vOTU vOTU-084544

vOTU: vOTU-084544

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-084544
Number of genomes	2
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp003526955
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00027 → vGENUS-01788 → vSUBGEN-35750 → vOTU-084544
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp003526955
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0082081
Biosample ID	SAMEA2737839
Genome length (bp)	34,935 bps
CheckV completeness	94.76% (High-quality)
CDS count	53
CDS density	91.90%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp003526955	Total connections	981	Host agreement	85.73
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp003526955	Total connections	206	Host agreement	96.6

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 94.76)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0082081_1	K14059	222.7	0	int; integrase	N/A
PHROG	UHGV-0082081_1	phrog_1	193.6	0	integrase	integration and excision
UniRef90	UHGV-0082081_1	UniRef90_A0A2N0ULT2	461.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0082081_1	428125.CLOLEP_02743	308.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0082081_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0082081_1	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0082081_1	PF00589,PF02920,MF_01808,TIGR02224,COG4974,COG3422	N/A	N/A	N/A	N/A
PHROG	UHGV-0082081_2	phrog_1847	524.4	0	N/A	unknown function
UniRef90	UHGV-0082081_2	UniRef90_A0A355NQ11	471.0	0	N/A	N/A
eggNOG-mapper	UHGV-0082081_2	1235792.C808_05258	408.0	0	N/A	N/A
Pfam	UHGV-0082081_2	PF13250	N/A	N/A	N/A	DUF4041
Pfam	UHGV-0082081_2	PF10544	N/A	N/A	T5orf172 domain	T5orf172
COG	UHGV-0082081_2	COG0172	N/A	N/A	Seryl-tRNA synthetase	N/A
structural_annotation	UHGV-0082081_2	PF13250,PF19824,MF_01506	N/A	N/A	N/A	N/A
UniRef90	UHGV-0082081_3	UniRef90_A0A374E958	63.2	0.0000000000126	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0082081_3	1232443.BAIA02000106_gene3117	70.9	0.000000000000014	N/A	N/A
structural_annotation	UHGV-0082081_3	PF06114	N/A	N/A	N/A	N/A
PHROG	UHGV-0082081_4	phrog_2967	72.5	5.9e-21	transcriptional regulator	transcription regulation
UniRef90	UHGV-0082081_4	UniRef90_A0A412UNH6	211.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0082081_4	861450.HMPREF0080_02022	88.6	8.79e-21	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0082081_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0082081_4	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0082081_4	PF01381,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0082081_5	K07729	50.5	0.000000000000049	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0082081_5	phrog_6499	44.2	0.0000000000021	transcriptional regulator	transcription regulation
UniRef90	UHGV-0082081_5	UniRef90_A0A348ZC94	113.0	1.84e-31	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0082081_5	1235801.C822_00106	63.5	0.00000000000142	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-0082081_5	retron_type_VI_hth_cluster2_1	44.6	0.0000000000043	N/A	Retron
Pfam	UHGV-0082081_5	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0082081_5	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0082081_5	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0082081_10	UniRef90_UPI0005510EBF	64.7	0.00000000000272	helix-turn-helix domain-containing protein	N/A
structural_annotation	UHGV-0082081_10	PF12728,NF040990,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-0082081_16	phrog_674	157.9	0	N/A	unknown function
UniRef90	UHGV-0082081_16	UniRef90_A0A374N9T8	376.0	0	N/A	N/A
eggNOG-mapper	UHGV-0082081_16	1408437.JNJN01000039_gene373	186.0	0	N/A	N/A
Pfam	UHGV-0082081_16	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-0082081_16	PF07083	N/A	N/A	N/A	N/A
KOfam	UHGV-0082081_17	K07455	197.1	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0082081_17	phrog_148	210.3	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0082081_17	UniRef90_A0A374N9W0	508.0	0	Recombinase	N/A
eggNOG-mapper	UHGV-0082081_17	428127.EUBDOL_01509	280.0	0	RecT family	N/A
Pfam	UHGV-0082081_17	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0082081_17	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0082081_17	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0082081_17	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
KOfam	UHGV-0082081_18	K06167	53.2	0.0000000000000047	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	N/A
PHROG	UHGV-0082081_18	phrog_392	125.3	6e-37	metal-dependent hydrolase	other
UniRef90	UHGV-0082081_18	UniRef90_A0A373XYI8	349.0	0	MBL fold metallo-hydrolase	N/A
eggNOG-mapper	UHGV-0082081_18	665956.HMPREF1032_03101	156.0	5.60519e-45	May be involved in the transport of PQQ or its precursor to the periplasm	N/A
