vOTU vOTU-084787

vOTU: vOTU-084787

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-084787
Number of genomes	5
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00239 → vGENUS-06231 → vSUBGEN-37045 → vOTU-084787
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B
Host range breadth	Species
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0334185
Biosample ID	SAMEA4813985
Genome length (bp)	25,880 bps
CheckV completeness	94.07% (High-quality)
CDS count	41
CDS density	96.60%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	750	Host agreement	79.2
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	146	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 94.07)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0334185_1	phrog_5302	286.0	0	tail protein	tail
UniRef90	UHGV-0334185_1	UniRef90_A0A373XLZ6	1189.0	0	N/A	N/A
eggNOG-mapper	UHGV-0334185_1	742740.HMPREF9474_02337	305.0	0	cellulose 1,4-beta-cellobiosidase activity	N/A
Pfam	UHGV-0334185_1	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
COG	UHGV-0334185_1	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
structural_annotation	UHGV-0334185_1	PF10651,NF040788	N/A	N/A	N/A	N/A
PHROG	UHGV-0334185_2	phrog_1067	140.4	1.10002e-41	minor head protein	head and packaging
UniRef90	UHGV-0334185_2	UniRef90_A0A348ZBV6	178.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0334185_2	1160721.RBI_I01574	125.0	3e-28	Prophage endopeptidase tail	N/A
Pfam	UHGV-0334185_2	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0334185_2	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0334185_2	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0334185_2	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
UniRef90	UHGV-0334185_3	UniRef90_A0A1G5CPA2	122.0	2.54e-30	Phage-related protein	N/A
eggNOG-mapper	UHGV-0334185_3	1246.JMEA01000006_gene51	69.7	0.000000000024	phage tail	N/A
COG	UHGV-0334185_3	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0334185_3	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0334185_4	phrog_23464	254.8	0	N/A	unknown function
UniRef90	UHGV-0334185_4	UniRef90_A0A1C6JGQ9	180.0	4.2039e-45	Phage-related minor tail protein	N/A
eggNOG-mapper	UHGV-0334185_4	665950.HMPREF1025_02660	181.0	2.8026e-45	phage tail tape measure protein	N/A
COG	UHGV-0334185_4	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0334185_4	COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0334185_6	phrog_1021	50.6	0.0000000000000016	N/A	unknown function
PHROG	UHGV-0334185_7	phrog_885	134.8	5.6e-40	major tail protein	tail
UniRef90	UHGV-0334185_7	UniRef90_Q894J4	159.0	1.4013e-45	Conserved protein	N/A
eggNOG-mapper	UHGV-0334185_7	1321814.HMPREF9089_00935	172.0	0	N/A	N/A
structural_annotation	UHGV-0334185_7	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0334185_8	PF12691	N/A	N/A	N/A	N/A
UniRef90	UHGV-0334185_9	UniRef90_UPI001A9B6FBF	164.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0334185_9	1414720.CBYM010000040_gene1650	134.0	2.73e-38	N/A	N/A
structural_annotation	UHGV-0334185_9	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0334185_10	phrog_1951	91.7	5e-27	head-tail adaptor	connector
UniRef90	UHGV-0334185_10	UniRef90_A0A374MZF9	202.0	0	Phage head-tail adapter protein	N/A
eggNOG-mapper	UHGV-0334185_10	1414720.CBYM010000040_gene1649	66.2	0.00000000000103	head-tail adaptor	N/A
COG	UHGV-0334185_10	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0334185_10	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0334185_11	phrog_5223	54.9	0.0000000000000013	neck protein	connector
eggNOG-mapper	UHGV-0334185_11	931626.Awo_c31020	48.1	0.00000641	N/A	N/A
NCBIFam	UHGV-0334185_11	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-0334185_11	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0334185_12	phrog_10	149.7	2.52234e-44	major head protein	head and packaging
UniRef90	UHGV-0334185_12	UniRef90_A0A374N9V9	729.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0334185_12	1280689.AUJC01000011_gene1521	329.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0334185_12	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0334185_12	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0334185_12	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0334185_12	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0334185_13	K01358	117.6	1.5e-34	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0334185_13	phrog_94	184.9	0	head maturation protease	head and packaging
