.0	0	N/A	N/A
structural_annotation	UHGV-0379318_22	PF16510,MF_04120,TIGR01538,COG4383	N/A	N/A	N/A	N/A
UniRef90	UHGV-0379318_23	UniRef90_A0A8D9PDR6	194.0	0	YsxB-like protein	N/A
Pfam	UHGV-0379318_23	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
structural_annotation	UHGV-0379318_23	NF011128,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0379318_24	phrog_13908	310.1	0	N/A	unknown function
UniRef90	UHGV-0379318_24	UniRef90_A0A844DRV7	120.0	5.21e-27	Ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-0379318_24	1410650.JHWL01000003_gene2831	124.0	1.93e-30	N/A	N/A
PHROG	UHGV-0379318_25	phrog_1357	259.3	0	major head protein	head and packaging
UniRef90	UHGV-0379318_25	UniRef90_A0A8D9UH64	796.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-0379318_25	1449126.JQKL01000003_gene1695	452.0	0	N/A	N/A
Pfam	UHGV-0379318_25	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0379318_25	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0379318_25	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0379318_26	phrog_15239	87.3	1.2e-25	N/A	unknown function
eggNOG-mapper	UHGV-0379318_26	1449126.JQKL01000003_gene1694	51.2	0.00000256	N/A	N/A
PHROG	UHGV-0379318_27	phrog_35419	46.3	0.00000000000026	tail fiber protein	tail
eggNOG-mapper	UHGV-0379318_27	1127515.H9C0P1_9CAUD	64.3	0.0000000136	N/A	N/A
structural_annotation	UHGV-0379318_27	PF10651,NF033814	N/A	N/A	N/A	N/A
KOfam	UHGV-0379318_28	K20285	42.0	0.0000000000064	RABEPK; Rab9 effector protein with kelch motifs	N/A
UniRef90	UHGV-0379318_28	UniRef90_A0A8D9PDI7	107.0	6.37e-22	mRNA splicing protein	N/A
Pfam	UHGV-0379318_28	PF07646	N/A	N/A	Kelch motif	Kelch_2
structural_annotation	UHGV-0379318_28	PF16472,MF_01195,TIGR03548,COG3055	N/A	N/A	N/A	N/A
PHROG	UHGV-0379318_30	phrog_37900	43.5	0.0000000000000031	N/A	unknown function
UniRef90	UHGV-0379318_30	UniRef90_UPI00051B4A1C	83.6	0.00000000000000342	N/A	N/A
eggNOG-mapper	UHGV-0379318_30	1519439.JPJG01000060_gene1894	83.6	5.74e-16	N/A	N/A
Pfam	UHGV-0379318_30	PF19789	N/A	N/A	N/A	DUF6273
COG	UHGV-0379318_30	COG3827	N/A	N/A	Cell pole-organizing protein PopZ	N/A
structural_annotation	UHGV-0379318_30	PF19789	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0379318_31	PF05635,NF008911	N/A	N/A	N/A	N/A
KOfam	UHGV-0379318_32	K00986	97.1	2.2e-28	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-0379318_32	phrog_1423	189.5	0	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0379318_32	UniRef90_H1CEN0	374.0	0	Reverse transcriptase domain-containing protein	N/A
eggNOG-mapper	UHGV-0379318_32	742722.HMPREF9463_00262	223.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
PADLOC	UHGV-0379318_32	icity0040	70.8	3.1e-20	RT (reverse transcriptase)	CRISPR-CAS
Pfam	UHGV-0379318_32	PF00078	N/A	N/A	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
COG	UHGV-0379318_32	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-0379318_32	PF00078,TIGR04416,COG3344	N/A	N/A	N/A	N/A
PHROG	UHGV-0379318_35	phrog_2310	45.2	0.00000000000091	N/A	unknown function
eggNOG-mapper	UHGV-0379318_35	1415774.U728_3409	48.5	0.000000429	N/A	N/A
PHROG	UHGV-0379318_37	phrog_4105	103.7	1e-30	N/A	unknown function
UniRef90	UHGV-0379318_37	UniRef90_A0A8D9UHA9	206.0	0	Holin protein	N/A
eggNOG-mapper	UHGV-0379318_37	411460.RUMTOR_01326	140.0	3.32949e-42	N/A	N/A
PHROG	UHGV-0379318_38	phrog_881	92.0	3e-27	holin	lysis
UniRef90	UHGV-0379318_38	UniRef90_A0A8D9PDR9	100.0	1.63e-26	Holin	N/A
eggNOG-mapper	UHGV-0379318_38	742740.HMPREF9474_02251	85.5	3.24e-21	Putative phage holin Dp-1	N/A
Pfam	UHGV-0379318_38	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-0379318_38	PF16938	N/A	N/A	N/A	N/A
PHROG	UHGV-0379318_39	phrog_435	57.5	2.8e-16	endolysin	lysis
UniRef90	UHGV-0379318_39	UniRef90_A0A8D9PDX2	362.0	0	MurNAc-LAA protein	N/A
eggNOG-mapper	UHGV-0379318_39	1226322.HMPREF1545_01953	82.4	5.6e-16	N-acetylmuramoyl-L-alanine amidase	N/A
COG	UHGV-0379318_39	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0379318_39	PF01520,MF_00562,TIGR02883,COG0860	N/A	N/A	N/A	N/A
PHROG	UHGV-0379318_40	phrog_12105	88.7	1.2e-26	N/A	unknown function
