vOTU vOTU-084845

vOTU: vOTU-084845

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-084845
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-02099 → vGENUS-02948 → vSUBGEN-25975 → vOTU-084845
Host lineage	Bacteria → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1493907
Biosample ID	SAMN03283272
Genome length (bp)	42,795 bps
CheckV completeness	99.90% (High-quality)
CDS count	62
CDS density	87.49%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae	Total connections	15	Host agreement	73.33
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1493907_3	K18830	53.6	0.000000000000005	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1493907_3	phrog_3	44.9	0.0000000000041	transcriptional repressor	transcription regulation
UniRef90	UHGV-1493907_3	UniRef90_A0A844DFR0	129.0	4.2e-36	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1493907_3	903814.ELI_1263	102.0	2.04e-26	Helix-turn-helix domain	N/A
Pfam	UHGV-1493907_3	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1493907_3	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1493907_3	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
Pfam	UHGV-1493907_6	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1493907_6	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-1493907_6	PF01381,MF_02017,TIGR03070,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-1493907_7	K14059	185.8	0	int; integrase	N/A
PHROG	UHGV-1493907_7	phrog_1	187.0	0	integrase	integration and excision
UniRef90	UHGV-1493907_7	UniRef90_A0A1I0JMR0	203.0	0	Integrase	N/A
eggNOG-mapper	UHGV-1493907_7	1095750.HMPREF9970_1688	173.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-1493907_7	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1493907_7	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1493907_7	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1493907_7	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1493907_9	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-1493907_10	phrog_16490	54.6	0.0000000000000022	N/A	unknown function
eggNOG-mapper	UHGV-1493907_10	641112.ACOK01000103_gene525	77.4	0.0000000000000105	N/A	N/A
Pfam	UHGV-1493907_13	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
UniRef90	UHGV-1493907_14	UniRef90_A0A4Q5C6B7	95.5	1.32e-23	Branched-chain amino acid ABC transporter permease	N/A
eggNOG-mapper	UHGV-1493907_14	665950.HMPREF1025_02515	95.5	2.21e-24	N/A	N/A
eggNOG-mapper	UHGV-1493907_15	888727.HMPREF9092_1332	97.4	4.58e-22	N/A	N/A
PHROG	UHGV-1493907_16	phrog_608	67.4	1.9e-19	holin	lysis
UniRef90	UHGV-1493907_16	UniRef90_R6I9L8	100.0	1.04e-24	Putative phage holin	N/A
Pfam	UHGV-1493907_16	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
structural_annotation	UHGV-1493907_16	PF09682,TIGR01673	N/A	N/A	N/A	N/A
UniRef90	UHGV-1493907_17	UniRef90_A0A7X1I7W3	566.0	0	LPD3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1493907_17	693746.OBV_01590	500.0	0	N/A	N/A
PHROG	UHGV-1493907_18	phrog_21397	49.4	0.000000000000055	N/A	unknown function
eggNOG-mapper	UHGV-1493907_18	1519439.JPJG01000060_gene1904	107.0	4.8e-22	N/A	N/A
PHROG	UHGV-1493907_20	phrog_511	212.7	0	internal virion protein	head and packaging
UniRef90	UHGV-1493907_20	UniRef90_A0A8D9UH72	261.0	0	Stabilization protein (Fragment)	N/A
eggNOG-mapper	UHGV-1493907_20	748224.HMPREF9436_01402	185.0	0	N/A	N/A
structural_annotation	UHGV-1493907_20	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1493907_22	742733.HMPREF9469_05008	48.1	0.00000431	N/A	N/A
eggNOG-mapper	UHGV-1493907_23	742733.HMPREF9469_05009	66.2	0.00000000000583	N/A	N/A
KOfam	UHGV-1493907_24	K16628	185.6	0	COL7A; collagen type VII alpha	N/A
PHROG	UHGV-1493907_24	phrog_819	132.6	0	tail protein	tail
eggNOG-mapper	UHGV-1493907_24	1519439.JPJG01000060_gene1892	80.9	0.000000000000753	Collagen triple helix repeat (20 copies)	N/A
Pfam	UHGV-1493907_24	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-1493907_24	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
PHROG	UHGV-1493907_25	phrog_15239	67.5	1.7e-19	N/A	unknown function
eggNOG-mapper	UHGV-1493907_25	1507.HMPREF0262_03462	49.3	0.00000119	N/A	N/A
PHROG	UHGV-1493907_26	phrog_1357	292.6	0	major head protein	head and packaging