UniRef90	UHGV-0334185_13	UniRef90_A0A374NBM3	399.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0334185_13	1203606.HMPREF1526_00979	178.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0334185_13	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0334185_13	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0334185_13	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0334185_14	phrog_12	180.2	0	portal protein	head and packaging
UniRef90	UHGV-0334185_14	UniRef90_A0A374NAE1	768.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0334185_14	626523.GCWU000342_01027	406.0	0	Portal protein	N/A
Pfam	UHGV-0334185_14	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0334185_14	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0334185_14	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0334185_15	phrog_9	391.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-0334185_15	UniRef90_A0A374NB45	977.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0334185_15	1235793.C809_01917	724.0	0	Phage Terminase	N/A
Pfam	UHGV-0334185_15	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0334185_15	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0334185_15	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0334185_15	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0334185_16	phrog_1066	115.6	2.4e-34	N/A	unknown function
UniRef90	UHGV-0334185_16	UniRef90_A0A0D0SQQ8	85.1	7.05e-19	N/A	N/A
eggNOG-mapper	UHGV-0334185_16	1203606.HMPREF1526_00982	106.0	3.29e-28	N/A	N/A
PHROG	UHGV-0334185_17	phrog_119	59.2	6.4e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0334185_17	UniRef90_A0A374N9T6	218.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0334185_17	1235793.C809_01915	122.0	2.69e-34	HNH endonuclease	N/A
Pfam	UHGV-0334185_17	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0334185_17	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
UniRef90	UHGV-0334185_18	UniRef90_A0A374MXG7	144.0	1.87774e-43	XRE family transcriptional regulator	N/A
Pfam	UHGV-0334185_18	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0334185_18	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
KOfam	UHGV-0334185_21	K18830	52.8	0.0000000000000099	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0334185_21	phrog_8	64.4	2.6e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0334185_21	UniRef90_A0A374N9T4	118.0	7.83e-34	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0334185_21	717605.Theco_0106	77.4	2.58e-17	Cro/C1-type HTH DNA-binding domain	N/A
PADLOC	UHGV-0334185_21	retron_type_VI_hth_cluster2_1	40.6	0.00000000007	N/A	Retron
Pfam	UHGV-0334185_21	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0334185_21	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0334185_21	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0334185_24	K02314	231.1	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0334185_24	phrog_19	218.8	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0334185_24	UniRef90_A0A7X1LVW3	237.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0334185_24	1238186.AOCN01000015_gene812	134.0	3e-32	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-0334185_24	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0334185_24	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0334185_24	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-0334185_25	phrog_16304	68.8	9.6e-20	N/A	unknown function
UniRef90	UHGV-0334185_25	UniRef90_UPI001A9ACC6F	80.9	0.00000000000000486	N/A	N/A
eggNOG-mapper	UHGV-0334185_25	1168289.AJKI01000067_gene1520	53.5	0.00000146	N/A	N/A
Pfam	UHGV-0334185_25	PF19808	N/A	N/A	N/A	DUF6291
PHROG	UHGV-0334185_27	phrog_824	44.4	0.0000000000024	N/A	unknown function
UniRef90	UHGV-0334185_27	UniRef90_A0A1V1UM78	63.5	0.0000000000673	VRR-NUC domain protein	N/A
eggNOG-mapper	UHGV-0334185_27	469616.FMAG_01951	52.0	0.000000416	VRR_NUC	N/A