eggNOG-mapper	UHGV-0379318_40	1519439.JPJG01000060_gene1891	62.0	0.000000000102	N/A	N/A
PHROG	UHGV-0379318_41	phrog_511	222.9	0	internal virion protein	head and packaging
UniRef90	UHGV-0379318_41	UniRef90_A0A8D9UH72	957.0	0	Stabilization protein (Fragment)	N/A
eggNOG-mapper	UHGV-0379318_41	1226322.HMPREF1545_00785	316.0	0	N/A	N/A
structural_annotation	UHGV-0379318_41	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
UniRef90	UHGV-0379318_42	UniRef90_A0A8D9UGT1	154.0	0	Sigma C capsid protein	N/A
eggNOG-mapper	UHGV-0379318_43	1410650.JHWL01000003_gene2815	65.5	0.00000000462	N/A	N/A
PHROG	UHGV-0379318_44	phrog_22978	904.6	0	N/A	unknown function
UniRef90	UHGV-0379318_44	UniRef90_UPI001C019A6F	417.0	0	OmpH family outer membrane protein	N/A
eggNOG-mapper	UHGV-0379318_44	1410650.JHWL01000003_gene2814	283.0	0	N/A	N/A
Pfam	UHGV-0379318_44	PF18760	N/A	N/A	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
PHROG	UHGV-0379318_45	phrog_3754	94.2	1.3e-27	N/A	unknown function
eggNOG-mapper	UHGV-0379318_45	476272.RUMHYD_01764	162.0	0	N/A	N/A
PHROG	UHGV-0379318_46	phrog_21718	74.2	1.8e-21	N/A	unknown function
eggNOG-mapper	UHGV-0379318_46	476272.RUMHYD_01768	68.9	0.00000000000081	N/A	N/A
PHROG	UHGV-0379318_47	phrog_22984	77.0	2e-22	N/A	unknown function
PHROG	UHGV-0379318_48	phrog_16490	121.6	9.3e-36	N/A	unknown function
eggNOG-mapper	UHGV-0379318_48	1408437.JNJN01000043_gene803	173.0	0	N/A	N/A
PHROG	UHGV-0379318_49	phrog_20016	186.6	0	N/A	unknown function
UniRef90	UHGV-0379318_49	UniRef90_A0A285PT46	190.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0379318_49	1226322.HMPREF1545_00077	166.0	0	N/A	N/A
structural_annotation	UHGV-0379318_49	PF18573,NF033147	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0379318_50	PF12510	N/A	N/A	N/A	N/A
KOfam	UHGV-0379318_51	K14059	145.8	4.80645e-43	int; integrase	N/A
PHROG	UHGV-0379318_51	phrog_1	162.3	0	integrase	integration and excision
UniRef90	UHGV-0379318_51	UniRef90_A0A8D9UGU2	736.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0379318_51	445972.ANACOL_01797	282.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0379318_51	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0379318_51	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0379318_51	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
UniRef90	UHGV-0379318_52	UniRef90_A0A8D9UHA6	268.0	0	Helix-turn-helix XRE-family like protein	N/A
Pfam	UHGV-0379318_52	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0379318_52	PF12844,MF_00535,TIGR03070,COG1396	N/A	N/A	N/A	N/A
Pfam	UHGV-0379318_53	PF09811	N/A	N/A	Essential protein Yae1, N terminal	Yae1_N
UniRef90	UHGV-0379318_55	UniRef90_A0A8D9UHB1	143.0	2.78018e-42	Repressor protein CI	N/A
Pfam	UHGV-0379318_55	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0379318_55	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-0379318_55	PF12844,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0379318_57	UniRef90_A0A8D9PDN2	130.0	2.21e-38	DNA-binding protein	N/A
structural_annotation	UHGV-0379318_57	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0379318_58	UniRef90_A0A8D9PDM8	134.0	6.54e-40	Pyocin activator protein	N/A
PHROG	UHGV-0379318_60	phrog_22529	50.3	0.00000000000003	N/A	unknown function
UniRef90	UHGV-0379318_60	UniRef90_A0A8D9UHA1	310.0	0	3D containing protein	N/A
eggNOG-mapper	UHGV-0379318_60	658088.HMPREF0987_02675	63.5	0.00000000133	peptidase	N/A
Pfam	UHGV-0379318_60	PF06725	N/A	N/A	3D domain	3D
COG	UHGV-0379318_60	COG3584	N/A	N/A	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	N/A
structural_annotation	UHGV-0379318_60	COG3584	N/A	N/A	N/A	N/A
PHROG	UHGV-0379318_62	phrog_4433	138.9	4.30002e-41	N/A	unknown function
UniRef90	UHGV-0379318_62	UniRef90_A0A6M5C839	107.0	1.33e-26	Putative ADP-ribosyltransferase	N/A
eggNOG-mapper	UHGV-0379318_62	106648.BBLJ01000054_gene3814	100.0	3.92e-25	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0379318_62	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0379318	Yes	42,038	57	99	1
UHGV-0170259	No	41,806	57	98	1
UHGV-0198335	No	16,926	57	38	1
UHGV-1545488	No	10,153	60	24	1