Pfam	UHGV-0082081_18	PF12706	N/A	N/A	Beta-lactamase superfamily domain	Lactamase_B_2
COG	UHGV-0082081_18	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
structural_annotation	UHGV-0082081_18	PF12706,MF_01818,TIGR03307,COG1234	N/A	N/A	N/A	N/A
PHROG	UHGV-0082081_19	phrog_398	208.2	0	N/A	unknown function
UniRef90	UHGV-0082081_19	UniRef90_UPI000C7B20DA	192.0	0	putative HNHc nuclease	N/A
eggNOG-mapper	UHGV-0082081_19	293826.Amet_2584	176.0	0	Putative HNHc nuclease	N/A
Pfam	UHGV-0082081_19	PF16784	N/A	N/A	Putative HNHc nuclease	HNHc_6
structural_annotation	UHGV-0082081_19	PF16784	N/A	N/A	N/A	N/A
PHROG	UHGV-0082081_20	phrog_2562	138.5	5.79997e-41	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0082081_20	UniRef90_A0A374NA85	322.0	0	N/A	N/A
eggNOG-mapper	UHGV-0082081_20	1235790.C805_00030	146.0	1.71e-39	N/A	N/A
Pfam	UHGV-0082081_20	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
COG	UHGV-0082081_20	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0082081_20	PF14297	N/A	N/A	N/A	N/A
KOfam	UHGV-0082081_21	K02315	129.4	3.6e-38	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0082081_21	phrog_50	127.9	9.5e-38	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0082081_21	UniRef90_A0A374UPV4	487.0	0	Bac_DnaA domain-containing protein	N/A
eggNOG-mapper	UHGV-0082081_21	445972.ANACOL_01829	202.0	0	N/A	N/A
Pfam	UHGV-0082081_21	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-0082081_21	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0082081_21	PF01695,MF_01158,NF005378,COG1484	N/A	N/A	N/A	N/A
KOfam	UHGV-0082081_22	K01160	51.3	0.000000000000037	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0082081_22	phrog_140	98.3	8.5e-29	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0082081_22	UniRef90_A0A374US90	214.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0082081_22	411462.DORLON_00806	186.0	0	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0082081_22	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0082081_22	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0082081_22	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
Pfam	UHGV-0082081_23	PF18662	N/A	N/A	Cch helix turn helix domain	HTH_56
structural_annotation	UHGV-0082081_25	PF09889	N/A	N/A	N/A	N/A
PHROG	UHGV-0082081_27	phrog_323	71.7	8e-28	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0082081_27	UniRef90_UPI001C01CFF8	312.0	0	SANT/Myb domain-containing protein	N/A
eggNOG-mapper	UHGV-0082081_27	756499.Desde_1065	352.0	0	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	N/A
dbAPIS	UHGV-0082081_27	APIS006	N/A	N/A	Trigger programmed cell death (PCD) by P4 prophage.	N/A
structural_annotation	UHGV-0082081_27	PF11112,NF040595	N/A	N/A	N/A	N/A
PHROG	UHGV-0082081_28	phrog_2118	124.6	7.7e-37	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0082081_28	UniRef90_R6QZD0	218.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0082081_28	610130.Closa_0730	163.0	0	HNH endonuclease	N/A
Pfam	UHGV-0082081_28	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0082081_28	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0082081_30	phrog_25754	67.6	7.8e-20	N/A	unknown function
structural_annotation	UHGV-0082081_30	PF10842,MF_00436,TIGR02383	N/A	N/A	N/A	N/A
KOfam	UHGV-0082081_32	K00390	48.4	0.00000000000013	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0082081_32	phrog_424	58.1	1.6e-16	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0082081_32	UniRef90_UPI001C034617	270.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-0082081_32	1408437.JNJN01000032_gene2312	195.0	0	Phosphoadenosine phosphosulfate reductase	N/A
Pfam	UHGV-0082081_32	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0082081_32	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
eggNOG-mapper	UHGV-0082081_33	1540257.JQMW01000004_gene433	50.8	0.0000026	N/A	N/A
structural_annotation	UHGV-0082081_33	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0082081_34	phrog_3634	124.0	1.5e-36	N/A	unknown function
eggNOG-mapper	UHGV-0082081_34	411459.RUMOBE_00941	197.0	0	COG NOG22561 non supervised orthologous group	N/A
COG	UHGV-0082081_34	COG0457	N/A	N/A	Tetratricopeptide (TPR) repeat	N/A
structural_annotation	UHGV-0082081_34	PF10137,MF_03036,TIGR03646,COG4271	N/A	N/A	N/A	N/A
PHROG	UHGV-0082081_35	phrog_309	148.8	1.26117e-44	terminase small subunit	head and packaging
UniRef90	UHGV-0082081_35	UniRef90_UPI001A9BCC34	220.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0082081_35	693746.OBV_18020	145.0	1.3004e-42	transposase activity	N/A
Pfam	UHGV-0082081_35	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
COG	UHGV-0082081_35	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
structural_annotation	UHGV-0082081_35	PF07141	N/A	N/A	N/A	N/A