Pfam	UHGV-0334185_27	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-0334185_27	PF03838,MF_04160,NF002583	N/A	N/A	N/A	N/A
KOfam	UHGV-0334185_28	K19789	309.5	0	radD; DNA repair protein RadD	N/A
PHROG	UHGV-0334185_28	phrog_16	273.6	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0334185_28	UniRef90_A0A356CZA9	514.0	0	Helicase	N/A
eggNOG-mapper	UHGV-0334185_28	1410670.JHXF01000015_gene2270	484.0	0	helicase	N/A
PADLOC	UHGV-0334185_28	mREase_IV_00005	95.4	8.7e-29	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0334185_28	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0334185_28	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0334185_28	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0334185_28	PF04851,PF00271,MF_01489,TIGR04095,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-0334185_29	phrog_18107	69.0	8e-20	N/A	unknown function
UniRef90	UHGV-0334185_29	UniRef90_UPI0004855F5F	62.8	0.00000000771	N/A	N/A
eggNOG-mapper	UHGV-0334185_29	1200557.JHWV01000001_gene292	62.8	0.00000000129	N/A	N/A
structural_annotation	UHGV-0334185_29	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-0334185_30	phrog_2872	215.6	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0334185_30	UniRef90_A0A8J6P193	243.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0334185_30	1232453.BAIF02000010_gene3337	204.0	0	AAA domain	N/A
Pfam	UHGV-0334185_30	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-0334185_30	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-0334185_34	phrog_424	88.5	7.1e-26	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0334185_34	UniRef90_C0CTA2	457.0	0	Phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-0334185_34	693746.OBV_43240	545.0	0	N/A	N/A
COG	UHGV-0334185_34	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0334185_34	PF01507,MF_00064,TIGR00434,COG0175	N/A	N/A	N/A	N/A
UniRef90	UHGV-0334185_36	UniRef90_A0A2N0ULT9	137.0	4.22001e-41	DNA binding domain, excisionase family	N/A
eggNOG-mapper	UHGV-0334185_36	1283300.ATXB01000001_gene1737	45.8	0.0000097	DNA excision	N/A
Pfam	UHGV-0334185_36	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-0334185_36	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
COG	UHGV-0334185_36	COG3311	N/A	N/A	DNA-binding transcriptional regulator AlpA	N/A
structural_annotation	UHGV-0334185_36	PF12728,NF040990,COG3311	N/A	N/A	N/A	N/A
KOfam	UHGV-0334185_37	K15773	48.1	0.00000000000025	hipB; HTH-type transcriptional regulator / antitoxin HipB	N/A
PHROG	UHGV-0334185_37	phrog_3	44.3	0.0000000000073	transcriptional repressor	transcription regulation
UniRef90	UHGV-0334185_37	UniRef90_A0A374N3U7	125.0	2.12e-36	XRE family transcriptional regulator	N/A
Pfam	UHGV-0334185_37	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0334185_37	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0334185_37	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0334185_38	phrog_3773	53.7	0.0000000000000038	N/A	unknown function
structural_annotation	UHGV-0334185_38	PF01423,MF_00257,NF041667	N/A	N/A	N/A	N/A
UniRef90	UHGV-0334185_39	UniRef90_UPI001494A832	48.9	0.00000401	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0334185_39	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0334185_39	PF05339,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0334185_40	UniRef90_A0A373XLN2	270.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0334185_40	1235793.C809_00679	97.4	2.35e-24	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0334185_40	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0334185_40	PF05339,NF007257,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0334185_41	phrog_1914	78.9	6.8e-23	N/A	unknown function
UniRef90	UHGV-0334185_41	UniRef90_R7GSX4	87.0	4.55e-20	Putative toxin-antitoxin system toxin component	N/A
eggNOG-mapper	UHGV-0334185_41	1160721.RBI_I01604	116.0	9.03e-32	N/A	N/A
Pfam	UHGV-0334185_41	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0334185_41	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0334185_41	PF06114	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0334185	Yes	25,880	41	94	1
UHGV-0215003	No	11,810	43	48	1
UHGV-1684264	No	17,592	41	48	1
UHGV-0049882	No	11,975	42	33	1
UHGV-1579214	No	11,975	42	33	1