UniRef90	UHGV-1493907_26	UniRef90_A0A1Y4WLZ7	424.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-1493907_26	1449126.JQKL01000003_gene1695	347.0	0	N/A	N/A
Pfam	UHGV-1493907_26	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-1493907_26	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-1493907_26	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1493907_27	phrog_13908	279.5	0	N/A	unknown function
UniRef90	UHGV-1493907_27	UniRef90_A0A844DRV7	90.1	1.67e-16	Ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-1493907_27	1321782.HMPREF1986_00346	77.0	0.000000000000316	N/A	N/A
PHROG	UHGV-1493907_29	phrog_156	313.3	0	portal protein	head and packaging
UniRef90	UHGV-1493907_29	UniRef90_A0A8D9UH10	729.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-1493907_29	748224.HMPREF9436_01396	516.0	0	N/A	N/A
structural_annotation	UHGV-1493907_29	PF16510,MF_04120,TIGR01538,COG4383	N/A	N/A	N/A	N/A
KOfam	UHGV-1493907_30	K06909	106.2	3.9e-31	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1493907_30	phrog_979	139.4	5.89947e-43	terminase large subunit	head and packaging
UniRef90	UHGV-1493907_30	UniRef90_A0A8D9PDR5	747.0	0	Large subunit terminase	N/A
eggNOG-mapper	UHGV-1493907_30	657322.FPR_02290	552.0	0	Terminase-like family	N/A
Pfam	UHGV-1493907_30	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1493907_30	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1493907_30	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-1493907_31	UniRef90_A0A8D9PDT2	192.0	0	Brinker DNA-binding domain protein	N/A
eggNOG-mapper	UHGV-1493907_31	1226322.HMPREF1545_00042	135.0	4.4e-39	N/A	N/A
structural_annotation	UHGV-1493907_31	PF13542	N/A	N/A	N/A	N/A
KOfam	UHGV-1493907_34	K07171	70.0	4.9e-20	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	N/A
PHROG	UHGV-1493907_34	phrog_1936	87.3	1.8e-25	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1493907_34	UniRef90_UPI001487591F	79.0	0.00000000000000184	type II toxin-antitoxin system PemK/MazF family toxin	N/A
eggNOG-mapper	UHGV-1493907_34	411459.RUMOBE_01744	70.9	0.000000000000355	PemK-like, MazF-like toxin of type II toxin-antitoxin system	N/A
Pfam	UHGV-1493907_34	PF02452	N/A	N/A	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
COG	UHGV-1493907_34	COG2337	N/A	N/A	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	N/A
structural_annotation	UHGV-1493907_34	PF02452,NF007386,COG2337	N/A	N/A	N/A	N/A
PHROG	UHGV-1493907_35	phrog_190	113.0	2.2e-33	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1493907_35	UniRef90_A0A8D9PDD6	128.0	8.13e-36	Endonuclease	N/A
eggNOG-mapper	UHGV-1493907_35	1226322.HMPREF1545_00295	128.0	4.51e-36	N/A	N/A
Pfam	UHGV-1493907_35	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-1493907_35	PF06356	N/A	N/A	N/A	N/A
PHROG	UHGV-1493907_36	phrog_21498	299.2	0	N/A	unknown function
UniRef90	UHGV-1493907_36	UniRef90_A0A3R6J122	240.0	0	Chromosome partitioning protein ParB	N/A
eggNOG-mapper	UHGV-1493907_36	78346.BRUM_0376	241.0	0	DNA binding	N/A
COG	UHGV-1493907_36	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-1493907_36	PF05869,TIGR01712	N/A	N/A	N/A	N/A
KOfam	UHGV-1493907_39	K03111	127.0	2.3e-37	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1493907_39	phrog_44	121.5	6.9e-36	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1493907_39	UniRef90_R6JNI5	139.0	5.51999e-40	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1493907_39	1507.HMPREF0262_00434	130.0	2.52e-37	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1493907_39	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1493907_39	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1493907_39	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1493907_39	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1493907_39	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1493907_40	phrog_1029	157.9	0	N/A	unknown function
eggNOG-mapper	UHGV-1493907_40	552398.HMPREF0866_01625	132.0	4.04e-35	N/A	N/A
structural_annotation	UHGV-1493907_40	PF10065,COG5532	N/A	N/A	N/A	N/A
PHROG	UHGV-1493907_41	phrog_997	96.7	1.7e-28	replication terminator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1493907_41	UniRef90_R6MCS9	106.0	1.63e-27	N/A	N/A
eggNOG-mapper	UHGV-1493907_41	1203606.HMPREF1526_01889	118.0	5.86e-33	replication terminator protein, phage associated	N/A