KOfam	UHGV-0082081_36	K06909	79.2	5.7e-23	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0082081_36	phrog_2	86.0	6.9e-25	terminase large subunit	head and packaging
UniRef90	UHGV-0082081_36	UniRef90_UPI00189AB5B3	863.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-0082081_36	1304866.K413DRAFT_3034	610.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0082081_36	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0082081_36	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0082081_36	PF04466,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0082081_37	phrog_533	335.5	0	portal protein	head and packaging
UniRef90	UHGV-0082081_37	UniRef90_UPI00189C53D6	851.0	0	phage capsid protein	N/A
eggNOG-mapper	UHGV-0082081_37	1304866.K413DRAFT_3035	474.0	0	N/A	N/A
structural_annotation	UHGV-0082081_37	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0082081_38	phrog_581	308.3	0	minor head protein	head and packaging
UniRef90	UHGV-0082081_38	UniRef90_UPI001897AC3D	985.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0082081_38	658655.HMPREF0988_02563	349.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0082081_38	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0082081_38	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0082081_38	PF06152,TIGR01641	N/A	N/A	N/A	N/A
PHROG	UHGV-0082081_40	phrog_194	102.5	5.2e-30	head scaffolding protein	head and packaging
UniRef90	UHGV-0082081_40	UniRef90_UPI0018995066	343.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0082081_40	742765.HMPREF9457_02126	163.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0082081_40	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0082081_40	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0082081_41	phrog_422	236.9	0	major head protein	head and packaging
eggNOG-mapper	UHGV-0082081_41	693746.OBV_18090	386.0	0	N/A	N/A
structural_annotation	UHGV-0082081_41	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0082081_42	phrog_541	77.7	1.4e-22	head-tail adaptor	connector
eggNOG-mapper	UHGV-0082081_42	1449050.JNLE01000003_gene3888	80.1	9.32e-18	N/A	N/A
PHROG	UHGV-0082081_43	phrog_3366	64.6	1.2e-18	N/A	unknown function
Pfam	UHGV-0082081_43	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0082081_43	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-0082081_44	phrog_556	109.6	1.1e-32	minor head protein	head and packaging
UniRef90	UHGV-0082081_44	UniRef90_UPI00189BC4F9	333.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0082081_44	1449050.JNLE01000003_gene3886	146.0	8.70206e-43	N/A	N/A
Pfam	UHGV-0082081_44	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0082081_44	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0082081_45	phrog_3266	95.3	5.2e-28	tail completion	connector
eggNOG-mapper	UHGV-0082081_45	1449050.JNLE01000003_gene3885	140.0	7.53002e-41	N/A	N/A
structural_annotation	UHGV-0082081_45	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0082081_46	phrog_3099	145.1	3.40516e-43	N/A	unknown function
eggNOG-mapper	UHGV-0082081_46	1160721.RBI_II00532	209.0	0	N/A	N/A
structural_annotation	UHGV-0082081_46	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0082081_47	phrog_11299	102.1	5.5e-30	N/A	unknown function
eggNOG-mapper	UHGV-0082081_47	1449050.JNLE01000003_gene3883	67.0	0.0000000000042	N/A	N/A
structural_annotation	UHGV-0082081_47	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0082081_48	phrog_706	130.7	1e-38	N/A	unknown function
UniRef90	UHGV-0082081_48	UniRef90_UPI001B3C82AE	254.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0082081_48	1160721.RBI_II00530	192.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0082081_48	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0082081_48	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0082081_50	phrog_1535	508.2	0	tail length tape measure protein	tail
UniRef90	UHGV-0082081_50	UniRef90_A0A2N0ULX3	1137.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0082081_50	33035.JPJF01000093_gene2243	354.0	0	phage tail tape measure protein	N/A
COG	UHGV-0082081_50	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0082081_50	PF20155,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0082081_51	phrog_1194	63.9	2.5e-18	N/A	unknown function
eggNOG-mapper	UHGV-0082081_51	397290.C810_05238	97.1	6.37e-24	N/A	N/A
Pfam	UHGV-0082081_51	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0082081_51	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0082081_52	phrog_18190	65.0	8.9e-30	N/A	unknown function
eggNOG-mapper	UHGV-0082081_52	483218.BACPEC_01143	73.6	0.0000000000411	N/A	N/A
structural_annotation	UHGV-0082081_52	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0082081	Yes	34,935	39	95	1
UHGV-1681419	No	12,843	41	33	1