PHROG	UHGV-1493907_42	phrog_7566	97.5	7.5e-29	N/A	unknown function
eggNOG-mapper	UHGV-1493907_42	693746.OBV_25470	98.2	1.85e-25	N/A	N/A
PHROG	UHGV-1493907_43	phrog_72	58.8	7.8e-17	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1493907_43	UniRef90_A0A8D9PDS2	182.0	0	NinB protein	N/A
eggNOG-mapper	UHGV-1493907_43	445972.ANACOL_01825	145.0	6.40954e-42	N/A	N/A
structural_annotation	UHGV-1493907_43	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-1493907_44	phrog_7838	141.4	5.09933e-42	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1493907_44	UniRef90_A0A8D9UGW3	229.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-1493907_44	742767.HMPREF9456_02397	163.0	0	N/A	N/A
structural_annotation	UHGV-1493907_44	PF04098,TIGR00607,COG4380	N/A	N/A	N/A	N/A
PHROG	UHGV-1493907_45	phrog_253	81.5	1.1e-23	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1493907_45	UniRef90_A0A8D9PDS3	144.0	1.28999e-40	Resistance protein	N/A
eggNOG-mapper	UHGV-1493907_45	748224.HMPREF9436_03356	110.0	9.55e-29	Siphovirus Gp157	N/A
Pfam	UHGV-1493907_45	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-1493907_45	PF05565	N/A	N/A	N/A	N/A
KOfam	UHGV-1493907_47	K01449	59.9	5.5e-17	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1493907_47	phrog_30550	197.0	0	N/A	unknown function
UniRef90	UHGV-1493907_47	UniRef90_A0A1Y4W1Z7	164.0	0	Hydrolase_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-1493907_47	1519439.JPJG01000077_gene920	123.0	1.9e-33	Cell Wall Hydrolase	N/A
Pfam	UHGV-1493907_47	PF07486	N/A	N/A	Cell Wall Hydrolase	Hydrolase_2
structural_annotation	UHGV-1493907_47	TIGR02869	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1493907_48	PF21291,NF041951,COG1513	N/A	N/A	N/A	N/A
PHROG	UHGV-1493907_50	phrog_9804	143.9	8.80015e-43	N/A	unknown function
UniRef90	UHGV-1493907_50	UniRef90_UPI0018976F94	150.0	5.36697e-43	replicative helicase loader/inhibitor	N/A
eggNOG-mapper	UHGV-1493907_50	1121344.JHZO01000003_gene981	141.0	4.65e-40	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-1493907_50	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-1493907_50	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-1493907_51	phrog_5708	99.6	2.3e-29	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1493907_51	UniRef90_UPI001F44E98A	137.0	4.84e-35	replisome organizer	N/A
eggNOG-mapper	UHGV-1493907_51	411459.RUMOBE_01034	95.1	1.71e-20	DnaD domain protein	N/A
COG	UHGV-1493907_51	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1493907_51	PF09681,TIGR01714	N/A	N/A	N/A	N/A
UniRef90	UHGV-1493907_55	UniRef90_UPI00137A4D0A	74.3	4.47e-16	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-1493907_55	665956.HMPREF1032_03112	59.7	0.0000000000392	sequence-specific DNA binding	N/A
Pfam	UHGV-1493907_55	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1493907_55	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1493907_55	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1493907_56	K21686	51.8	0.0000000000000079	prpR; XRE family transcriptional regulator, fatty acid utilization regulator	N/A
PHROG	UHGV-1493907_56	phrog_8	68.4	1.5e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-1493907_56	UniRef90_UPI0013795361	99.0	1.08e-25	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1493907_56	865861.AZSU01000002_gene2597	79.3	1.1e-18	Transcriptional	N/A
Pfam	UHGV-1493907_56	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1493907_56	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1493907_56	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
Pfam	UHGV-1493907_59	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
PHROG	UHGV-1493907_60	phrog_8	46.5	0.00000000000074	transcriptional regulator	transcription regulation
UniRef90	UHGV-1493907_60	UniRef90_UPI000D1A54DF	60.8	0.000000000236	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1493907_60	574376.BAMA_16250	63.2	0.00000000000979	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1493907_60	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-1493907_60	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1493907_60	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1493907	Yes	42,795	60	100	1